sci-chemistry/pdb2pqr: Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the updated fortran-2.eclass

Package-Manager: portage-2.2.0_alpha141/cvs/Linux x86_64
Manifest-Sign-Key: 0x70EB7916

5 files changed, 38 insertions, 24 deletions

diff --git a/sci-chemistry/pdb2pqr/ChangeLog b/sci-chemistry/pdb2pqr/ChangeLog
index 9f308555ccdd..5bbf9582a6ba 100644
--- a/sci-chemistry/pdb2pqr/ChangeLog
+++ b/sci-chemistry/pdb2pqr/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-chemistry/pdb2pqr
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/ChangeLog,v 1.36 2012/05/11 07:42:54 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/ChangeLog,v 1.37 2012/10/19 10:10:18 jlec Exp $
+
+  19 Oct 2012; Justin Lecher <jlec@gentoo.org> pdb2pqr-1.5.0-r2.ebuild,
+  pdb2pqr-1.7.0.ebuild, pdb2pqr-1.7.0-r2.ebuild:
+  Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the
+  updated fortran-2.eclass
 
 *pdb2pqr-1.7.0-r2 (11 May 2012)
 
diff --git a/sci-chemistry/pdb2pqr/Manifest b/sci-chemistry/pdb2pqr/Manifest
index 2d35cca1a3e8..9be28519f990 100644
--- a/sci-chemistry/pdb2pqr/Manifest
+++ b/sci-chemistry/pdb2pqr/Manifest
@@ -1,21 +1,22 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA512
+Hash: SHA256
 
