diff options
Diffstat (limited to 'metadata/md5-cache/sci-biology')
35 files changed, 70 insertions, 70 deletions
diff --git a/metadata/md5-cache/sci-biology/abyss-2.0.3-r2 b/metadata/md5-cache/sci-biology/abyss-2.0.3-r2 index eec8c7a67e9e..950ba7c0fb15 100644 --- a/metadata/md5-cache/sci-biology/abyss-2.0.3-r2 +++ b/metadata/md5-cache/sci-biology/abyss-2.0.3-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure prepare pretend setup -DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) mpi? ( sys-cluster/openmpi ) misc-haskell? ( dev-lang/ghc ) >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) mpi? ( sys-cluster/openmpi ) misc-haskell? ( dev-lang/ghc ) >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler EAPI=6 HOMEPAGE=http://www.bcgsc.ca/platform/bioinfo/software/abyss/ @@ -9,5 +9,5 @@ LICENSE=abyss RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) mpi? ( sys-cluster/openmpi ) SLOT=0 SRC_URI=https://github.com/bcgsc/abyss/archive/2.0.3.tar.gz -> abyss-2.0.3.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e _md5_=14d874a3152b5d75a6be53f68e24fd47 diff --git a/metadata/md5-cache/sci-biology/bfast-0.7.0a b/metadata/md5-cache/sci-biology/bfast-0.7.0a index a6d2994580a9..ecbd90831b5c 100644 --- a/metadata/md5-cache/sci-biology/bfast-0.7.0a +++ b/metadata/md5-cache/sci-biology/bfast-0.7.0a @@ -1,5 +1,5 @@ DEFINED_PHASES=compile configure install prepare test -DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Blat-like Fast Accurate Search Tool EAPI=5 HOMEPAGE=https://sourceforge.net/projects/bfast/ @@ -10,5 +10,5 @@ RDEPEND=dev-perl/XML-Simple RESTRICT=!test? ( test ) SLOT=0 SRC_URI=mirror://sourceforge/bfast/bfast-0.7.0a.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb autotools-utils 961893b8004e6cf64fbef1cea6ed8bd2 desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c autotools-utils 961893b8004e6cf64fbef1cea6ed8bd2 desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 _md5_=f752137cf374be5cbb2754f3aa98ad0d diff --git a/metadata/md5-cache/sci-biology/biogrep-1.0-r2 b/metadata/md5-cache/sci-biology/biogrep-1.0-r2 index f8d6f36c8434..025168a7428c 100644 --- a/metadata/md5-cache/sci-biology/biogrep-1.0-r2 +++ b/metadata/md5-cache/sci-biology/biogrep-1.0-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=install prepare -DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Multithreaded tool for matching large sets of patterns against biosequence DBs EAPI=6 HOMEPAGE=http://stephanopoulos.openwetware.org/BIOGREP.html @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://www.openwetware.org/images/3/3d/Biogrep-1.0.tar.gz -> biogrep-1.0.tar.gz doc? ( http://www.openwetware.org/images/4/49/Biogrep.pdf -> biogrep-1.0.pdf ) -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e _md5_=9731727dae2a2514bcaa486b0059272e diff --git a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 index 0e8b6ae009ae..6da5fdcaefbf 100644 --- a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 +++ b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=dev-libs/argtable >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=dev-libs/argtable >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Scalable multiple alignment of protein sequences EAPI=6 HOMEPAGE=http://www.clustal.org/omega/ @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=dev-libs/argtable SLOT=0 SRC_URI=http://www.clustal.org/omega/clustal-omega-1.2.4.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e _md5_=9ade45d2e283bc5fcc7eef16725e18ae diff --git a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 index bf9999d7641a..041d992d4707 100644 --- a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Applications from the CBS group EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.660.tar.gz -> embassy-cbstools-1.0.0.660.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 _md5_=4166ba28131fdf70907b31300aa4c08b diff --git a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 index 6f689051b8a0..7a7a2c69e07c 100644 --- a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Clustal Omega - Multiple Sequence Alignment EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sci-biology/clustal-omega dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CLUSTALOMEGA-1.1.0.660.tar.gz -> embassy-clustalomega-1.1.0.660.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 _md5_=ef491b452e56be12961f62b16961f4f1 diff --git a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 index e815e16e2bba..da51a28636db 100644 --- a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Protein domain analysis add-on package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.660.tar.gz -> embassy-domainatrix-0.1.660.