version bump

Package-Manager: portage-2.2.7/cvs/Linux x86_64
Manifest-Sign-Key: 0xE73C35B3

6 files changed, 320 insertions, 10 deletions

diff --git a/sci-mathematics/rstudio/ChangeLog b/sci-mathematics/rstudio/ChangeLog
index ae8c592888f2..33b26538eef5 100644
--- a/sci-mathematics/rstudio/ChangeLog
+++ b/sci-mathematics/rstudio/ChangeLog
@@ -1,6 +1,14 @@
 # ChangeLog for sci-mathematics/rstudio
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/rstudio/ChangeLog,v 1.7 2013/07/16 11:39:28 hasufell Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/rstudio/ChangeLog,v 1.8 2013/12/14 13:43:05 hasufell Exp $
+
+*rstudio-0.98.490 (14 Dec 2013)
+
+  14 Dec 2013; Julian Ospald <hasufell@gentoo.org>
+  +files/rstudio-0.98.490-linker_flags.patch,
+  +files/rstudio-0.98.490-paths.patch, +files/rstudio-0.98.490-prefs.patch,
+  +rstudio-0.98.490.ebuild:
+  version bump
 
 *rstudio-0.97.551 (16 Jul 2013)
 
diff --git a/sci-mathematics/rstudio/Manifest b/sci-mathematics/rstudio/Manifest
index f0a509bdf4b3..32bd69bb8008 100644
--- a/sci-mathematics/rstudio/Manifest
+++ b/sci-mathematics/rstudio/Manifest
@@ -12,26 +12,32 @@ AUX rstudio-0.97.551-boost-1.53.patch 3048 SHA256 86290a2a4ac39cae8de988739c702f
 AUX rstudio-0.97.551-linker_flags.patch 806 SHA256 9fa104ef1fc659aeda8108d2a6418679685ae8d0a19e3f5f97a634ad1d1d05d8 SHA512 2049077768ef72faf502387b5eeef80948d0ec748bc52df7bff6e507dd92a8c52b3a7f7f82eda526ea1289f16720ae51fd40c059bd2d04f5eacd51911b995f06 WHIRLPOOL df36ec2fd3c3e9bced79b6f29ecfbeebde8df6a7873f5de8d46ac0ca7f26c7851426c8b869de12ad302d7c152fa2212af25ed4b52e123f324d92cc7085e6e772
 AUX rstudio-0.97.551-paths.patch 5543 SHA256 376b0ba06c3744902b14ce644d481b1a61cd030981faaaadacbf20fa8dea7857 SHA512 42063474152f0c044f9afea3e93812ddae98de012a7f2d3d1b5f23b95353538b97c584bd6e61c8eb5d314b63b4af6161d7088037a8210687c31fd64d53788a4d WHIRLPOOL a028f30c1b5ce8e3773cee2099c683bb2fbe1f0b16ddf45a5bffba499c8460f078ffe25c9b64a8b774464ea72ea71b8cb11f1623789e82c21b897825c650e3ea
 AUX rstudio-0.97.551-prefs.patch 1008 SHA256 ae5bcb603cdd112adb9f5929b9cf15b33db36a9f9efc76bd24fb67855e99150f SHA512 2edd5dee1d59ed2abc64c2f68f354bd0c2d23de649790e956112131988de68d649a09ce9cd893d2715f656e90cabfee8a67f9ef98464b5fc2a6eb17d29e4a50e WHIRLPOOL 83f7f85f2c40a21697db1a5af9f28de80a802005e910a78905b4b45d66accfec03e67fb1c35cc7091eedf9f7d98bcd89e427e200b999edf1b206e1115fe2aac7
