sci-libs/vtk: add 9.0.3-r5 w/ fixed gdal dep

Idea is to stable this w/ new GDAL.

See: 7fa499da25bf08098ba57a7421129c9288443de4
Signed-off-by: Sam James <sam@gentoo.org>

1 files changed, 551 insertions, 0 deletions

diff --git a/sci-libs/vtk/vtk-9.0.3-r5.ebuild b/sci-libs/vtk/vtk-9.0.3-r5.ebuild
new file mode 100644
index 000000000000..0670773dab1b
--- /dev/null
+++ b/sci-libs/vtk/vtk-9.0.3-r5.ebuild
@@ -0,0 +1,551 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+# TODO:
+# - add USE flag for remote modules? Those modules can be downloaded
+#	properly before building.
+
+PYTHON_COMPAT=( python3_{8..10} )
+WEBAPP_OPTIONAL=yes
+WEBAPP_MANUAL_SLOT=yes
+
+inherit check-reqs cmake cuda flag-o-matic java-pkg-opt-2 python-single-r1 toolchain-funcs virtualx webapp
+
+# Short package version
+MY_PV="$(ver_cut 1-2)"
+
+DESCRIPTION="The Visualization Toolkit"
+HOMEPAGE="https://www.vtk.org/"
+SRC_URI="
+	https://www.vtk.org/files/release/${MY_PV}/VTK-${PV}.tar.gz
+	https://www.vtk.org/files/release/${MY_PV}/VTKData-${PV}.tar.gz
+	doc? ( https://www.vtk.org/files/release/${MY_PV}/vtkDocHtml-${PV}.tar.gz )
+	examples? ( https://www.vtk.org/files/release/${MY_PV}/VTKLargeData-${PV}.tar.gz )
+	test? (
+		https://www.vtk.org/files/release/${MY_PV}/VTKLargeData-${PV}.tar.gz
+	)
+"
+S="${WORKDIR}/VTK-${PV}"
+
+LICENSE="BSD LGPL-2"
+SLOT="0/${MY_PV}"
+KEYWORDS="~amd64 ~arm ~arm64 ~x86 ~amd64-linux ~x86-linux"
+# Note: external xdmf2 has no recognized target
+IUSE="+X all-modules boost cuda doc examples ffmpeg gdal imaging java
+	+json kits mpi mysql odbc offscreen openmp pegtl postgres python
+	qt5 +rendering tbb theora tk video_cards_nvidia views web"
+
+RESTRICT="!test? ( test )"
+
+REQUIRED_USE="
+	all-modules? ( boost ffmpeg gdal imaging mysql odbc postgres qt5 rendering theora views )
+	cuda? ( X video_cards_nvidia )
+	java? ( rendering )
+	python? ( ${PYTHON_REQUIRED_USE} )
+	qt5? ( X rendering )
+	tk? ( X rendering python )
+	web? ( python )
+	^^ ( X offscreen )
+"
+
+RDEPEND="
+	app-arch/lz4
+	app-arch/xz-utils
+	dev-db/sqlite
+	dev-cpp/eigen[cuda?,openmp?]
+	dev-libs/double-conversion:=
+	dev-libs/expat
+	dev-libs/icu:=
+	dev-libs/libxml2:2
+	dev-libs/pugixml
+	media-libs/freetype
+	media-libs/libogg
+	media-libs/libpng
+	media-libs/libtheora
+	media-libs/tiff
+	<sci-libs/hdf5-1.12:=[mpi=]
+	sci-libs/kissfft[openmp?]
