sci-chemistry/apbs: Don't runtime libtoolize two times

Package-Manager: portage-2.2.0_alpha101/cvs/Linux x86_64
RepoMan-Options: --force

3 files changed, 11 insertions, 274 deletions

diff --git a/sci-chemistry/apbs/ChangeLog b/sci-chemistry/apbs/ChangeLog
index 2edfd3e6dae6..03fbec96c88c 100644
--- a/sci-chemistry/apbs/ChangeLog
+++ b/sci-chemistry/apbs/ChangeLog
@@ -1,270 +1,7 @@
 # ChangeLog for sci-chemistry/apbs
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.55 2012/01/05 18:51:13 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.56 2012/04/25 16:09:31 jlec Exp $
 
-  05 Jan 2012; Justin Lecher <jlec@gentoo.org> apbs-1.3-r1.ebuild,
-  apbs-1.3-r2.ebuild:
-  Fix for file collitions
-
-*apbs-1.3-r2 (04 Jan 2012)
-
-  04 Jan 2012; Justin Lecher <jlec@gentoo.org> +apbs-1.3-r2.ebuild,
-  +files/apbs-1.3/0001-autoconf-2.68.patch,
-  +files/apbs-1.3/0002-python-linking.patch,
-  +files/apbs-1.3/0003-apbs-1.3-pkg-config-file.patch,
-  +files/apbs-1.3/0004-apbs-1.3-system-zlib.patch,
-  +files/apbs-1.3/0005-apbs-1.3-linking.patch,
-  +files/apbs-1.3/0006-apbs-1.3-clean-targets.patch,
-  +files/apbs-1.3/0007-apbs-1.3-configure.patch,
-  +files/apbs-1.3/0008-apbs-1.3-broken-test.patch,
-  +files/apbs-1.3/0009-apbs-1.3-use-pkg-config-for-zlib-detection.patch,
-  +files/apbs-1.3/0010-apbs-1.3-use-OPENMP_CFLAGS-instead-of-OPENMP_LIBS.patch,
-  +files/apbs-1.3/0011-apbs-1.3-shared-linking.patch,
-  +files/apbs-1.3/0012-apbs-1.3-python-linking-correction.patch,
-  +files/apbs-1.3/0013-apbs-1.3-tools-installation.patch,
-  +files/apbs-1.3/0014-apbs-1.3-pythonlib-fix.patch,
-  +files/apbs-1.3/0015-apbs-1.3-pythonlib-fix.patch:
-  Rewrite build, rely on pkg-config when possible, move to
-  autotools-utils.eclass, handle static-libs correctly
-
-  13 Dec 2011; Justin Lecher <jlec@gentoo.org> apbs-1.2.1b-r4.ebuild,
-  apbs-1.3.ebuild, apbs-1.3-r1.ebuild:
-  Block sci-libs/gts with USE=tools because of file collision on
-  /usr/bin/smooth, #387689
-
-  20 Jul 2011; Pacho Ramos <pacho@gentoo.org> metadata.xml:
-  Drop maintainer due retirement, bug #105599
-
-  07 Jul 2011; Justin Lecher <jlec@gentoo.org> apbs-1.3-r1.ebuild:
-  Fix for atlas detection as blas implementation
-
-  04 Jul 2011; Justin Lecher <jlec@gentoo.org> apbs-1.3-r1.ebuild,
-  +files/apbs-1.3-blas.patch:
-  Fix for blas detection
-
-  02 Jul 2011; Justin Lecher <jlec@gentoo.org> apbs-1.2.1b-r4.ebuild,
-  apbs-1.3.ebuild, apbs-1.3-r1.ebuild, metadata.xml:
-  Use pkg-config to detect mmdb and lapack libs
-
-  21 Jun 2011; Justin Lecher <jlec@gentoo.org> apbs-1.2.1b-r4.ebuild,
-  apbs-1.3.ebuild, apbs-1.3-r1.ebuild:
-  Add dependency on virtual/fortran
-
-  21 Jun 2011; Justin Lecher <jlec@gentoo.org> apbs-1.2.1b-r4.ebuild,