+AUX rstudio-0.98.490-linker_flags.patch 806 SHA256 9fa104ef1fc659aeda8108d2a6418679685ae8d0a19e3f5f97a634ad1d1d05d8 SHA512 2049077768ef72faf502387b5eeef80948d0ec748bc52df7bff6e507dd92a8c52b3a7f7f82eda526ea1289f16720ae51fd40c059bd2d04f5eacd51911b995f06 WHIRLPOOL df36ec2fd3c3e9bced79b6f29ecfbeebde8df6a7873f5de8d46ac0ca7f26c7851426c8b869de12ad302d7c152fa2212af25ed4b52e123f324d92cc7085e6e772
+AUX rstudio-0.98.490-paths.patch 6156 SHA256 28b21281aa3b02fc2921e06b20a1778f7a85b2973da5d88c6b3eaff0d5957b8f SHA512 3e74bea76654ccf342dab95a61f8cd982faf0073c3fe70c0f13a31382a0349d2d0b79c400f89c760c73c45187e5c57a99e4ab8c546ef7e0cf7eb5a1b22e4dda5 WHIRLPOOL 097edbab026ce6daa4edf30c4d111f54bb711e2561e4b561c26d06a0093b52c7f149c59ff4d95fe616e692c4dabddd86a35c7af435e7de5fe86c694d90b11a20
+AUX rstudio-0.98.490-prefs.patch 1008 SHA256 ae5bcb603cdd112adb9f5929b9cf15b33db36a9f9efc76bd24fb67855e99150f SHA512 2edd5dee1d59ed2abc64c2f68f354bd0c2d23de649790e956112131988de68d649a09ce9cd893d2715f656e90cabfee8a67f9ef98464b5fc2a6eb17d29e4a50e WHIRLPOOL 83f7f85f2c40a21697db1a5af9f28de80a802005e910a78905b4b45d66accfec03e67fb1c35cc7091eedf9f7d98bcd89e427e200b999edf1b206e1115fe2aac7
 AUX rstudio-rserver.initd 376 SHA256 b35b3807e7748a372b9968ce35d0adf5a72641c7f1c3551af3c8d14f84cfefec SHA512 1ff6fa9078841a885e080cae62d12478cc536333059ab850516cd8de405378188b6d503ce1edf6afaead85cf96466d71befb239cf4691d6f103fc4fcc88d47de WHIRLPOOL 464346a10ac2843c1b75145793fafc4fe5432d9dc254c94964d0c2486edfbf462f9a5901af4a48a04075262037d182faa9d6aba18f0099e618fa983c4ea5255b
 DIST core-dictionaries.zip 876339 SHA256 4341a9630efb9dcf7f215c324136407f3b3d6003e1c96f2e5e1f9f14d5787494 SHA512 9c5830cc9fed575e223f1c61f02e48c5aea6801bb0cd2586f02437c17fdffdb1d36c396d5a8ecbe02ba01196e73458304345b1f6b92c052bc7a7d05961fac2c9 WHIRLPOOL 316dced8ac46e4216613b0b850c33d4c1e10ef0ecd954d786eb131ea80b34e66ba3d39a0ef25b45230b64ded415737ddabef8f7d68f4d42caea98679cff44ee0
 DIST gin-1.5.zip 1055663 SHA256 f561f4eb5d5fe1cff95c881e6aed53a86e9f0de8a52863295a8600375f96ab94 SHA512 3f6649565f9600daaca6ddf3fb431925b5a1ce1ada38e6389de64cef617abba9d3f49c555d0a20053fb06f17ccbe4e1141b39966fbe4b2975d7b120377504897 WHIRLPOOL e66d348ed275eb20518369c39592a5a03ee4257422e2947520385377939de65a54d131332818362a47597392026db48ed1332f11ae218e336798498ae5d5b196
 DIST gwt-2.5.0.rc1.zip 104156555 SHA256 83a6dec583d1b7f3bf3fd2e321d89c1d95881eed1f81c7ea4056201fc105258b SHA512 c0c4f502b4ca191537eada53eb0458c0d33282661423f6d2648e6107ed8e38465b189377fcd0d9babcbf2c688e16080d33cbd7165ed20dafda7fedc39a74e163 WHIRLPOOL b37f12d1937b6479b97e274a59a1856dcf0c5cc3b767b6a19f65d7807e1f32cc2483358f1414c4c9e427d890eb1e0617fe8af84c6f0dca4a9ded64ae5ffde129
