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# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.4.0_alpha.ebuild,v 1.2 2010/10/02 15:08:42 dilfridge Exp $
EAPI="3"
inherit eutils toolchain-funcs versionator
DESCRIPTION="Intelligent algorithms for DNA searches"
HOMEPAGE="http://www.ebi.ac.uk/Wise2/"
SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/${PN}2/${PN}$(delete_version_separator 3).tar.gz"
LICENSE="BSD"
SLOT="0"
IUSE="doc"
KEYWORDS="~alpha ~amd64 ~ia64 ~sparc ~x86"
RDEPEND="~sci-biology/hmmer-2.3.2"
DEPEND="
${RDEPEND}
app-shells/tcsh
dev-lang/perl
virtual/latex-base"
S="${WORKDIR}"/${PN}$(delete_version_separator 3)
src_prepare() {
epatch "${FILESDIR}"/${P}-glibc-2.10.patch
epatch "${FILESDIR}"/${P}-cflags.patch
cd "${S}"/docs
cat "${S}"/src/models/*.tex "${S}"/src/dynlibsrc/*.tex | perl gettex.pl > temp.tex
cat wise2api.tex temp.tex apiend.tex > api.tex
epatch "${FILESDIR}"/${PN}-api.tex.patch
}
src_compile() {
emake \
-C src \
CC="$(tc-getCC)" \
all || die
if use doc; then
cd "${S}"/docs
for i in api appendix dynamite wise2 wise3arch; do
latex ${i} || die
latex ${i} || die
dvips ${i}.dvi -o || die
done
fi
}
src_test() {
cd "${S}"/src
WISECONFIGDIR="${S}/wisecfg" make test || die
}
src_install() {
dobin "${S}"/src/bin/* || die "Failed to install program"
dolib.a "${S}"/src/base/libwisebase.a || die "Failed to install libwisebase"
dolib.a "${S}"/src/dynlibsrc/libdyna.a || die "Failed to install libdyna"
dobin "${S}"/src/dynlibsrc/testgendb || die "Failed to install testgendb"
dolib.a "${S}"/src/models/libmodel.a || die "Failed to install libmodel"
insinto /usr/share/${PN}
doins -r "${S}"/wisecfg || die "Failed to install wisecfg"
if use doc; then
insinto /usr/share/doc/${PF}
doins "${S}"/docs/*.ps || die "Failed to install documentation"
fi
newenvd "${FILESDIR}"/${PN}-env 24wise || die "Failed to install env file"
}
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