-  apbs-1.3.ebuild, apbs-1.3-r1.ebuild:
-  Added fortran-2.eclass support
-
-  16 Apr 2011; Justin Lecher <jlec@gentoo.org> apbs-1.3.ebuild,
-  apbs-1.3-r1.ebuild:
-  Moved to new meta ebuild sci-libs/fetk
-
-  16 Dec 2010; Justin Lecher <jlec@gentoo.org> apbs-1.2.1b-r4.ebuild,
-  apbs-1.3.ebuild, apbs-1.3-r1.ebuild:
-  Removal of fortran.eclass, #348851
-
-*apbs-1.3-r1 (04 Nov 2010)
-
-  04 Nov 2010; Justin Lecher <jlec@gentoo.org>
-  files/apbs-1.2.1b-multilib.patch, +apbs-1.3-r1.ebuild,
-  +files/apbs-1.3-python.patch, files/apbs-1.3-shared.patch,
-  +files/apbs-1.3-zlib.patch:
-  Fix compilation of python module, fix support for zlib
-
-  01 Nov 2010; Justin Lecher <jlec@gentoo.org> apbs-1.3.ebuild,
-  +files/apbs-1.3-mainroutines.patch, files/apbs-1.3-shared.patch,
-  metadata.xml:
-  Include support for FETK
-
-  31 Oct 2010; Justin Lecher <jlec@gentoo.org> apbs-1.3.ebuild:
-  Make einfo on parallel python and mpi support
-
-*apbs-1.3 (27 Oct 2010)
-
-  27 Oct 2010; Justin Lecher <jlec@gentoo.org> apbs-1.2.1b-r4.ebuild,
-  +apbs-1.3.ebuild, +files/apbs-1.3-contrib.patch,
-  +files/apbs-1.3-link.patch, +files/apbs-1.3-openmp.patch,
-  +files/apbs-1.3-shared.patch:
-  Version Bump, tinker support removed
-
-  09 Jul 2010; Justin Lecher <jlec@gentoo.org> metadata.xml:
-  Update metadata.xml
-
-
-  09 Jul 2010; Justin Lecher <jlec@gentoo.org> -apbs-1.0.0-r1.ebuild,
-  -files/apbs-1.0.0-LDFLAGS.patch, -files/apbs-1.0.0-install-fix.patch,
-  -files/apbs-1.0.0-libmaloc-noinstall.patch,
-  -files/apbs-1.0.0-openmpi.patch, -apbs-1.2.1b-r3.ebuild:
-  Cleaned old after stabilization
-
-  09 Jul 2010; Christian Faulhammer <fauli@gentoo.org>
-  apbs-1.2.1b-r4.ebuild:
-  stable x86, bug 324613
-
-  27 Jun 2010; Justin Lecher <jlec@gentoo.org> apbs-1.2.1b-r4.ebuild:
-  Force LC_NUMERIC to C during test, should fix problem with decimal
-  seperators
-
-  27 Jun 2010; <nixnut@gentoo.org> apbs-1.2.1b-r4.ebuild:
-  ppc stable #324613
-
-  26 Jun 2010; Christoph Mende <angelos@gentoo.org> apbs-1.2.1b-r4.ebuild:
-  Stable on amd64 wrt bug #324613
-
-  22 Jun 2010; Justin Lecher <jlec@gentoo.org> apbs-1.2.1b-r3.ebuild,
-  apbs-1.2.1b-r4.ebuild:
-  Fixed test suite
-
-  17 Jun 2010; Justin Bronder <jsbronder@gentoo.org> apbs-1.0.0-r1.ebuild,
-  apbs-1.2.1b-r3.ebuild, apbs-1.2.1b-r4.ebuild:
-  Remove lam-mpi handling, see #324415.
-
-*apbs-1.2.1b-r4 (15 Jun 2010)
-
-  15 Jun 2010; Kacper Kowalik <xarthisius@gentoo.org>
-  +apbs-1.2.1b-r4.ebuild, +files/apbs-1.2.1b-multilib.patch,
-  files/apbs-1.2.1b-openmp.patch, +files/apbs-1.2.1b-parallelbuild.patch,
-  +files/apbs-1.2.1b-shared.patch, metadata.xml:
-  Adding shared libs, fix parallel build, fix install paths on multilib
-