+DIST gwt-2.5.1.zip 111070580 SHA256 c457df45a3eed582452c5784ed11746685df494c0ffe4a8ae4de52945916593a SHA512 845c6bc6ce5ade57eeddd8b40cc3458f5e7d40d881cb4017615897eebd5349bfecfef8cd3e3b05a09b33ecf9ee0262d4a84700b0965a27b40cb60d701457a7ea WHIRLPOOL 9d820026e97f96402fc6b69a06f24d2f79df830a0afdba808ab98f14a32312bc999692ad5822005acf6fdcd1b4261918a318f9f20980c640cf32292d5df83a05
 DIST rstudio-0.97.318.tar.gz 12597967 SHA256 170782aeee1c92e877abbac141b1516d52875f699b4dbfed44fe8f97f831beae SHA512 510e44c569809193cc0bf9b2cbdc80315671e245aa0871941dd93e7c9c435be03a4bf5aa29d2ce14b7cd1da2e67c0ddc8621fb025d3958d2c5ab00713d7c0c2f WHIRLPOOL 33e298ec68ce7600cd622e74801fe1d0a08e97f776aa3f22f4303258b1380b822236f41d99a4cd6956bd6cef07ab5a03b8a16ed7d09e9342745ebfc38c510eee
 DIST rstudio-0.97.336.tar.gz 12598580 SHA256 e6c24d6a865827d3a39e64508976a825bba705efe0921eb06f9a95ba58aefcd1 SHA512 bfaf6218cb400e83a97a320cf633e4656f1552e27bb9843fda1837945a3823fb0df20a2c86e0b6d76608d98806b0acf163aaba10783c923ef900b3eaf03b7569 WHIRLPOOL eca7b837ccff6cc6595298c3137f8663c0754256763a1d049e44a11e10daf53914234c426e004cc1f0158d7b4a38319f61653f78785c7189a64413fc196848c2
 DIST rstudio-0.97.551.tar.gz 12602738 SHA256 caed5f6b6ec57139ddf550dc2f51c1f9a74b39b81b878863b97e1a12edecf498 SHA512 f855a5ba3a86e44c870a4843e94678a1f6eeedc49934d8ad42f202815f93d282913a0be739435be63e510a6ec81b7a1436e4c911acbff955f5fb28b78b00fd10 WHIRLPOOL d8cd3d2978b690fc8c83696cb2017748e74b38309174ac85d6d35d5a1dd91d8e0d8ea06177b349754b3be9eb5e78e04b1d23b82f9e7940d062b262c1eb7eb58e
+DIST rstudio-0.98.490.tar.gz 14989329 SHA256 e38296a10b12c9e769a8be0545c36745999b9ba90942f7ffb6d27f05192a7f93 SHA512 b167083eb4adf1203da63299e61c9e3f40b8aeb4728d25c9d840f8a22659aad8de442dbba3a68e7d11f6157680d3a3636f6d5fecbabab82fd8d1a8278e3f1cb1 WHIRLPOOL d7c07aea3aef424aa9fa05f74b8222cae69b9ce287ba67d80591dc2a433471e7127d975119667560bf6667190d128b0ffcf82f641792075dacf826f4d76df568
 EBUILD rstudio-0.97.318.ebuild 3667 SHA256 52127d40e3e5b3650b1c4d9bb96bef1f7803baae9b65ff3741331a27e103e7a5 SHA512 abb66dc495f05134ee73f1060b64bfa9064afce5648c854a56915dad1a2db1c1dba7cc56b225fb8854ad88093610e3c04717f3cccbf22ae380adeac3e393d20b WHIRLPOOL b968731766f6c9f3a633742f6e34962f06bba166e14a3b38477fa0234b5765b04237c1db0eb6353a63a1aa24ffaead6914302d213e422a7fee796c40ab3efa12