+	sci-libs/netcdf:=[mpi=]
+	sys-libs/zlib
+	media-libs/libjpeg-turbo
+	all-modules? ( sci-geosciences/liblas[gdal] )
+	boost? ( dev-libs/boost:=[mpi?] )
+	cuda? ( dev-util/nvidia-cuda-toolkit:= )
+	ffmpeg? ( media-video/ffmpeg:= )
+	gdal? ( sci-libs/gdal:= )
+	java? ( >=virtual/jdk-1.8:* )
+	json? ( dev-libs/jsoncpp:= )
+	mpi? (
+		sci-libs/h5part
+		sys-cluster/openmpi[cxx,romio]
+	)
+	mysql? ( dev-db/mariadb-connector-c )
+	odbc? ( dev-db/unixODBC )
+	offscreen? ( media-libs/mesa[osmesa] )
+	postgres? ( dev-db/postgresql:= )
+	python? ( ${PYTHON_DEPS} )
+	qt5? (
+		dev-qt/qtcore:5
+		dev-qt/qtsql:5
+		dev-qt/qtwidgets:5
+	)
+	rendering? (
+		media-libs/freeglut
+		media-libs/glew:=
+		<sci-libs/proj-8:=
+		virtual/opengl
+		x11-libs/gl2ps
+	)
+	tbb? ( <dev-cpp/tbb-2021:= )
+	tk? ( dev-lang/tk:= )
+	video_cards_nvidia? ( x11-drivers/nvidia-drivers[tools,static-libs] )
+	views? (
+		x11-libs/libICE
+		x11-libs/libXext
+	)
+	web? ( ${WEBAPP_DEPEND} )
+	python? (
+		$(python_gen_cond_dep '
+			boost? ( dev-libs/boost:=[mpi?,python?,${PYTHON_USEDEP}] )
+			mpi? ( dev-python/mpi4py[${PYTHON_USEDEP}] )
+		')
+		gdal? ( sci-libs/gdal:=[python?,${PYTHON_SINGLE_USEDEP}] )
+	)
+"
+DEPEND="
+	${RDEPEND}
+	dev-libs/jsoncpp
+	dev-libs/utfcpp
+	pegtl? ( <dev-libs/pegtl-3 )
+"
+BDEPEND="
+	mpi? ( app-admin/chrpath )
+	openmp? (
+		|| (
+			sys-devel/gcc[openmp(+)]
+			sys-devel/clang-runtime[openmp(+)]
+		)
+	)
+"
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-9.0.1-0001-fix-kepler-compute_arch-if-CUDA-toolkit-11-is-used.patch
+	"${FILESDIR}"/${PN}-8.2.0-freetype-2.10.3-provide-FT_CALLBACK_DEF.patch
+	"${FILESDIR}"/${PN}-9.0.1-limits-include-gcc11.patch
+	"${FILESDIR}"/${P}-IO-FFMPEG-support-FFmpeg-5.0-API-changes.patch
+)
+
+DOCS=( CONTRIBUTING.md README.md )
+
+CHECKREQS_DISK_BUILD="3G"
+
+pkg_pretend() {
+	if use examples; then
+		CHECKREQS_DISK_BUILD="4G"
+	fi
+	if use cuda; then
+		# NOTE: This should actually equal to (number of build jobs)*7G,
+		# as any of the cuda compile tasks can take up 7G!
+		# 10.2 GiB install directory, 6.4 GiB build directory with max. USE flags
+		CHECKREQS_MEMORY="7G"
+		CHECKREQS_DISK_BUILD="14G"
+	fi
+	check-reqs_pkg_setup
+}
+
+pkg_setup() {
+	if use examples; then
+		CHECKREQS_DISK_BUILD="4G"
+	fi
+	if use cuda; then
+		CHECKREQS_MEMORY="7G"
+		CHECKREQS_DISK_BUILD="14G"
+	fi
+	check-reqs_pkg_setup
+
+	use java && java-pkg-opt-2_pkg_setup
+	use python && python-single-r1_pkg_setup
+	use web && webapp_pkg_setup
+}
+
+src_prepare() {
+	# If we have system libraries available use these and delete
+	# the respecting files in ${S}/ThirdParty to save some space.