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 _md5_=bfee4f5b2b2adadb41de2eb02d4dcbc0 diff --git a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 index 74822c129144..4f5906258366 100644 --- a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Protein domain alignment add-on package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.660.tar.gz -> embassy-domalign-0.1.660.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 _md5_=9f8b2caa273f4ae3b0463e6de6782660 diff --git a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 index f990caacdcc9..ff08e15d9788 100644 --- a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Protein domain search add-on package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.660.tar.gz -> embassy-domsearch-0.1.660.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 _md5_=920906439fbc5278460201b23a615736 diff --git a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 index 26e8b964a748..2b969ec91ff7 100644 --- a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 +++ b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Simple menu of EMBOSS applications EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=ncurses? ( sys-libs/ncurses:0= ) dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMNU-1.05.660.tar.gz -> embassy-emnu-1.05.660.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 _md5_=d82c7c44ec76fa5d6165769a73e5df9a diff --git a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 index 3bc348868ce3..d1925caf438c 100644 --- a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/ESIM4-1.0.0.660.tar.gz -> embassy-esim4-1.0.0.660.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 _md5_=1b156bed7ea031aeb5464836dd987f18 diff --git a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 index 7de162a29d40..64acbe62e2b4 100644 --- a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 +++ b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of HMMER wrapper - sequence analysis with profile HMMs EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sci-biology/hmmer:2 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/HMMER-2.3.2.660.tar.gz -> embassy-hmmer-2.3.2.660.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 _md5_=83d02ae22d4e1864669639d9289cd112 diff --git a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 index f5ae743ee913..a2a2063c3e5f 100644 --- a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of InterProScan motif detection add-on package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.660.tar.gz -> embassy-iprscan-4.3.1.660.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 _md5_=73b0c29964ea3506d18ef6b6c8df70e1 diff --git a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 index d1b174a5886d..91425f479fc4 100644 --- a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of MSE - Multiple Sequence Screen Editor EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=ncurses? ( sys-libs/ncurses:0= ) dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.660.tar.gz -> embassy-mse-3.0.0.660.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 _md5_=84df94b7c4b0f044de45cef524cbf453 diff --git a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 index 966b3885c27f..968d810ef10d 100644 --- a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 +++ b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of The Phylogeny Inference Package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 free-noncomm RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.660.tar.gz -> embassy-phylipnew-3.69.660.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 _md5_=5f78f83387f741c46031c218b1965467 diff --git a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 index 9a57aa9bcf9f..dea549bd1712 100644 --- a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Protein signature add-on package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/SIGNATURE-0.1.660.tar.gz -> embassy-signature-0.1.660.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 _md5_=4cb685046b5a39b624eb3467b815c2c4 diff --git a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 index e558b547404b..df4edb07a28c 100644 --- a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Protein structure add-on package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.660.tar.gz -> embassy-structure-0.1.660.