 EBUILD rstudio-0.97.336.ebuild 3707 SHA256 e709f04ac75823cb9029466ac2a08fb8408bc6ba5672ad6dc9e28ed58a7ede10 SHA512 ae560ef23734634f2b81283322cb0d45393f55a508f0cfca9b8c94ff8c0e6534eeed027fd10369dc78390b38165725dbdc55a95f01bc2bbd8d66ee309e9998ae WHIRLPOOL eecc5cb0000682d08ed2109ac14846e8ddd36eca4d5f32faffa0a4822d4dee714fa921e46feb4f92889af29535dc75c5c3009f3fc23da3161e5f635ea01e6f7b
 EBUILD rstudio-0.97.551.ebuild 3707 SHA256 6aea8df78879ff50ed6b2a96b595c3a981ead48aeaab2b4177d7ad8422c09f95 SHA512 6f9866bc65f46d0a703f0d049086986fc2ba4d63c3f018390f04b220172d4fa127e6143a0d5965975b7baafc517e9ec9fddd9a92e8b7a878d8f87e09d799e970 WHIRLPOOL 08e77287bf7cd69b3d07af4b048af1fefb857aac6096d562d9d9c0aca5b2b5f7c5f021af047818cfaecd08beaf1d7d17a9b117506cc4f6e3834250d150789170
-MISC ChangeLog 2116 SHA256 056566bf38beb6bccf6f1b5b189224f52d19b9f9d0b4b5d475ab8b0330cd80e4 SHA512 b4f8e63bd4e4268b9f265b96ef333e1c8974aea01cda31954cf2e2bbae9661ee1c8107769b26c3b82b3549d10f3b94176a89de6b8baf240df17473426de109a7 WHIRLPOOL e8136792528794fff5f7571c8678ab45477097cc7df7671051c2db127860cb74559adde38d5614331381d861cfddc9f3d4912f410845eec3d0cc3e2d73e0b908
+EBUILD rstudio-0.98.490.ebuild 3627 SHA256 624745d5c370e86ba3dd643e98532b5ca733a09120a2f82dea446deb5f8f949a SHA512 bd072f63fcbb36b2d550faaf98c9ca1fbc5cc9f576f35e6dcc98613e7297552f9c81f359dbf7427e64fa9e77e8603279963f33a4e785cf32b47ded41f46fcadb WHIRLPOOL a8b68838987eb300608be3dbe1f57245f5d8edd46bafb1165d17ec6f353ad136fd890ea445f187f71a34a5479d903314ac851c1428a180edc12e6f7a33a9b051
+MISC ChangeLog 2366 SHA256 466a5973e20a37d29de583ddf6571a53d00044fe5f9e9571460b3c1358fb56f4 SHA512 58a2bbe7b4149912689219c1c9e91c5c581b43b7ca53b681a7142b25c97b337c66b24475c114ce1bf42f71b92fcec3d623b7a62347fa6ba405d9667a261cc9ae WHIRLPOOL 450fc7dd71a1f3ccacec33163591fb923c2ae6c5a33bb6c044f2492b2528b375be1bf69d239b16c167f537107653082952b3f0eb160716917c09302b5be6f920
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diff --git a/sci-mathematics/rstudio/files/rstudio-0.98.490-linker_flags.patch b/sci-mathematics/rstudio/files/rstudio-0.98.490-linker_flags.patch
new file mode 100644
index 000000000000..a336fccbc981
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-0.98.490-linker_flags.patch
@@ -0,0 +1,18 @@
+Some gcc hardening options were added, however since we add
+"-Wl,--as-needed" we end up with "-Wl,--as-needed;-Wl,-z,relro" which
+leads to linker errors about unknown options, if we make it so the
+as-needed option is the last option on the line, everything is fine.
