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* Move {sys-devel → llvm-core}/clang-runtimeMichał Górny2024-12-111-1/+1
* sci-biology/muscle: Stabilize 5.1.0 amd64, #945576Sam James2024-12-051-1/+1
* sci-biology/mothur: Stabilize 1.48.0 amd64, #945569Sam James2024-12-031-1/+1
* sci-biology/glimmerhmm: Stabilize 3.0.4 amd64, #945559Sam James2024-12-031-1/+1
* sci-biology/sim4: fix pkgcheck issuesFilip Kobierski2024-09-231-4/+2
* sci-biology/clustalx: remove empty IUSEFilip Kobierski2024-09-231-2/+1
* sci-biology/embassy-phylipnew: mark as LTO-unsafeEli Schwartz2024-09-221-2/+12
* sci-biology/embassy-mse: mark as LTO-unsafeEli Schwartz2024-09-221-2/+8
* sci-biology/embassy-esim4: mark as LTO-unsafeEli Schwartz2024-09-221-2/+12
* sci-biology/amap: drop 2.2-r5Volkmar W. Pogatzki2024-09-011-59/+0
* sci-biology/amap: build with java-pkg-simple, add apidocsVolkmar W. Pogatzki2024-08-271-0/+55
* sci-biology/fasta: add 36.3.8iEli Schwartz2024-08-222-0/+82
* sci-biology/fasta: mark as LTO-unsafeEli Schwartz2024-08-221-0/+5
* sci-biology/fasta: remove tcsh as a test dependency, drop IUSEEli Schwartz2024-08-221-5/+2
* sci-biology/bowtie: enable py3.12Pacho Ramos2024-07-301-1/+1
* sci-biology/treeviewx: drop 0.5.1-r3Pacho Ramos2024-07-0510-367/+0
* sci-biology/biopython: enable py3.12Alexey Shvetsov2024-06-051-1/+1
* sci-biology/ucsc-genome-browser: BDEPEND on cpioSam James2024-06-021-1/+4
* sci-biology/ucsc-genome-browser: EAPI 8Sam James2024-06-021-14/+12
* sci-biology/ucsc-genome-browser: fix USE=-serverSam James2024-06-021-1/+7
* sci-biology/ucsc-genome-browser: workaround modern C issuesSam James2024-06-021-1/+3
* sci-biology/pysam: drop 0.21.0David Seifert2024-05-243-97/+0
* sci-biology/pysam: add 0.22.1David Seifert2024-05-242-0/+69
* sci-biology/bcftools: add 1.20David Seifert2024-05-242-0/+43
* sci-biology/samtools: add 1.20David Seifert2024-05-242-0/+48
* sci-biology/samtools: drop 1.17David Seifert2024-05-242-48/+0
* sci-biology/bcftools: drop 1.17David Seifert2024-05-242-43/+0
* sci-biology/raxml: drop 7.2.6David Seifert2024-05-243-67/+0
* sci-biology/raxml: add 8.2.13David Seifert2024-05-244-4/+83
* sci-biology/hmmer: Add missing include into configureNHOrus2024-05-092-1/+20
* sci-biology/paml: restore ~x86Sam James2024-05-081-1/+1
* sci-biology/paml: respect CC, CPPFLAGS, LDFLAGSSam James2024-05-082-4/+64
* sci-biology/paml: add 4.10.7NHOrus2024-05-083-0/+41
* sci-biology/velvet: fixup whitespace & openmp checkSam James2024-05-081-9/+18
* sci-biology/velvet: scrub patch, add bug refSam James2024-05-081-2/+1
* sci-biology/velvet: Fix incompatible pointer types in 1.2.10NHOrus2024-05-082-2/+38
* */*: inline mirror://sourceforgeLucio Sauer2024-04-3010-21/+21
* sci-biology/maq: Fix assignment to incompatible pointer typeBrahmajit Das2024-04-272-2/+26
* sci-biology/maqview: Fix passing of incompatible pointer typeBrahmajit Das2024-04-272-2/+15
* sci-biology/HTSeq: treecleanArthur Zamarin2024-04-274-145/+0
* sci-biology/bedtools/files: add upstream PR referenceDavid Seifert2024-04-252-0/+4
* sci-biology/bedtools: add 2.31.1David Seifert2024-04-255-0/+352
* sci-biology/treeviewx: Stabilize 0.5.1.20100823_p4 amd64, #930203Sam James2024-04-181-1/+1
* sci-biology/treeviewx: add github upstream metadataPacho Ramos2024-04-181-0/+3
* sci-biology/treeviewx: Update icon cachePacho Ramos2024-04-181-2/+2
* sci-biology/newick-utils: update EAPI 7 -> 8Eli Schwartz2024-04-111-1/+1
* sci-biology/newick-utils: update HOMEPAGE, SRC_URI to archive.orgEli Schwartz2024-04-111-2/+2
* sci-biology/newick-utils: mark as LTO-unsafeEli Schwartz2024-04-111-2/+7
* sci-biology/kallisto: update EAPI 7 -> 8Eli Schwartz2024-04-071-1/+1
* sci-biology/kallisto: port to catch2 version 3Eli Schwartz2024-04-073-9/+13