-  09 Jun 2010; Justin Lecher <jlec@gentoo.org> -apbs-1.2.0.ebuild,
-  -files/apbs-1.2.0-install-fix.patch, -apbs-1.2.1b.ebuild,
-  -apbs-1.2.1b-r1.ebuild:
-  removed old version which having problems with PYTHON ABIs stuff
-
-  12 May 2010; Justin Lecher (jlec) <jlec@j-schmitz.net>
-  apbs-1.2.1b-r3.ebuild:
-  Added missing fortran_pkg_setup
-
-*apbs-1.2.1b-r3 (26 Apr 2010)
-
-  26 Apr 2010; Justin Lecher <jlec@gentoo.org> -apbs-1.2.1b-r2.ebuild,
-  +apbs-1.2.1b-r3.ebuild:
-  Wrong usage of python_get_sitedir forces the rev bump
-
-  25 Apr 2010; Justin Lecher <jlec@gentoo.org> apbs-1.2.1b-r2.ebuild:
-  Python ABI fixes, #316165
-
-  30 Mar 2010; Justin Lecher <jlec@gentoo.org> apbs-1.2.1b-r2.ebuild,
-  metadata.xml:
-  Fix for USE="python -tool" situation, #311995
-
-*apbs-1.2.1b-r2 (28 Mar 2010)
-
-  28 Mar 2010; Justin Lecher (jlec) <jlec@gentoo.org>
-  +apbs-1.2.1b-r2.ebuild, +files/apbs-1.2.1b-install-fix.patch,
-  +files/apbs-1.2.1b-openmp.patch:
-  Configure fixes, removed unnecessary installed files. Make tools optional
-
-*apbs-1.2.1b-r1 (20 Feb 2010)
-
-  20 Feb 2010; Justin Lecher (jlec) <jlec@gentoo.org> apbs-1.2.1b.ebuild,
-  +apbs-1.2.1b-r1.ebuild:
-  Reverted last change into a new revision
-
-  18 Feb 2010; Justin Lecher (jlec) <jlec@gentoo.org> apbs-1.2.1b.ebuild:
-  EAPI=3, keyworded for {amd64,x86}-linux, made it EPREFIX aware
-
-*apbs-1.2.1b (04 Dec 2009)
-
-  04 Dec 2009; Markus Dittrich <markusle@gentoo.org> +apbs-1.2.1b.ebuild,
-  +files/apbs-1.2.1b-autoconf-2.64.patch:
-  Version bump and fixed compilation with autoconf 2.64 (fixes bug
-  #294453 and #295537).
-
-*apbs-1.2.0 (03 Nov 2009)
-
-  03 Nov 2009; Markus Dittrich <markusle@gentoo.org> -apbs-0.5.0.ebuild,
-  -apbs-0.5.1.ebuild, +apbs-1.2.0.ebuild, +files/apbs-1.2.0-contrib.patch,
-  +files/apbs-1.2.0-install-fix.patch, +files/apbs-1.2.0-link.patch,
-  -files/apbs-examples-gentoo.patch, -files/apbs-gcc4-gentoo.patch,
-  metadata.xml:
-  Version bump (fixes bug #262905) and removed old ebuilds. Currently 
-  missing is opal support (needs keywording by ppc) as well as fetk 
-  support. Thanks much to Justin Lecher for his ebuild.
-
-  06 May 2009; Markus Meier <maekke@gentoo.org> apbs-1.0.0-r1.ebuild:
-  amd64/x86 stable, bug #250903
-
-  05 Feb 2009; Jeremy Olexa <darkside@gentoo.org> apbs-0.5.0.ebuild,
-  apbs-0.5.1.ebuild, apbs-1.0.0-r1.ebuild:
-  (non maintainer commit) [QA] fix HOMEPAGE, bug 256488
-
-*apbs-1.0.0-r1 (11 Oct 2008)
-
-  11 Oct 2008; Markus Dittrich <markusle@gentoo.org>
-  +files/apbs-1.0.0-LDFLAGS.patch,
-  files/apbs-1.0.0-install-fix.patch, -apbs-1.0.0.ebuild,
-  +apbs-1.0.0-r1.ebuild:
-  Version bump to pull in updated patch fixing bad install location 