+
+diff --git a/src/cpp/CMakeLists.txt b/src/cpp/CMakeLists.txt
+index 0589ca0..fe5bd5f 100644
+--- a/src/cpp/CMakeLists.txt
++++ b/src/cpp/CMakeLists.txt
+@@ -57,7 +57,7 @@ if(UNIX)
+       add_definitions(-D_FORTIFY_SOURCE=2)
+       add_definitions(-fstack-protector --param ssp-buffer-size=4)
+       add_definitions(-pie -fPIE)
+-      set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -Wl,-z,relro,-z,now")
++      set(CMAKE_EXE_LINKER_FLAGS "-Wl,-z,relro,-z,now ${CMAKE_EXE_LINKER_FLAGS}")
+    endif()
+ 
+ # Win32 specific global directives
diff --git a/sci-mathematics/rstudio/files/rstudio-0.98.490-paths.patch b/sci-mathematics/rstudio/files/rstudio-0.98.490-paths.patch
new file mode 100644
index 000000000000..d28ad5cb0752
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-0.98.490-paths.patch
@@ -0,0 +1,120 @@
+diff --git a/CMakeGlobals.txt b/CMakeGlobals.txt
+index cc10191..f75b85a 100644
+--- a/CMakeGlobals.txt
++++ b/CMakeGlobals.txt
+@@ -105,7 +105,7 @@ else()
+    else()
+      set(RSTUDIO_INSTALL_BIN bin)
+    endif()
+-   set(RSTUDIO_INSTALL_SUPPORTING .)
++   set(RSTUDIO_INSTALL_SUPPORTING ${DISTRO_SHARE})
+ endif()
+ 
+ # if the install prefix is /usr/local then tweak as appropriate
+diff --git a/src/cpp/server/CMakeLists.txt b/src/cpp/server/CMakeLists.txt
+index 184e514..d09aac5 100644
+--- a/src/cpp/server/CMakeLists.txt
++++ b/src/cpp/server/CMakeLists.txt
+@@ -145,7 +145,7 @@ if (UNIX AND NOT APPLE)
+    configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT}.in
+                   ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT})
+    install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT}
+-           DESTINATION ${RSERVER_INITD_DEBIAN_DIR})
++           DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_DEBIAN_DIR})
+ 
+    # install configured redhat init.d script
+    set(RSERVER_INITD_REDHAT_DIR "extras/init.d/redhat")
+@@ -153,7 +153,7 @@ if (UNIX AND NOT APPLE)
+    configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_REDHAT_SCRIPT}.in
+                   ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_REDHAT_SCRIPT})
+    install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_REDHAT_SCRIPT}
+-           DESTINATION ${RSERVER_INITD_REDHAT_DIR})
++           DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_REDHAT_DIR})
+ 
+    # install configured suse init.d script
+    set(RSERVER_INITD_SUSE_DIR "extras/init.d/suse")
+@@ -161,13 +161,13 @@ if (UNIX AND NOT APPLE)
+    configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_SUSE_SCRIPT}.in
+                   ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_SUSE_SCRIPT})
+    install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_SUSE_SCRIPT}
+-           DESTINATION ${RSERVER_INITD_SUSE_DIR})
++           DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_SUSE_DIR})
+ 
+    # install pam profile
+    set(RSERVER_PAM_DIR "extras/pam")
+    set(RSERVER_PAM_PROFILE "${RSERVER_PAM_DIR}/rstudio")
+    install(FILES ${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_PAM_PROFILE}
+-           DESTINATION ${RSERVER_PAM_DIR})
++           DESTINATION ${DISTRO_SHARE}/${RSERVER_PAM_DIR})
+ 
+    # install configured apparmor profile
+    set(RSERVER_APPARMOR_DIR "extras/apparmor")
+@@ -175,9 +175,9 @@ if (UNIX AND NOT APPLE)
+    configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_APPARMOR_PROFILE}.in
+                   ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_APPARMOR_PROFILE})
+    install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_APPARMOR_PROFILE}
+-           DESTINATION ${RSERVER_APPARMOR_DIR})
++           DESTINATION ${DISTRO_SHARE}/${RSERVER_APPARMOR_DIR})
+    install(PROGRAMS ${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_APPARMOR_DIR}/apparmor-profile-load
