diff options
Diffstat (limited to 'sci-biology/paml/paml-4.4c.ebuild')
-rw-r--r-- | sci-biology/paml/paml-4.4c.ebuild | 43 |
1 files changed, 43 insertions, 0 deletions
diff --git a/sci-biology/paml/paml-4.4c.ebuild b/sci-biology/paml/paml-4.4c.ebuild new file mode 100644 index 000000000000..c828da151cae --- /dev/null +++ b/sci-biology/paml/paml-4.4c.ebuild @@ -0,0 +1,43 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4.4c.ebuild,v 1.1 2010/09/02 06:56:14 xarthisius Exp $ + +EAPI="2" + +inherit toolchain-funcs versionator + +MY_P=$(version_format_string '${PN}$1$2') + +DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood" +HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html" +SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz" + +LICENSE="free-noncomm" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +S=${WORKDIR}/${MY_P} + +src_prepare() { + # Notice send by mail to prof. Ziheng Yang + sed -i "s/\$(CC)/& \$(LDFLAGS)/" src/Makefile || die #335608 +} + +src_compile() { + emake -C src CC="$(tc-getCC)" \ + CFLAGS="${CFLAGS}" LDFLAGS="${LDFLAGS}" || die +} + +src_install() { + pushd "${S}"/src + dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 || die + popd + dodoc README.txt doc/* || die + insinto /usr/share/${PN}/control + doins *.ctl || die "Failed to install control files" + insinto /usr/share/${PN}/dat + doins stewart* *.dat dat/* || die "Failed to install data files" + insinto /usr/share/${PN} + doins -r examples/ || die "Failed to install examples" +} |