diff options
Diffstat (limited to 'dev-lang/R/R-4.0.5-r1.ebuild')
| -rw-r--r-- | dev-lang/R/R-4.0.5-r1.ebuild | 243 |
1 files changed, 0 insertions, 243 deletions
diff --git a/dev-lang/R/R-4.0.5-r1.ebuild b/dev-lang/R/R-4.0.5-r1.ebuild deleted file mode 100644 index ea1e78006a93..000000000000 --- a/dev-lang/R/R-4.0.5-r1.ebuild +++ /dev/null @@ -1,243 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs - -# latest git commit for R bash completion: https://github.com/deepayan/rcompletion -BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6 - -DESCRIPTION="Language and environment for statistical computing and graphics" -HOMEPAGE="http://www.r-project.org/" -SRC_URI=" - mirror://cran/src/base/R-4/${P}.tar.gz - https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion" - -LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" -SLOT="0" -KEYWORDS="amd64 arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux" -IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk X" - -# One test required profiling in v4.0.2, check the upstream bug: -# -# https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17836 -# -REQUIRED_USE="png? ( || ( cairo X ) ) - jpeg? ( || ( cairo X ) ) - tiff? ( || ( cairo X ) ) - test? ( profile ) -" - -# At least one package installation in the test suite requires TeX, -# and will fail without it (bug #718056). -BDEPEND="virtual/pkgconfig - doc? ( - virtual/latex-base - dev-texlive/texlive-fontsrecommended - ) - test? ( virtual/latex-base )" -DEPEND=" - app-arch/bzip2:0= - app-arch/xz-utils:0= - app-text/ghostscript-gpl - dev-libs/libpcre2:= - net-libs/libtirpc - net-misc/curl - virtual/blas:0 - || ( sys-apps/coreutils app-misc/realpath ) - cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= ) - icu? ( dev-libs/icu:= ) - jpeg? ( virtual/jpeg:0 ) - lapack? ( virtual/lapack:0 ) - perl? ( dev-lang/perl ) - png? ( media-libs/libpng:0= ) - readline? ( sys-libs/readline:0= ) - tiff? ( media-libs/tiff:0= ) - tk? ( dev-lang/tk:0= ) - X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )" - -RDEPEND="${DEPEND} - sys-libs/zlib:0[minizip] - java? ( >=virtual/jre-1.8:* )" - -RESTRICT="minimal? ( test ) - !test? ( test )" - -PATCHES=( - "${FILESDIR}"/${PN}-3.4.1-parallel.patch - "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch - "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch - "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch -) - -pkg_pretend() { - [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp -} - -pkg_setup() { - if [[ ${MERGE_TYPE} != binary ]] && use openmp; then - FORTRAN_NEED_OPENMP=1 - fi - fortran-2_pkg_setup - filter-ldflags -Wl,-Bdirect -Bdirect - # avoid using existing R installation - unset R_HOME - # Temporary fix for bug #419761 - if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then - append-flags -fno-ipa-cp-clone - fi -} - -src_prepare() { - default - - # fix packages.html for doc (gentoo bug #205103) - sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ - -i src/library/tools/R/Rd.R || die - - # fix Rscript path when installed (gentoo bug #221061) - sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT}/usr/$(get_libdir)/${PN}\"':" \ - -i src/unix/Makefile.in || die "sed unix Makefile failed" - - # fix HTML links to manual (gentoo bug #273957) - sed -e 's:\.\./manual/:manual/:g' \ - -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" - - use lapack && \ - export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" - - if use X; then - export R_BROWSER="$(type -p xdg-open)" - export R_PDFVIEWER="$(type -p xdg-open)" - fi - use perl && \ - export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" - - # don't search /usr/local - sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die - # Fix for Darwin (OS X) - if use prefix; then - if [[ ${CHOST} == *-darwin* ]] ; then - sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ - -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ - -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ - -e "/SHLIB_EXT/s/\.so/.dylib/" \ - -i configure.ac || die - # sort of "undo" 2.14.1-rmath-shared.patch - sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT}/usr/$(get_libdir)/libRmath.dylib:" \ - -i src/nmath/standalone/Makefile.in || die - else - append-ldflags -Wl,-rpath="${EROOT}/usr/$(get_libdir)/R/lib" - fi - fi - AT_M4DIR=m4 - eautoreconf -} - -src_configure() { - # --with-system-tre \ - # tre is patched from upstream - econf \ - --enable-byte-compiled-packages \ - --enable-R-shlib \ - --disable-R-framework \ - --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ - rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ - $(use_enable java) \ - $(use_enable nls) \ - $(use_enable openmp) \ - $(use_enable profile R-profiling) \ - $(use_enable profile memory-profiling) \ - $(use_enable static-libs static) \ - $(use_enable static-libs R-static-lib) \ - $(use_with cairo) \ - $(use_with icu ICU) \ - $(use_with jpeg jpeglib) \ - $(use_with lapack) \ - $(use_with !minimal recommended-packages) \ - $(use_with png libpng) \ - $(use_with readline) \ - $(use_with tiff libtiff) \ - $(use_with tk tcltk) \ - $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \ - $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \ - $(use_with X x) -} - -src_compile() { - export VARTEXFONTS="${T}/fonts" - emake AR="$(tc-getAR)" - emake -C src/nmath/standalone \ - shared $(use static-libs && echo static) AR="$(tc-getAR)" - use doc && emake info pdf -} - -src_install() { - default - emake -j1 -C src/nmath/standalone DESTDIR="${D}" install - - if use doc; then - emake DESTDIR="${D}" install-info install-pdf - dosym ../manual /usr/share/doc/${PF}/html/manual - fi - - cat > 99R <<-EOF - LDPATH=${EROOT}/usr/$(get_libdir)/${PN}/lib - R_HOME=${EROOT}/usr/$(get_libdir)/${PN} - EOF - doenvd 99R - newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN} - # The buildsystem has a different understanding of install_names than - # we require. Since it builds modules like shared objects (wrong), many - # objects (all modules) get an incorrect install_name. Fixing the build - # system here is not really trivial. - if [[ ${CHOST} == *-darwin* ]] ; then - local mod - pushd "${ED}"/usr/$(get_libdir)/R > /dev/null - for mod in $(find . -name "*.dylib") ; do - mod=${mod#./} - install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \ - "${mod}" - done - popd > /dev/null - fi - - # Users are encouraged to access some of the the R documentation - # interactively, through functions like "contributors()" that - # tries to open the "AUTHORS" file. Other files can be accessed - # by name with RShowDoc(), and the documentation for e.g. license() - # and RShowDoc() suggests a few of these names. Here we try to - # collect as many names as possible that a user might actually - # try to view through R, because if we don't decompress them, - # then R doesn't know what to do with 'em. Bug #556706. - INTERACTIVE_DOCS=( - AUTHORS - COPYING - FAQ - NEWS - THANKS - ) - - # Other data sources that are shipped as "documentation," but which - # need to be accessible via their original unmolested filenames. - INTERACTIVE_DATA=( - BioC_mirrors.csv - CRAN_mirrors.csv - KEYWORDS.db - NEWS.rds - ) - - NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" ) - - for f in "${NOCOMPRESS_DOCS[@]}"; do - docompress -x "/usr/share/doc/${PF}/${f}" - done -} - -pkg_postinst() { - if use java; then - einfo "Re-initializing java paths for ${P}" - R CMD javareconf - fi -} |