+-           DESTINATION ${RSERVER_APPARMOR_DIR})
++           DESTINATION ${DISTRO_SHARE}/${RSERVER_APPARMOR_DIR})
+ 
+    # install configured upstart profile
+    set(RSERVER_UPSTART_DIR "extras/upstart")
+@@ -185,12 +185,12 @@ if (UNIX AND NOT APPLE)
+    configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_UPSTART_PROFILE}.in
+                   ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE})
+    install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE}
+-           DESTINATION ${RSERVER_UPSTART_DIR})
++           DESTINATION ${DISTRO_SHARE}/${RSERVER_UPSTART_DIR})
+    set(RSERVER_UPSTART_PROFILE_REDHAT "${RSERVER_UPSTART_DIR}/rstudio-server.redhat.conf")
+    configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT}.in
+                   ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT})
+    install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT}
+-           DESTINATION ${RSERVER_UPSTART_DIR})
++           DESTINATION ${DISTRO_SHARE}/${RSERVER_UPSTART_DIR})
+ 
+ endif()
+ 
+diff --git a/src/cpp/server/ServerOptions.cpp b/src/cpp/server/ServerOptions.cpp
+index 1eaf7c0..4b25fa1 100644
+--- a/src/cpp/server/ServerOptions.cpp
++++ b/src/cpp/server/ServerOptions.cpp
+@@ -307,8 +307,8 @@ ProgramStatus Options::read(int argc,
+ 
+    // convert relative paths by completing from the system installation
+    // path (this allows us to be relocatable)
+-   resolvePath(resourcePath, &wwwLocalPath_);
+-   resolvePath(resourcePath, &wwwSymbolMapsPath_);
++   resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwLocalPath_);
++   resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwSymbolMapsPath_);
+    resolvePath(binaryPath, &authPamHelperPath_);
+    resolvePath(binaryPath, &rsessionPath_);
+    resolvePath(binaryPath, &rldpathPath_);
+diff --git a/src/cpp/session/SessionOptions.cpp b/src/cpp/session/SessionOptions.cpp
+index 44b3d55..a48cdb6 100644
+--- a/src/cpp/session/SessionOptions.cpp
++++ b/src/cpp/session/SessionOptions.cpp
+@@ -357,14 +357,14 @@ core::ProgramStatus Options::read(int argc, char * const argv[])
+       timeoutMinutes_ = 0;
+ 
+    // convert relative paths by completing from the app resource path
+-   resolvePath(resourcePath, &rResourcesPath_);
+-   resolvePath(resourcePath, &agreementFilePath_);
+-   resolvePath(resourcePath, &wwwLocalPath_);
+-   resolvePath(resourcePath, &wwwSymbolMapsPath_);
+-   resolvePath(resourcePath, &coreRSourcePath_);
+-   resolvePath(resourcePath, &modulesRSourcePath_);
+-   resolvePath(resourcePath, &sessionLibraryPath_);
+-   resolvePath(resourcePath, &sessionPackagesPath_);
++   resolvePath(resourcePath.childPath(DISTRO_SHARE), &rResourcesPath_);
++   resolvePath(resourcePath.childPath(DISTRO_SHARE), &agreementFilePath_);
++   resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwLocalPath_);
++   resolvePath(resourcePath.childPath(DISTRO_SHARE), &coreRSourcePath_);
++   resolvePath(resourcePath.childPath(DISTRO_SHARE), &modulesRSourcePath_);
++   resolvePath(resourcePath.childPath(DISTRO_SHARE), &sessionLibraryPath_);
++   resolvePath(resourcePath.childPath(DISTRO_SHARE), &sessionPackagesPath_);
++   resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwSymbolMapsPath_);
+    resolvePostbackPath(resourcePath, &rpostbackPath_);
+ #ifdef _WIN32
+    resolvePath(resourcePath, &consoleIoPath_);
diff --git a/sci-mathematics/rstudio/files/rstudio-0.98.490-prefs.patch b/sci-mathematics/rstudio/files/rstudio-0.98.490-prefs.patch
new file mode 100644
index 000000000000..3175d47235ab
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-0.98.490-prefs.patch
@@ -0,0 +1,24 @@
+And now we fix src/gwt/build.xml since java's user preference class is
+braindead and insists on writing where it is not allowed.
