Initial addition, #250415

Package-Manager: portage-2.2_rc67/cvs/Linux x86_64

1 files changed, 61 insertions, 0 deletions

diff --git a/sci-libs/rosetta-fragments/rosetta-fragments-3.1.ebuild b/sci-libs/rosetta-fragments/rosetta-fragments-3.1.ebuild
new file mode 100644
index 000000000000..65ef698a2138
--- /dev/null
+++ b/sci-libs/rosetta-fragments/rosetta-fragments-3.1.ebuild
@@ -0,0 +1,61 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/rosetta-fragments/rosetta-fragments-3.1.ebuild,v 1.1 2010/05/18 20:40:03 jlec Exp $
+
+EAPI="2"
+
+inherit flag-o-matic fortran
+
+DESCRIPTION="Fragment library for rosetta"
+HOMEPAGE="www.rosettacommons.org"
+SRC_URI="rosetta3.1_fragments.tgz"
+
+LICENSE="rosetta"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RESTRICT="fetch"
+
+RDEPEND="
+	sci-biology/ncbi-tools
+	sci-biology/ncbi-tools++
+	sci-biology/psipred"
+
+S="${WORKDIR}"/${PN/-/_}
+
+FORTRAN="g77 gfortran ifc"
+
+pkg_nofetch() {
+	einfo "Go to ${HOMEPAGE} and get ${PN}.tgz and rename it to ${A}"
+	einfo "which must be placed in ${DISTDIR}"
+}
+
+src_prepare() {
+	epatch "${FILESDIR}"/${PV}-nnmake.patch
+	epatch "${FILESDIR}"/${PV}-chemshift.patch
+}
+
+src_compile() {
+	append-fflags -ffixed-line-length-132
+
+	cd "${S}"/nnmake && \
+	emake || die
+
+	cd "${S}"/chemshift && \
+	emake || die
+}
+
+src_install() {
+	find . -type d -name ".svn" -exec rm -rf '{}' \; 2> /dev/null
+
+	newbin nnmake/pNNMAKE.gnu pNNMAKE && \
+	newbin chemshift/pCHEMSHIFT.gnu pCHEMSHIFT || \
+	die "failed to install the bins"
+
+	dobin nnmake/*.pl || die "no additional perl scripts"
+
+	insinto /usr/share/${PN}
+	doins -r *_database || die
+	dodoc fragments.README nnmake/{nnmake.README,vall/*.pl} chemshift/chemshift.README || die "no docs"
+}