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 _md5_=634d624be78f958ed7fca02e7dc43bd4 diff --git a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 index b47addead3f9..25cfdeccc0e3 100644 --- a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Transmembrane protein display EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.660.tar.gz -> embassy-topo-2.0.660.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 _md5_=e50220ee11093554b589c1f9f53e7c09 diff --git a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 index dc06f6c047cc..609a619b74be 100644 --- a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 +++ b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Vienna RNA package - RNA folding EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.660.tar.gz -> embassy-vienna-1.7.2.660.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 _md5_=d257de40bcdb33c0735daac8a5f15fda diff --git a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 index b66cc66ccc22..ea645c34677b 100644 --- a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 +++ b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install postinst prepare -DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) +DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) DESCRIPTION=The European Molecular Biology Open Software Suite - A sequence analysis package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -10,5 +10,5 @@ PDEPEND=!minimal? ( sci-biology/aaindex sci-biology/cutg sci-biology/primer3 sci RDEPEND=!games-action/xbomber !sys-devel/cons dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 readme.gentoo-r1 22ae82e140bdd95d17a34fd5fd733190 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 8895be811ae4511c202bcf2ddb7dbfd8 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 readme.gentoo-r1 22ae82e140bdd95d17a34fd5fd733190 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 _md5_=99a47266a2a8f2fd0a874111491146e2 diff --git a/metadata/md5-cache/sci-biology/eugene-4.1d b/metadata/md5-cache/sci-biology/eugene-4.1d index e413196acb42..37d88b917f34 100644 --- a/metadata/md5-cache/sci-biology/eugene-4.1d +++ b/metadata/md5-cache/sci-biology/eugene-4.1d @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=media-libs/gd[png] media-libs/libpng:0= >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=media-libs/gd[png] media-libs/libpng:0= >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Prokaryotic and Eukaryotic gene predictor EAPI=6 HOMEPAGE=http://eugene.toulouse.inra.fr/ @@ -9,5 +9,5 @@ RDEPEND=media-libs/gd[png] media-libs/libpng:0= RESTRICT=test SLOT=0 SRC_URI=https://mulcyber.toulouse.inra.fr/frs/download.php/1359/eugene-4.1d.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e _md5_=683d1e7f9daeda6cd20b92117330ea81 diff --git a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 index d1e07edc3dc4..aa1a1dc84970 100644 --- a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 +++ b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=dev-libs/glib:2 >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=dev-libs/glib:2 >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Generic tool for pairwise sequence comparison EAPI=6 HOMEPAGE=https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate @@ -11,5 +11,5 @@ REQUIRED_USE=test? ( utils ) RESTRICT=!test? ( test ) SLOT=0 SRC_URI=http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/exonerate-2.2.0.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e _md5_=05c99b447503c7a3fae4594cd126939a diff --git a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 index 9aef76f036ed..9dcc2cbfaa65 100644 --- a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 +++ b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=sci-biology/libgtextutils virtual/pkgconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=sci-biology/libgtextutils virtual/pkgconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Tools for Short Read FASTA/FASTQ file processing EAPI=6 HOMEPAGE=http://hannonlab.cshl.edu/fastx_toolkit @@ -8,5 +8,5 @@ LICENSE=AGPL-3 RDEPEND=dev-perl/PerlIO-gzip dev-perl/GDGraph sci-biology/libgtextutils:= sci-visualization/gnuplot SLOT=0 SRC_URI=https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2 -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e _md5_=c3bb0edd6b01a31019cf5fd59e22122a diff --git a/metadata/md5-cache/sci-biology/gibbs-3.1 b/metadata/md5-cache/sci-biology/gibbs-3.1 index b6cc6b495804..0dc34897fdec 100644 --- a/metadata/md5-cache/sci-biology/gibbs-3.1 +++ b/metadata/md5-cache/sci-biology/gibbs-3.1 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure install postinst prepare DEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 ) DESCRIPTION=Identify motifs, conserved regions, in DNA or protein sequences @@ -10,5 +10,5 @@ LICENSE=GPL-2 RDEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 ) SLOT=0 SRC_URI=mirror://gentoo/gibbs-3.1.