+much thanks to http://www.allaboutbalance.com/articles/disableprefs/
+
+diff --git a/src/gwt/build.xml b/src/gwt/build.xml
+index e7d2418..ae3a331 100644
+--- a/src/gwt/build.xml
++++ b/src/gwt/build.xml
+@@ -25,6 +25,7 @@
+    <property name="gwt.extra.args" value=""/>
+    <property name="gwt.main.module" value="org.rstudio.studio.RStudio"/>
+    <property name="ace.bin" value="src/org/rstudio/studio/client/workbench/views/source/editors/text/ace"/>
++   <property environment="env"/>
+ 
+    <path id="project.class.path">
+       <pathelement location="bin"/>
+@@ -109,6 +110,7 @@
+          </classpath>
+          <!-- add jvmarg -Xss16M or similar if you see a StackOverflowError -->
+          <jvmarg value="-Xmx1024M"/>
++         <jvmarg value="-Djava.util.prefs.userRoot=${env.T}"/>
+          <arg value="-war"/>
+          <arg value="www"/>
+          <arg value="-localWorkers"/>
diff --git a/sci-mathematics/rstudio/rstudio-0.98.490.ebuild b/sci-mathematics/rstudio/rstudio-0.98.490.ebuild
new file mode 100644
index 000000000000..c372f2c7ad4b
--- /dev/null
+++ b/sci-mathematics/rstudio/rstudio-0.98.490.ebuild
@@ -0,0 +1,134 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/rstudio/rstudio-0.98.490.ebuild,v 1.1 2013/12/14 13:43:05 hasufell Exp $
+
+EAPI=5
+
+inherit eutils user cmake-utils gnome2-utils pam versionator fdo-mime java-pkg-2
+
+# TODO
+# * package gin and gwt
+# * use dict from tree, linguas
+# * do src_test (use junit from tree?)
