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DEFINED_PHASES=configure install postinst prepare setup
DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 virtual/pkgconfig sci-biology/seqan:1.4 >=sys-devel/autoconf-archive-2016.09.16 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
DESCRIPTION=Python-based splice junction mapper for RNA-Seq reads using bowtie2
EAPI=6
HOMEPAGE=https://ccb.jhu.edu/software/tophat/
IUSE=debug python_targets_python2_7
KEYWORDS=~amd64 ~x86
LICENSE=Artistic
RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2
REQUIRED_USE=python_targets_python2_7
SLOT=0
SRC_URI=https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.1.tar.gz
_eclass_exported_funcs=pkg_postinst:- pkg_setup:python-single-r1 src_prepare:- src_configure:- src_install:-
_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 python-single-r1 c3e54dd0dc1e70c6252f2551a55bf053 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee
_md5_=67bcf40eef080ccf999e7cb3db1347e1
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