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e _md5_=8d48efee68d1063803fccbc4c73a0f5d diff --git a/metadata/md5-cache/sci-biology/iedera-1.05-r1 b/metadata/md5-cache/sci-biology/iedera-1.05-r1 index 08e295b3a2a1..1d31350a5b53 100644 --- a/metadata/md5-cache/sci-biology/iedera-1.05-r1 +++ b/metadata/md5-cache/sci-biology/iedera-1.05-r1 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A subset seed design tool for DNA sequence alignment EAPI=6 HOMEPAGE=http://bioinfo.lifl.fr/yass/iedera.php @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://bioinfo.lifl.fr/yass/files/iedera-1.05.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e _md5_=ce77e1e27bd52fed2fd2af52744d6288 diff --git a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1 b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1 index de3d772a0308..e6bd826e0bb2 100644 --- a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1 +++ b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Gordon Text utils Library EAPI=6 HOMEPAGE=http://hannonlab.cshl.edu/fastx_toolkit/ @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=AGPL-3 SLOT=0/0 SRC_URI=http://hannonlab.cshl.edu/fastx_toolkit/libgtextutils-0.6.1.tar.bz2 -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e _md5_=867c9b9e4eee26ad2a76ff6ff0594f52 diff --git a/metadata/md5-cache/sci-biology/maq-0.7.1-r2 b/metadata/md5-cache/sci-biology/maq-0.7.1-r2 index b23d47ad32e2..8fd2eb1579cd 100644 --- a/metadata/md5-cache/sci-biology/maq-0.7.1-r2 +++ b/metadata/md5-cache/sci-biology/maq-0.7.1-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=install prepare -DEPEND=sys-libs/zlib >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=sys-libs/zlib >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Mapping and Assembly with Qualities, mapping NGS reads to reference genomes EAPI=6 HOMEPAGE=http://maq.sourceforge.net/ @@ -8,5 +8,5 @@ LICENSE=GPL-3 RDEPEND=sys-libs/zlib SLOT=0 SRC_URI=mirror://sourceforge/maq/maq-0.7.1.tar.bz2 mirror://sourceforge/maq/calib-36.dat.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e _md5_=39ffb0025210075a8d7d7f6f81f8da56 diff --git a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 index b69fbef05ac1..5a8aa90c7d92 100644 --- a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 +++ b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=media-libs/freeglut sys-libs/zlib >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=media-libs/freeglut sys-libs/zlib >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=GUI for sci-biology/maq, a short read mapping assembler EAPI=6 HOMEPAGE=http://maq.sourceforge.net/ @@ -8,5 +8,5 @@ LICENSE=GPL-3 RDEPEND=media-libs/freeglut sys-libs/zlib sci-biology/maq SLOT=0 SRC_URI=mirror://sourceforge/maq/maqview-0.2.5.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e _md5_=dee50558d10e75ff9e96f4c3f177c55f diff --git a/metadata/md5-cache/sci-biology/mcl-14.137 b/metadata/md5-cache/sci-biology/mcl-14.137 index f1600b200c53..62153df13ebe 100644 --- a/metadata/md5-cache/sci-biology/mcl-14.137 +++ b/metadata/md5-cache/sci-biology/mcl-14.137 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure prepare DESCRIPTION=A Markov Cluster Algorithm implementation EAPI=7 @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://micans.org/mcl/src/mcl-14-137.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e _md5_=9779366f51f2fea08274072a9a019159 diff --git a/metadata/md5-cache/sci-biology/mira-4.0.2 b/metadata/md5-cache/sci-biology/mira-4.0.2 index 8416d502392f..aea9b5532cad 100644 --- a/metadata/md5-cache/sci-biology/mira-4.0.2 +++ b/metadata/md5-cache/sci-biology/mira-4.0.2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install postinst prepare -DEPEND=dev-libs/boost[threads] dev-util/google-perftools sys-devel/flex app-editors/vim-core dev-libs/expat >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=dev-libs/boost[threads] dev-util/google-perftools sys-devel/flex app-editors/vim-core dev-libs/expat >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Illumina EAPI=6 HOMEPAGE=http://www.chevreux.org/projects_mira.html @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=dev-libs/boost[threads] dev-util/google-perftools SLOT=0 SRC_URI=https://sourceforge.net/projects/mira-assembler/files/MIRA/stable/mira-4.0.2.tar.bz2 mirror://sourceforge/mira-assembler/mira_3rdparty_06-07-2012.tar.bz2 -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 _md5_=fda11f1c5cd244c9f03806334b1eda1c diff --git a/metadata/md5-cache/sci-biology/newick-utils-1.6-r1 b/metadata/md5-cache/sci-biology/newick-utils-1.6-r1 index ca4b6c7c8ffa..dac6b1db1972 100644 --- a/metadata/md5-cache/sci-biology/newick-utils-1.6-r1 +++ b/metadata/md5-cache/sci-biology/newick-utils-1.6-r1 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure install prepare DEPEND=xml? ( dev-libs/libxml2 ) DESCRIPTION=Tools for processing phylogenetic trees @@ -10,5 +10,5 @@ LICENSE=BSD RDEPEND=xml? ( dev-libs/libxml2 ) !dev-games/libnw SLOT=0 SRC_URI=http://cegg.unige.ch/pub/newick-utils-1.6.