+
+GWTVER=2.5.1
+GINVER=1.5
+
+DESCRIPTION="IDE for the R language"
+HOMEPAGE="http://www.rstudio.org"
+SRC_URI="https://github.com/rstudio/rstudio/archive/v${PV}.tar.gz -> ${P}.tar.gz
+	https://s3.amazonaws.com/rstudio-buildtools/gin-${GINVER}.zip
+	https://s3.amazonaws.com/rstudio-buildtools/gwt-${GWTVER}.zip
+	https://s3.amazonaws.com/rstudio-dictionaries/core-dictionaries.zip"
+
+LICENSE="AGPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="dedicated server"
+
+QTVER=4.8
+QTSLOT=4
+RDEPEND=">=dev-lang/R-2.11.1
+	>=dev-libs/boost-1.50
+	dev-libs/mathjax
+	dev-libs/openssl
+	sys-libs/zlib
+	>=virtual/jre-1.5
+	x11-libs/pango
+	!dedicated? (
+		>=dev-qt/qtcore-${QTVER}:${QTSLOT}
+		>=dev-qt/qtdbus-${QTVER}:${QTSLOT}
+		>=dev-qt/qtgui-${QTVER}:${QTSLOT}
+		>=dev-qt/qtwebkit-${QTVER}:${QTSLOT}
+		>=dev-qt/qtxmlpatterns-${QTVER}:${QTSLOT}
+		server? ( virtual/pam )
+	)
+	dedicated? ( virtual/pam )"
+DEPEND="${RDEPEND}
+	app-arch/unzip
+	dev-java/ant-core
+	>=virtual/jdk-1.5
+	virtual/pkgconfig"
+#	test? ( dev-java/junit:4 )
+
+src_unpack() {
+	unpack ${P}.tar.gz gwt-${GWTVER}.zip
+	cd "${S}" || die
+	mkdir -p src/gwt/lib/{gin,gwt} dependencies/common/dictionaries || die
+	mv ../gwt-${GWTVER} src/gwt/lib/gwt/${GWTVER} || die
+	unzip -qd src/gwt/lib/gin/${GINVER} "${DISTDIR}"/gin-${GINVER}.zip || die
+	unzip -qd dependencies/common/dictionaries "${DISTDIR}"/core-dictionaries.zip || die
+}
+
+src_prepare() {
+	java-pkg-2_src_prepare
+
+	find . -name .gitignore -delete || die
+
+	epatch "${FILESDIR}"/${P}-prefs.patch \
+		"${FILESDIR}"/${P}-paths.patch \
+		"${FILESDIR}"/${P}-linker_flags.patch
+
+	# Adding -DDISTRO_SHARE=... to append-flags breaks cmake so using
+	# this sed hack for now. ~RMH
+	sed -i \
+		-e "s|DISTRO_SHARE|\"share/${PN}\"|g" \
+		src/cpp/server/ServerOptions.cpp \
+		src/cpp/session/SessionOptions.cpp || die
+
+	# use mathjax from system
+	ln -sf "${EPREFIX}"/usr/share/mathjax dependencies/common/mathjax || die
+
+	# make sure icons and mime stuff are with prefix
+	sed -i \
+		-e "s:/usr:${EPREFIX}/usr:g" \
+		CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die
+}
+
+src_configure() {
+	export RSTUDIO_VERSION_MAJOR=$(get_version_component_range 1)
+	export RSTUDIO_VERSION_MINOR=$(get_version_component_range 2)
+	export RSTUDIO_VERSION_PATCH=$(get_version_component_range 3)
+
+	local mycmakeargs=(
+		-DDISTRO_SHARE=share/${PN}
+		$(cmake-utils_use !dedicated RSTUDIO_INSTALL_FREEDESKTOP)
+		-DRSTUDIO_TARGET=$(usex dedicated "Server" "$(usex server "All" "Desktop")")
+		)
+
+	cmake-utils_src_configure
+}
+
+src_compile() {
+	cmake-utils_src_compile
+}
+
+src_install() {
+	cmake-utils_src_install
+	if use dedicated || use server; then
+		dopamd src/cpp/server/extras/pam/rstudio
+		newinitd "${FILESDIR}"/rstudio-rserver.initd rstudio-rserver
+	fi
+}
+
+pkg_preinst() {
+	use dedicated || gnome2_icon_savelist
+	java-pkg-2_pkg_preinst
+}
+
+pkg_postinst() {
+	use dedicated || { fdo-mime_desktop_database_update
+		fdo-mime_mime_database_update
+		gnome2_icon_cache_update ;}
+
+	if use dedicated || use server; then
+		enewgroup rstudio-server
+		enewuser rstudio-server -1 -1 -1 rstudio-server
+	fi
+}
+
+pkg_postrm() {
+	use dedicated || { fdo-mime_desktop_database_update
+		fdo-mime_mime_database_update
+		gnome2_icon_cache_update ;}
+}