+	# Note: libharu is omitted: vtk needs an updated version (2.4.0)
+	# Note: no valid xdmf2 targets are found for system xdmf2
+	# Note: no valid target found for h5part and mpi4py
+	# TODO: diy2 exodusII h5part libharu verdict vpic vtkm xdmf2 xdmf3 zfp
+	local -a DROPS=( doubleconversion eigen expat freetype gl2ps glew
+		hdf5 jpeg jsoncpp libproj libxml2 lz4 lzma netcdf ogg png pugixml
+		sqlite theora tiff utf8 zlib )
+	use pegtl && DROPS+=( pegtl )
+
+	local x
+	for x in ${DROPS[@]}; do
+		ebegin "Dropping bundled ${x}"
+		rm -r ThirdParty/${x}/vtk${x} || die
+		eend $?
+	done
+	unset x
+
+	if use doc; then
+		einfo "Removing .md5 files from documents."
+		rm -f "${WORKDIR}"/html/*.md5 || die "Failed to remove superfluous hashes"
+		sed -e "s|\${VTK_BINARY_DIR}/Utilities/Doxygen/doc|${WORKDIR}|" \
+			-i Utilities/Doxygen/CMakeLists.txt || die
+	fi
+
+	cmake_src_prepare
+
+	if use cuda; then
+		cuda_add_sandbox -w
+		cuda_src_prepare
+	fi
+
+	if use test; then
+		ebegin "Copying data files to ${BUILD_DIR}"
+		mkdir -p "${BUILD_DIR}/ExternalData" || die
+		pushd "${BUILD_DIR}/ExternalData" >/dev/null || die
+		ln -sf ../../VTK-${PV}/.ExternalData/README.rst . || die
+		ln -sf ../../VTK-${PV}/.ExternalData/SHA512 . || die
+		popd >/dev/null || die
+		eend "$?"
+	fi
+}
+
+src_configure() {
+	local mycmakeargs=(
+# TODO: defaults for some variables to consider as USE flags
+#		-DVTK_ANDROID_BUILD=OFF
+#		-DVTK_BUILD_COMPILE_TOOLS_ONLY=OFF
+#		-DVTK_ENABLE_LOGGING=ON
+#		-DVTK_ENABLE_REMOTE_MODULES=ON
+#		-DVTK_INSTALL_SDK=ON
+#		-DVTK_IOS_BUILD=OFF
+#		-DVTK_LEGACY_REMOVE=OFF
+#		-DVTK_LEGACY_SILENT=OFF
+#		-DVTK_WHEEL_BUILD=OFF
+
+		-DVTK_BUILD_ALL_MODULES=$(usex all-modules ON OFF)
+		# we use the pre-built documentation and install these with USE=doc
+		-DVTK_BUILD_DOCUMENTATION=OFF
+		-DVTK_BUILD_EXAMPLES=$(usex examples ON OFF)
+
+		-DVTK_ENABLE_KITS=$(usex kits ON OFF)
+		# default to ON: USE flag for this?
+		-DVTK_ENABLE_REMOTE_MODULES=OFF
+
+		-DVTK_DATA_STORE="${S}/.ExternalData"
+
+		# Use upstream default, where USE flags are not given.
+		# Passing "DONT_WANT" will restrict building of modules from
+		# those groups and will severly limit the built libraries.
+		# Exceptions are MPI, where the default is "DONT_WANT" and
+		# StandAlone using "WANT".