-  for docs (see bug #241316). Added patch for ignored LDFLAGS.
-
-*apbs-1.0.0 (29 Apr 2008)
-
-  29 Apr 2008; Markus Dittrich <markusle@gentoo.org>
-  +files/apbs-1.0.0-install-fix.patch,
-  +files/apbs-1.0.0-libmaloc-noinstall.patch,
-  +files/apbs-1.0.0-openmpi.patch, +apbs-1.0.0.ebuild:
-  Version bump (fixes bug #219599). Changed license to BSD since
-  it most closely matches the apbs license.
-
-  23 Mar 2008; Markus Dittrich <markusle@gentoo.org> apbs-0.5.1.ebuild:
-  Changed to unversioned install location in /usr/share (see bug #213616).
-
-  12 Jan 2008; Markus Dittrich <markusle@gentoo.org> apbs-0.5.1.ebuild:
-  Fixed improper link path for libapbsblas.a (fixes bug #205310).
-
-  31 Jul 2007; Jeff Gardner <je_fro@gentoo.org> -apbs-0.4.0.ebuild:
-  Removing unused version/files.
-
-  18 Jul 2007; Jeff Gardner <je_fro@gentoo.org> ChangeLog:
-  Add apbs-0.5.1 which includes many bugfixes and new features.
-
-  24 Feb 2007; Jeff Gardner <je_fro@gentoo.org> apbs-0.5.0.ebuild:
-  Cleanup apbs-0.5.0.ebuild.
-
-*apbs-0.5.0 (23 Feb 2007)
-
-  23 Feb 2007; Jeff Gardner <je_fro@gentoo.org> +apbs-0.5.0.ebuild:
-  Add apbs-0.5.0 with Big Thanks(tm) to Stephen Floor.
-
-  06 Jan 2007; Danny van Dyk <kugelfang@gentoo.org> -apbs-0.3.2.ebuild:
-  QA: Removed unused versions.
-
-  12 Oct 2006; Jeff Gardner <je_fro@gentoo.org>; apbs-0.4.0.ebuild:
-  Keyword ~amd64
-
-  20 Sep 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
-  (#148281) Change herd to sci-chemistry from sci.
-
-  16 Sep 2006; Donnie Berkholz <dberkholz@gentoo.org>; apbs-0.4.0.ebuild:
-  Keyword ~ppc.
-
-  07 Jul 2006; Donnie Berkholz <spyderous@gentoo.org>; ChangeLog:
-  Update to my new email address.
-
-  31 May 2006; Donnie Berkholz <dberkholz@gentoo.org>; apbs-0.4.0.ebuild:
-  Fix crackrock SRC_URI, reported by Brian Harring.
-
-  23 May 2006; Markus Dittrich <markusle@gentoo.org>
-  +files/apbs-gcc4-gentoo.patch, apbs-0.4.0.ebuild:
-  Added patch to enable compilation with gcc-4.1.
-
-  27 Apr 2006; Alec Warner <antarus@gentoo.org> files/digest-apbs-0.3.2,
-  Manifest:
-  Fixing SHA256 digest, pass four
-
-*apbs-0.4.0 (08 Mar 2006)
-
-  08 Mar 2006; Markus Dittrich <markusle@gentoo.org> +apbs-0.4.0.ebuild, +apbs-examples-gentoo.patch:
-  Version bump. Thanks to je_fro <je_fro@yahoo.com> for the ebuild
-  (see bug #124793).
-
-  13 Dec 2005; Markus Dittrich <markusle@gentoo.org> metadata.xml:
-  marked apbs-0.3.2.ebuild as ~x86
-
-*apbs-0.3.2 (20 Oct 2005)
-
-  20 Oct 2005; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
-  +apbs-0.3.2.ebuild:
-  Initial import. Thanks to Markus Dittrich <markusle@gmail.com> for his work.
+  25 Apr 2012; Justin Lecher <jlec@gentoo.org> apbs-1.3-r2.ebuild:
+  Don't runtime libtoolize two times
 