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e _md5_=fac40fe86b457a75883a5eb465ce18d8 diff --git a/metadata/md5-cache/sci-biology/samtools-1.10 b/metadata/md5-cache/sci-biology/samtools-1.10 index 83f966082f43..76fc6b8f009c 100644 --- a/metadata/md5-cache/sci-biology/samtools-1.10 +++ b/metadata/md5-cache/sci-biology/samtools-1.10 @@ -1,4 +1,4 @@ -BDEPEND=virtual/pkgconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +BDEPEND=virtual/pkgconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=compile configure install prepare test DEPEND=dev-lang/perl =sci-libs/htslib-1.10* sys-libs/ncurses:0=[unicode] sys-libs/zlib:= DESCRIPTION=Utilities for analysing and manipulating the SAM/BAM alignment formats @@ -9,5 +9,5 @@ LICENSE=MIT RDEPEND=dev-lang/perl =sci-libs/htslib-1.10* sys-libs/ncurses:0=[unicode] sys-libs/zlib:= SLOT=0 SRC_URI=mirror://sourceforge/samtools/samtools-1.10.tar.bz2 -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e _md5_=67d56fa48d3a475403ad1a726690e370 diff --git a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 index 596833469443..66d49b2cb008 100644 --- a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 +++ b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=x11-libs/wxGTK:3.0[X] >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=x11-libs/wxGTK:3.0[X] >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A phylogenetic tree viewer EAPI=5 HOMEPAGE=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/ @@ -8,5 +8,5 @@ LICENSE=GPL-2 RDEPEND=x11-libs/wxGTK:3.0[X] SLOT=0 SRC_URI=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/0.5/tv-0.5.1.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 wxwidgets e1e6e1eb5b3d911b3abd712f611e2312 +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 wxwidgets e1e6e1eb5b3d911b3abd712f611e2312 _md5_=ce129f3e61a849cfd3654e5a9fa4b17a diff --git a/metadata/md5-cache/sci-biology/vcftools-0.1.14 b/metadata/md5-cache/sci-biology/vcftools-0.1.14 index 4ae590c3204f..38b90aebae87 100644 --- a/metadata/md5-cache/sci-biology/vcftools-0.1.14 +++ b/metadata/md5-cache/sci-biology/vcftools-0.1.14 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure prepare -DEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) virtual/pkgconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) virtual/pkgconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Tools for working with VCF (Variant Call Format) files EAPI=6 HOMEPAGE=http://vcftools.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-3 RDEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) SLOT=0 SRC_URI=https://github.com/vcftools/vcftools/releases/download/v0.1.14/vcftools-0.1.14.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch e8f1ec13660dc2f44b32775765d85e42 estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib d410501a125f99ffb560b0c523cd3d1e perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 _md5_=82adffd84f2a93745e683b498b79fbe8 diff --git a/metadata/md5-cache/sci-biology/yass-1.14-r2 b/metadata/md5-cache/sci-biology/yass-1.14-r2 index 46c0e186421b..69df10751199 100644 --- a/metadata/md5-cache/sci-biology/yass-1.14-r2 +++ b/metadata/md5-cache/sci-biology/yass-1.14-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure prepare -DEPEND=dmalloc? ( dev-libs/dmalloc ) >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=dmalloc? ( dev-libs/dmalloc ) >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Genomic similarity search with multiple transition constrained spaced seeds EAPI=6 HOMEPAGE=http://bioinfo.lifl.fr/yass/ @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=dmalloc? ( dev-libs/dmalloc ) SLOT=0 SRC_URI=http://bioinfo.lifl.fr/yass/files/yass-1.14.tar.gz -_eclasses_=autotools 3ec5e49b810b2571ca9c6d76f55867bb libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e +_eclasses_=autotools 9677fc170e6d375dc41c14871b33d28c libtool f143db5a74ccd9ca28c1234deffede96 multilib d410501a125f99ffb560b0c523cd3d1e toolchain-funcs 1a94dc06d324bd0dab754e11abe6d27e _md5_=3a4ba9b4e7b8efec51cfc79d261fefd3 |