+		-DVTK_GROUP_ENABLE_Imaging=$(usex imaging "WANT" "DEFAULT")
+		-DVTK_GROUP_ENABLE_Qt=$(usex qt5 "WANT" "DEFAULT")
+		-DVTK_GROUP_ENABLE_Rendering=$(usex rendering "WANT" "DEFAULT")
+		-DVTK_GROUP_ENABLE_StandAlone="WANT"
+		-DVTK_GROUP_ENABLE_Views=$(usex views "WANT" "DEFAULT")
+		-DVTK_GROUP_ENABLE_Web=$(usex web "WANT" "DEFAULT")
+
+		-DVTK_MODULE_ENABLE_VTK_vtkm="WANT"
+		-DVTK_MODULE_ENABLE_VTK_AcceleratorsVTKm="WANT"
+
+		-DVTK_PYTHON_VERSION="3"
+		-DVTK_RELOCATABLE_INSTALL=ON
+
+		-DVTK_USE_CUDA=$(usex cuda ON OFF)
+		# use system libraries where possible
+		-DVTK_USE_EXTERNAL=ON
+		-DVTK_USE_MPI=$(usex mpi ON OFF)
+		-DVTK_USE_TK=$(usex tk ON OFF)
+		-DVTK_USE_X=$(usex X ON OFF)
+
+		-DVTK_VERSIONED_INSTALL=ON
+
+		-DVTK_WRAP_JAVA=$(usex java ON OFF)
+		-DVTK_WRAP_PYTHON=$(usex python ON OFF)
+	)
+
+	if use examples || use test; then
+		mycmakeargs+=( -DVTK_USE_LARGE_DATA=ON )
+	fi
+
+	if ! use java && ! use python; then
+		# defaults to ON
+		mycmakeargs+=( -DVTK_ENABLE_WRAPPING=OFF )
+	fi
+
+	if use boost; then
+		mycmakeargs+=(
+			-DVTK_MODULE_ENABLE_VTK_InfovisBoost="WANT"
+			-DVTK_MODULE_ENABLE_VTK_InfovisBoostGraphAlgorithms="WANT"
+		)
+	fi
+
+	if use cuda; then
+		local cuda_arch=
+		case ${VTK_CUDA_ARCH:-native} in
+			# we ignore fermi arch, because current nvidia-cuda-toolkit-11*
+			# no longer supports it
+			kepler|maxwell|pascal|volta|turing|ampere|all)
+				cuda_arch=${VTK_CUDA_ARCH}
+				;;
+			native)
+				ewarn "If auto detection fails for you, please try and export the"
+				ewarn "VTK_CUDA_ARCH environment variable to one of the common arch"
+				ewarn "names: kepler, maxwell, pascal, volta, turing, ampere or all."
+				cuda_arch=native
+				;;
+			*)
+				eerror "Please properly set the VTK_CUDA_ARCH environment variable to"
+				eerror "one of: kepler, maxwell, pascal, volta, turing, ampere, all"
+				die "Invalid CUDA architecture given: '${VTK_CUDA_ARCH}'!"
+				;;
+		esac
+		ewarn "Using CUDA architecture '${cuda_arch}'"
+
+		mycmakeargs+=( -DVTKm_CUDA_Architecture=${cuda_arch} )
+	fi
+
+	if use ffmpeg; then
+		mycmakeargs+=( -DVTK_MODULE_ENABLE_VTK_IOFFMPEG="WANT" )
+	fi
+
+	if use gdal; then
+		mycmakeargs+=( -DVTK_MODULE_ENABLE_VTK_GeovisGDAL="WANT" )
+	fi
+
+	if use java; then
+		mycmakeargs+=(
+			-DCMAKE_INSTALL_JARDIR="share/${PN}"
+			-DVTK_ENABLE_WRAPPING=ON
+		)
+	fi
+
+	if use json; then
+		mycmakeargs+=( -DVTK_MODULE_ENABLE_VTK_IOGeoJSON="WANT" )
+	fi
+
+	if use mpi; then
+		mycmakeargs+=(
+			-DVTK_GROUP_ENABLE_MPI="WANT"
+			-DVTK_MODULE_ENABLE_VTK_IOH5part="WANT"
+			-DVTK_MODULE_ENABLE_VTK_IOParallel="WANT"
+			-DVTK_MODULE_ENABLE_VTK_IOParallelNetCDF="WANT"
+			-DVTK_MODULE_ENABLE_VTK_IOParallelXML="WANT"
+			-DVTK_MODULE_ENABLE_VTK_ParallelMPI="WANT"
+			-DVTK_MODULE_ENABLE_VTK_RenderingParallel="WANT"
+			-DVTK_MODULE_ENABLE_VTK_h5part="WANT"
+			-DVTKm_ENABLE_MPI=ON
+		)
+		if use python; then
+			mycmakeargs+=( -DVTK_MODULE_ENABLE_VTK_ParallelMPI4Py="WANT" )
+		fi
+	fi
+
+	if use mysql; then
+		mycmakeargs+=(
+			-DVTK_MODULE_ENABLE_VTK_IOMySQL="WANT"
+			-DVTK_MODULE_ENABLE_VTK_IOSQL="WANT"
+		)
+	fi
+
+	if use odbc; then
+		mycmakeargs+=( -DVTK_MODULE_ENABLE_VTK_IOODBC="WANT" )
+	fi
+
+	if use offscreen; then
+		mycmakeargs+=(
+			-DVTK_DEFAULT_RENDER_WINDOW_OFFSCREEN=ON
+			-DVTK_DEFAULT_RENDER_WINDOW_HEADLESS=ON
+			-DVTK_OPENGL_HAS_OSMESA=ON
+		)
+	fi
+
+	if use openmp; then
+		if use tbb; then
+			einfo "NOTE: You have specified both openmp and tbb USE flags."