-AUX 1.7.0-install.patch 5165 RMD160 6937f62cd4035c40d3575455f1faed6114b1bfd2 SHA1 304cdd46d76745e29a8bd00f4bdbd63dbe4b135c SHA256 965c0bf8077eebc733c60d4e80d05167ce31d7188b01ca43c0fb5c0b27ede22b
-AUX pdb2pqr-1.4.0-automagic.patch 3526 RMD160 c4d662e68352d93f913fdc83b5c733a555a9bc17 SHA1 64598bff69e627a27ffa550ad5f3b38898a3a9cf SHA256 f145bc6222d56410035240e2d8be9fbbb0d70dabccad5c5efc5d4dacd602670a
-AUX pdb2pqr-1.4.0-install.patch 5372 RMD160 8d6c5f3c85ceea0562a767a3792228e6ff0eee96 SHA1 77a70693687be8d14eb3221ffc62a3daccc38f8e SHA256 e93025a88b5d6fff6e1fb45471471aef006d3074ece0b9cd9ff781736a2f1643
-AUX pdb2pqr-1.4.0-ldflags.patch 1293 RMD160 47c2e4b484cf0936176683342afa6e89bb0b0712 SHA1 6c9088bbbf87a91c28fe6fdd39b3db097143f103 SHA256 cfab690b3c128b2c65e217893b546d6e56ffb2ffd7110872f352d6243f56f726
-DIST pdb2pqr-1.5.tar.gz 5747178 RMD160 543545513811bae058e23cfe1f24e02eaa094b87 SHA1 5249064cf4ebfb2291a382121ecea4d457e65e6a SHA256 2a83433b50a57aa0a05102c425cd7b4bb6750487327195ab719992f4186281c5
-DIST pdb2pqr-1.7.tar.gz 6906538 RMD160 606fd8451c52e642a08d5f6c7cdcd51659ea57bc SHA1 23a0a0a5ed54b55269b60b4c4161d914cb30ecca SHA256 8d27f2df430c40b99cde7952d0e96e72e433871a289d39c970b5eefe34345757
-EBUILD pdb2pqr-1.5.0-r2.ebuild 3629 RMD160 494b644fbe6a829186438715a8b2e0bcfcac1c69 SHA1 2e77a76d193679ec0aefe2d9e8bf617c96de1787 SHA256 b64a8f88adc2239f1c13f311dbaae1da7b015dcbd5f1a4ea2b47b783f5f6b5df
-EBUILD pdb2pqr-1.7.0-r2.ebuild 3855 RMD160 f2379d1d8c640c904bd5665ac74d47b143b8083c SHA1 d7beb5cba6fe131af7b370b1a9b7499682fcea66 SHA256 94fcf8d2ed3731b5d8270e99a4868ed377ecccf6c5d17acbeefc5da631b3470f
-EBUILD pdb2pqr-1.7.0.ebuild 3622 RMD160 320195cc0488d4a41e4e4c3c96e92c17a12d239f SHA1 d8705cc367ddc706d21d934f8eb0bed9007e8f0b SHA256 22ebf71c720e38672c7e6019b6489b554fe989cbebcf3e651fed49940884f8a0
-MISC ChangeLog 5868 RMD160 1f456e06c31c53a539093728a09806e3e2b4c9e2 SHA1 8352aeb68119a944a26bb66e1f05dd013d41bb9f SHA256 98e279ddccefaafd2add81ffc23e1f58cf8c937ab12654a369aec7fe9b263e67
-MISC metadata.xml 305 RMD160 acae1add34cc228a42d6594c19d9b054bea0c14a SHA1 327265beabbfc4937ba143c6958ea89c639c8148 SHA256 5239d437369038113c15797a9a6074c6ed5e5577154dc8e992ac9634c54ab44b
+AUX 1.7.0-install.patch 5165 SHA256 965c0bf8077eebc733c60d4e80d05167ce31d7188b01ca43c0fb5c0b27ede22b SHA512 72f290d8df7051f0fc2d42543f0d09fef4350656194f5013f132abb7edbe4dc11f18a3329bbd41b86f9a582b170fea53d472be320f5e08a2f0d84d42b4f4639c WHIRLPOOL ea71e6271c0dd491a7778cf3c0f54ebce79f35680abb49eadfbb6208379b1d5c69b18eacde92183bd005ffad26db115b05f69b7cbcf5256fa72d94caab9509c4
+AUX pdb2pqr-1.4.0-automagic.patch 3526 SHA256 f145bc6222d56410035240e2d8be9fbbb0d70dabccad5c5efc5d4dacd602670a SHA512 dfb5a219fabe4b57da82098c80eb6556e6826cd91d3db2da2e858964180cfe3268314562320159b82dc811a08714ca3a0e78881244949ff7ffeef2f797397237 WHIRLPOOL 03061ecbab813a572f18a794609655aa9ad9a16d6ed10c421437dddac589de750adacdfe2f89b17e022cccf0ffe0018a40bbe2e7f37c692d025f6998088364af
+AUX pdb2pqr-1.4.0-install.patch 5372 SHA256 e93025a88b5d6fff6e1fb45471471aef006d3074ece0b9cd9ff781736a2f1643 SHA512 615e984335d67668689423d4ab37be996cb178450a2ae0782432d47d7be2cfa8aaeb18776e604c706df743d2a30b93bc1febc28722ef7b5b2480545ca3ccd510 WHIRLPOOL c054c12d1c9ed4ad093326736fd74c6af54d7124ef6455120e5bf37a1a683cf1a5d1a9faec7ff323c7512c4bdbd53c703ee305daf6c76847e87aa2b9a58f7b59
+AUX pdb2pqr-1.4.0-ldflags.patch 1293 SHA256 cfab690b3c128b2c65e217893b546d6e56ffb2ffd7110872f352d6243f56f726 SHA512 4edf74ae59b5ca99e2c492103d16769f300293df07f833d78d8e7d24d85c10531ac7907c5444b65507952f4622608459952ae57835f52af8b0f7e09637f1fcf5 WHIRLPOOL 359a84ecaa55cadfa7cf1bb3c116105c486f1fa737d74b6f2ba2f399147dfcd15d088682c75efee7a69394a3f7adf7dc0c978c060ad64c105b3e96a0b75f49d5
+DIST pdb2pqr-1.5.tar.gz 5747178 SHA256 2a83433b50a57aa0a05102c425cd7b4bb6750487327195ab719992f4186281c5
+DIST pdb2pqr-1.7.tar.gz 6906538 SHA256 8d27f2df430c40b99cde7952d0e96e72e433871a289d39c970b5eefe34345757
+EBUILD pdb2pqr-1.5.0-r2.ebuild 3668 SHA256 09b59ed6461c60ca7fdcdca1604306579f054db992b1833226cce00566f05a7a SHA512 2d1ce04378e15d814dfc73d407149465e61b04d646710b918708e4f8eb1a6f1973c85cfca0d63dfa8f85aa6cf1e61b3a950c82833ff7853e2d6d3bc223890f6d WHIRLPOOL 3e4da41f599befa813ec693c8fd2b42ffda163047a43ecbe8f83a3fd63e1066a61e05e56993b2fa3fcc507e652ad60ad3aeca7c6fbb1e967edcc1ead362b943d
+EBUILD pdb2pqr-1.7.0-r2.ebuild 3859 SHA256 3c0213ade23aa4a13f9091ca96d69dc1c4f2eb2b80195759b1b4eb7b3ac5072e SHA512 61f4c29714a428fb956c7cb47c47c8a7d50d4796ef5dd406f88a9336494732d732cef13608fabfd055a78407eaf091fdc548e3c91a0e4547e55c7775e33e83ea WHIRLPOOL 34f203002dded65e8723b9220a310f183fdff28df8069aab1f6f464f6cc3a3a3c44f07fe6e51e043c9d2dcfc2cc98da2bed95eaf73ffc0645746f2640f56b8b7
+EBUILD pdb2pqr-1.7.0.ebuild 3661 SHA256 83a908824110516331cb4e7a8acce26c3992971af13d2514ca0345ab14d3b44f SHA512 f6a942958f120eeee05b9e70751cca487ba06c29a39127f65075936b41521575e089b8c764f53e06a2c286899d4fdf16be9eefc46c0e9942c03ac1c74803c093 WHIRLPOOL dc3c3292217517bb3503fd53313e055ccf008f556eea319b738f88fb82cbc18be1c76099a6dcde4cc32861b8ecf9362554a0039fae896aeacf802e0ae2b05eb4
+MISC ChangeLog 6095 SHA256 e998f25b6bb91374bf45431d917f99149d2bb38212c78613236fe8d8e37b1484 SHA512 9afe45616a6b86de1587ec308604dd85e3dec4c218fa005bf66e449264e9171a7811b0c5265fd745d54dc16a1011fff5d7efcf3df15145f161fa3d5e24375fad WHIRLPOOL f78a826c684f453361c907a9de9a977897128b3f00be6d420d57bcdd05fd0a09c1c7e1f7f4771b62da858dcc96897f51400d40cc4fe5252ca1e552701c59281d
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diff --git a/sci-chemistry/pdb2pqr/pdb2pqr-1.5.0-r2.ebuild b/sci-chemistry/pdb2pqr/pdb2pqr-1.5.0-r2.ebuild
index 4ff724168839..baacac906039 100644
--- a/sci-chemistry/pdb2pqr/pdb2pqr-1.5.0-r2.ebuild
+++ b/sci-chemistry/pdb2pqr/pdb2pqr-1.5.0-r2.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2012 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.5.0-r2.ebuild,v 1.10 2011/06/21 16:02:05 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.5.0-r2.ebuild,v 1.11 2012/10/19 10:10:18 jlec Exp $
 