diff --git a/sci-chemistry/apbs/Manifest b/sci-chemistry/apbs/Manifest
index cd698d6b010c..87c56fa79cd6 100644
--- a/sci-chemistry/apbs/Manifest
+++ b/sci-chemistry/apbs/Manifest
@@ -36,14 +36,14 @@ DIST apbs-1.2.1b-source.tar.gz 40647966 RMD160 4ba1f72a7f9adcf7b283dc18743488143
 DIST apbs-1.3-source.tar.gz 48625351 RMD160 c075a747dc28f382f3a383a0944a1b20e0c8a9f1 SHA1 1494f36e35f2e4b1a18d4b22516fad4948c6391f SHA256 5fa5b597f7d5a3d9bb55429ec4fefc69e7d0f918d568c3c4a288088c0fde9ef2
 EBUILD apbs-1.2.1b-r4.ebuild 3605 RMD160 9cc3a6e31fef129da866bf90f6a6eeb97710a111 SHA1 c8df66903bcaf4e2cd39715112b9b83280513820 SHA256 38dc067d4a8efd351a15d292b3d00424e3782871e1ff8caada78a8ab2772bfac
 EBUILD apbs-1.3-r1.ebuild 4570 RMD160 72340af109b8a98a8dd671ad5200035b51e35f9d SHA1 d81ae8aa7ea38f6b5294feba3e3df3f79933ac0d SHA256 edd4ad503de5850c4b6d1ad9ca1b11c947c7bbb1cbc990a50f9b2286ec39e39b
-EBUILD apbs-1.3-r2.ebuild 4134 RMD160 4e359cc0b83fef0a1a19ecfa1d85c8b28d3c7ed0 SHA1 aa5b58f3e29c0884fdc031972c71aebbb1ecef72 SHA256 71fdadc08b5851ce99feab691586fc28b1ab32a1b2dcc1f6a72fe9772ad1bd04
+EBUILD apbs-1.3-r2.ebuild 4155 RMD160 c74b7c8a41960e652ea81be4481bac7714773311 SHA1 e59488f3d5c893849b0a81907d88d027688c89f7 SHA256 e3ea13094de98b0ac7f485cadc987cb204d30a8da71ee7c64221d6fef787367b
 EBUILD apbs-1.3.ebuild 4358 RMD160 c3897181791ca3715ed77f30031af6a811f2beac SHA1 17c656a149e83de4a8158145ded80423f4fe5d3a SHA256 d3683ca49b49838368d70658a0e28b30f6a172de1709983d11a33bd1dc042cde
-MISC ChangeLog 10150 RMD160 6cfc0c38d45e0424881e0f64aa463a0699844ea4 SHA1 c4dd23f6c8c14da4ab9e46118c13d9a225fe02c6 SHA256 19e2dffc22eeac6a0bbc9a149bdf0f4a425f271b29771298d4a785d12e47734f
+MISC ChangeLog 313 RMD160 6022fe10dc3e89a338fa33c39de7425358d2b60e SHA1 33f798326c41a4da10e8266e6b00d300226d6d0d SHA256 689ce6cb794cbb4c8b86c078b6b836bac96ce9b787441ea74ca94c21c2c9dca3
 MISC metadata.xml 871 RMD160 e50499e926ad62fc924b5c48f6d6fd56519c7cf7 SHA1 fe5335ee3c033f9f0b336663c4065ba4af3f9c8b SHA256 510d88fd555af07b55320109b1a56718980f6eb9e3569f9c39d88c82268cf56f
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+Version: GnuPG v2.0.19 (GNU/Linux)
 
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diff --git a/sci-chemistry/apbs/apbs-1.3-r2.ebuild b/sci-chemistry/apbs/apbs-1.3-r2.ebuild
index 92b7629e343e..69674ff391a6 100644
--- a/sci-chemistry/apbs/apbs-1.3-r2.ebuild
+++ b/sci-chemistry/apbs/apbs-1.3-r2.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2012 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/apbs-1.3-r2.ebuild,v 1.2 2012/01/05 18:51:13 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/apbs-1.3-r2.ebuild,v 1.3 2012/04/25 16:09:31 jlec Exp $
 
 EAPI=4
 
@@ -72,7 +72,7 @@ src_prepare() {
 	sed \
 		-e 's:noinst_PROGRAMS:bin_PROGRAMS:g' \
 		-i tools/*/Makefile.am || die
-	eautoreconf
+	AT_NOELIBTOOLIZE=yes eautoreconf
 }
 
 src_configure() {