+			einfo "NOTE: Tbb will take precedence. Disabling OpenMP"
+			# Sequential is default SMP implementation, nothing special to do
+		else
+			mycmakeargs+=(
+				-DVTK_SMP_IMPLEMENTATION_TYPE="OpenMP"
+				-DVTKm_ENABLE_OPENMP=ON
+			)
+		fi
+	fi
+
+	if use pegtl; then
+		mycmakeargs+=( -DVTK_MODULE_USE_EXTERNAL_VTK_pegtl=ON )
+	else
+		mycmakeargs+=( -DVTK_MODULE_USE_EXTERNAL_VTK_pegtl=OFF )
+	fi
+
+	if use postgres; then
+		mycmakeargs+=(
+			-DVTK_MODULE_ENABLE_VTK_IOPostgreSQL="WANT"
+			-DVTK_MODULE_ENABLE_VTK_IOSQL="WANT"
+		)
+	fi
+
+	if use python; then
+		mycmakeargs+=(
+			-DVTK_ENABLE_WRAPPING=ON
+			-DPython3_EXECUTABLE="${PYTHON}"
+			-DVTK_PYTHON_SITE_PACKAGES_SUFFIX="lib/${EPYTHON}/site-packages"
+		)
+	fi
+
+	if use qt5; then
+		mycmakeargs+=( -DVTK_MODULE_ENABLE_VTK_GUISupportQt="WANT" )
+		if use mysql || use postgres; then
+			mycmakeargs+=( -DVTK_MODULE_ENABLE_VTK_GUISupportQtSQL="WANT" )
+		fi
+		if use rendering; then
+			mycmakeargs+=( -DVTK_MODULE_ENABLE_VTK_RenderingQt="WANT" )
+		fi
+		if use views; then
+			mycmakeargs+=( -DVTK_MODULE_ENABLE_VTK_ViewsQt="WANT" )
+		fi
+	fi
+
+	if use rendering || use web || use all-modules; then
+		# needs patched version
+		mycmakeargs+=( -DVTK_MODULE_USE_EXTERNAL_VTK_libharu=OFF )
+	fi
+
+	if use rendering; then
+		mycmakeargs+=(
+			-DVTK_MODULE_ENABLE_VTK_IOExportGL2PS="WANT"
+			-DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=ON
+			-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON
+			-DVTK_MODULE_USE_EXTERNAL_VTK_libproj=ON
+		)
+	fi
+
+	if use tbb; then
+		mycmakeargs+=(
+			-DVTK_SMP_IMPLEMENTATION_TYPE="TBB"
+			-DVTKm_ENABLE_TBB=ON
+		)
+	fi
+
+	if use test; then
+		ewarn "Testing requires VTK_FORBID_DOWNLOADS=OFF by upstream."
+		ewarn "Care has been taken to pre-download all required files."
+		ewarn "In case you find missing files, please inform me."
