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authorDavid Seifert <soap@gentoo.org>2020-11-01 19:35:56 +0100
committerDavid Seifert <soap@gentoo.org>2020-11-01 19:35:56 +0100
commit5e71680b7a85431b46e92a2bb86e9f0507fcee3e (patch)
treeba38b9eeee161154b3c5126fdd267b906971bd24 /sci-biology/paml
parentsci-biology/paml: Version bump to 4.9j (diff)
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sci-biology/paml: Remove old 4.4c-r1
Closes: https://bugs.gentoo.org/706708 Package-Manager: Portage-3.0.8, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology/paml')
-rw-r--r--sci-biology/paml/Manifest1
-rw-r--r--sci-biology/paml/paml-4.4c-r1.ebuild47
2 files changed, 0 insertions, 48 deletions
diff --git a/sci-biology/paml/Manifest b/sci-biology/paml/Manifest
index e0bf2de61716..87d673016fbe 100644
--- a/sci-biology/paml/Manifest
+++ b/sci-biology/paml/Manifest
@@ -1,2 +1 @@
-DIST paml4.4c.tar.gz 2891715 BLAKE2B 04449b80e4fec080eabb69108d399a32278fcc79221e3c0d087ad1d978517ae2655bce8c300260dfb99d4d60700369ec338fa71c1d48f41a82017dbd3cae2397 SHA512 6a5f6d5baa91afa924ea392b76e59db6691fa9d6ee13a248dfe6e46d3fc83178ce41c2991de1c4cdb21952ee53771298aa0c62060f47d0dd84eaa76eb533498a
DIST paml4.9j.tgz 6380272 BLAKE2B 58fc40904aff6ae539613e772fc0525b557c1e72c1a7a1d95176987bafed8771624ae6c53803bc71c5821a52de8212a49ad99c02c408870ec929c15b6bf217e0 SHA512 c5f3c42409bbaf5ac67c816a245f1d3175ee449dcf10232d9de539130341f80f85ae53518cbca549b1f42ddf64a6e8140a22b9da091d458b425512f11f8c1758
diff --git a/sci-biology/paml/paml-4.4c-r1.ebuild b/sci-biology/paml/paml-4.4c-r1.ebuild
deleted file mode 100644
index 27fe5ed4c769..000000000000
--- a/sci-biology/paml/paml-4.4c-r1.ebuild
+++ /dev/null
@@ -1,47 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit toolchain-funcs versionator
-
-MY_P=$(version_format_string '${PN}$1$2')
-
-DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood"
-HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html"
-SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz"
-
-LICENSE="free-noncomm"
-SLOT="0"
-KEYWORDS="amd64 x86"
-IUSE=""
-
-S=${WORKDIR}/${MY_P}
-
-src_prepare() {
- # Notice send by mail to prof. Ziheng Yang
- sed -i "s/\$(CC)/& \$(LDFLAGS)/" src/Makefile || die #335608
-}
-
-src_compile() {
- emake -C src \
- CC="$(tc-getCC)" \
- CFLAGS="${CFLAGS} -Wno-unused-result" \
- LDFLAGS="${LDFLAGS}"
-}
-
-src_install() {
- dodoc README.txt doc/*
-
- insinto /usr/share/${PN}/control
- doins *.ctl
-
- insinto /usr/share/${PN}/dat
- doins stewart* *.dat dat/*
-
- insinto /usr/share/${PN}
- doins -r examples/
-
- cd src || die
- dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2
-}