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# Copyright 1999-2024 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
inherit flag-o-matic toolchain-funcs
MY_HASH="4466924"
MY_PV="${PV}.${MY_HASH}"
MY_P="${PN^^}_distribution_Version_${MY_PV}"
DESCRIPTION="A multiple sequence alignment package"
HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
SRC_URI="http://www.tcoffee.org/Packages/Beta/Latest/${MY_P}.tar.gz"
S="${WORKDIR}/${MY_P}"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux"
RDEPEND="
sci-biology/clustalw
sci-chemistry/tm-align"
PATCHES=(
"${FILESDIR}"/${P}-mayhem.patch
"${FILESDIR}"/${P}-set_proper_dir_permissions.patch
"${FILESDIR}"/${P}-cxx11.patch
"${FILESDIR}"/${P}-gcc7.patch
"${FILESDIR}"/${P}-makefile.patch
)
src_configure() {
# -Werror=strict-aliasing
# https://bugs.gentoo.org/862327
# https://github.com/cbcrg/tcoffee/issues/60
#
# Do not trust with LTO either
append-flags -fno-strict-aliasing
filter-lto
tc-export CXX
append-cxxflags -Wno-write-strings -Wno-unused-result
}
src_compile() {
emake -C t_coffee_source t_coffee
}
src_install() {
dobin t_coffee_source/t_coffee
insinto /usr/share/t-coffee
doins -r example
}
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