+		mycmakeargs+=(
+			-DVTK_BUILD_TESTING=ON
+			-DVTK_DATA_EXCLUDE_FROM_ALL=ON
+			-DVTK_FORBID_DOWNLOADS=OFF
+		)
+	else
+		mycmakeargs+=(
+			-DVTK_BUILD_TESTING=OFF
+			-DVTK_FORBID_DOWNLOADS=ON
+		)
+	fi
+
+	if use theora; then
+		mycmakeargs+=( -DVTK_MODULE_ENABLE_VTK_IOOggTheora="WANT" )
+	fi
+
+	if use all-modules; then
+		mycmakeargs+=(
+			-DVTK_ENABLE_OSPRAY=OFF
+			-DVTK_MODULE_ENABLE_VTK_DomainsMicroscopy="DONT_WANT"
+			-DVTK_MODULE_ENABLE_VTK_FiltersOpenTURNS="DONT_WANT"
+			-DVTK_MODULE_ENABLE_VTK_IOADIOS2="DONT_WANT"
+			-DVTK_MODULE_ENABLE_VTK_IOPDAL="DONT_WANT"
+			-DVTK_MODULE_ENABLE_VTK_MomentInvariants="DONT_WANT"
+			-DVTK_MODULE_ENABLE_VTK_PoissonReconstruction="DONT_WANT"
+			-DVTK_MODULE_ENABLE_VTK_Powercrust="DONT_WANT"
+			-DVTK_MODULE_ENABLE_VTK_RenderingOpenVR="DONT_WANT"
+			-DVTK_MODULE_ENABLE_VTK_SignedTensor="DONT_WANT"
+			-DVTK_MODULE_ENABLE_VTK_SplineDrivenImageSlicer="DONT_WANT"
+			-DVTK_MODULE_ENABLE_VTK_vtkDICOM="DONT_WANT"
+			-DVTK_MODULE_USE_EXTERNAL_vtkkissfft=ON
+		)
+	fi
+
+	use java && export JAVA_HOME="${EPREFIX}/etc/java-config-2/current-system-vm"
+
+	if use mpi; then
+		export CC=mpicc
+		export CXX=mpicxx
+		export FC=mpif90
+		export F90=mpif90
+		export F77=mpif77
+	fi
+
+	cmake_src_configure
+}
+
+src_test() {
+	nonfatal virtx cmake_src_test
+}
+
+src_install() {
+	use web && webapp_src_preinst
+
+	# Stop web page images from being compressed
+	if use doc; then
+		HTML_DOCS=( "${WORKDIR}/html/." )
+	fi
+
+	cmake_src_install
+
+	use java && java-pkg_regjar "${ED}"/usr/share/${PN}/${PN}.jar
+
+	# install examples
+	if use examples; then
+		einfo "Installing examples"
+		mv -v {E,e}xamples || die
+		dodoc -r examples
+		docompress -x /usr/share/doc/${PF}/examples
+
+		einfo "Installing datafiles"
+		insinto /usr/share/${PN}/data
+		doins -r "${S}/.ExternalData"
+	fi
+
+	# with MPI runpath's are not deleted properly
+	if use mpi; then
+		chrpath -d "${ED}"/usr/$(get_libdir)/*.so.${PV} || die
+	fi
+
+	use python && python_optimize
+
+	# environment
+	cat >> "${T}"/40${PN} <<- EOF || die
+		VTK_DATA_ROOT=${EPREFIX}/usr/share/${PN}/data
+		VTK_DIR=${EPREFIX}/usr/$(get_libdir)/${PN}
+		VTKHOME=${EPREFIX}/usr
+		EOF
+	doenvd "${T}"/40${PN}
+
+	use web && webapp_src_install
+
+	# Temporary!
+	# Avoid collision with paraview.
+	# bug #793221
+	rm -rf "${ED}"/usr/share/vtkm-1.5/VTKm{LICENSE.txt,README.md} || die
+}
+
+# webapp.eclass exports these but we want it optional #534036
+pkg_postinst() {
+	use web && webapp_pkg_postinst
+
+	if use examples; then
+		einfo "You can get more and updated examples at"
+		einfo "https://kitware.github.io/vtk-examples/site/"
+	fi
+}
+
+pkg_prerm() {
+	use web && webapp_pkg_prerm
+}