 EAPI="3"
 
@@ -24,7 +24,6 @@ IUSE="doc examples opal"
 KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux"
 
 RDEPEND="
-	virtual/fortran
 	dev-python/numpy
 	sci-chemistry/openbabel
 	opal? ( dev-python/zsi )"
@@ -32,6 +31,11 @@ DEPEND="${RDEPEND}"
 
 S="${WORKDIR}/${MY_P}"
 
+pkg_setup() {
+	fortran-2_pkg_setup
+	python_pkg_setup
+}
+
 src_prepare() {
 	epatch "${FILESDIR}"/${PN}-1.4.0-ldflags.patch
 	epatch "${FILESDIR}"/${PN}-1.4.0-automagic.patch
diff --git a/sci-chemistry/pdb2pqr/pdb2pqr-1.7.0-r2.ebuild b/sci-chemistry/pdb2pqr/pdb2pqr-1.7.0-r2.ebuild
index 85b3f6e4b19f..ac9f5cf46b9c 100644
--- a/sci-chemistry/pdb2pqr/pdb2pqr-1.7.0-r2.ebuild
+++ b/sci-chemistry/pdb2pqr/pdb2pqr-1.7.0-r2.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2012 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.7.0-r2.ebuild,v 1.1 2012/05/11 07:42:54 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.7.0-r2.ebuild,v 1.2 2012/10/19 10:10:18 jlec Exp $
 
 EAPI=4
 
@@ -24,7 +24,6 @@ IUSE="doc examples opal +pdb2pka"
 KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
 
 RDEPEND="
-	virtual/fortran
 	dev-python/numpy
 	sci-chemistry/openbabel
 	opal? ( dev-python/zsi )
@@ -41,6 +40,7 @@ pkg_setup() {
 		einfo "Allow usage of ${MAXATOMS} during calculations"
 	fi
 	python_pkg_setup
+	fortran-2_pkg_setup
 }
 
 src_prepare() {
diff --git a/sci-chemistry/pdb2pqr/pdb2pqr-1.7.0.ebuild b/sci-chemistry/pdb2pqr/pdb2pqr-1.7.0.ebuild
index 976bbb856a16..180ca27d19d3 100644
--- a/sci-chemistry/pdb2pqr/pdb2pqr-1.7.0.ebuild
+++ b/sci-chemistry/pdb2pqr/pdb2pqr-1.7.0.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2012 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.7.0.ebuild,v 1.8 2011/06/21 16:02:05 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.7.0.ebuild,v 1.9 2012/10/19 10:10:18 jlec Exp $
 
 EAPI="3"
 
@@ -24,7 +24,6 @@ IUSE="doc examples opal"
 KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
 
 RDEPEND="
-	virtual/fortran
 	dev-python/numpy
 	sci-chemistry/openbabel
 	opal? ( dev-python/zsi )"
@@ -32,6 +31,11 @@ DEPEND="${RDEPEND}"
 
 S="${WORKDIR}/${MY_P}"
 
+pkg_setup() {
+	fortran-2_pkg_setup
+	python_pkg_setup
+}
+
 src_prepare() {
 	epatch "${FILESDIR}"/${PN}-1.4.0-ldflags.patch
 	epatch "${FILESDIR}"/${PN}-1.4.0-automagic.patch