1 files changed, 31 insertions, 0 deletions
diff --git a/sci-biology/samtools/samtools-0.1.12.ebuild b/sci-biology/samtools/samtools-0.1.12.ebuild
new file mode 100644
index 000000000000..34720e4b9abb
--- /dev/null
+++ b/sci-biology/samtools/samtools-0.1.12.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=2
+
+MY_P="${P}a"
+
+DESCRIPTION="Utilities for SAM (Sequence Alignment/Map), a format for large nucleotide sequence alignments"
+HOMEPAGE="http://samtools.sourceforge.net/"
+SRC_URI="mirror://sourceforge/${PN}/${MY_P}.tar.bz2"
+
+LICENSE="MIT"
+SLOT="0"
+IUSE=""
+KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+	sed -i 's/^CFLAGS=/CFLAGS+=/' "${S}"/{Makefile,misc/Makefile}
+}
+
+src_install() {
+	dobin samtools || die
+	dobin $(find misc -type f -executable) || die
+	insinto /usr/share/${PN}
+	doins -r examples || die
+	doman ${PN}.1 || die
+	dodoc AUTHORS ChangeLog NEWS
+}