New addition

Package-Manager: portage-2.2_rc67/cvs/Linux x86_64

4 files changed, 83 insertions, 0 deletions

diff --git a/sci-chemistry/suitename/ChangeLog b/sci-chemistry/suitename/ChangeLog
new file mode 100644
index 000000000000..c54690c7d9c4
--- /dev/null
+++ b/sci-chemistry/suitename/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-chemistry/suitename
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/suitename/ChangeLog,v 1.1 2010/07/14 20:15:22 jlec Exp $
+
+*suitename-0.3.070628 (14 Jul 2010)
+
+  14 Jul 2010; Justin Lecher <jlec@gentoo.org> +suitename-0.3.070628.ebuild,
+  +metadata.xml:
+  New addition
+
diff --git a/sci-chemistry/suitename/Manifest b/sci-chemistry/suitename/Manifest
new file mode 100644
index 000000000000..e22d70ad6f58
--- /dev/null
+++ b/sci-chemistry/suitename/Manifest
@@ -0,0 +1,14 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+DIST suitename.0.3.070628.src.tgz 29914 RMD160 9f2092e4aa60639094856725b6fae44012ce0417 SHA1 b105be380a80347054ae837de9aad3081e21b637 SHA256 5c2a709aa2d815b259475344aa2b982c157868eb9a7e5d6407b8f525f7e28c4c
+EBUILD suitename-0.3.070628.ebuild 922 RMD160 a9a503fb6262fe2fe5d2c3c9af651decd491b3a6 SHA1 7fe3d30efeff0d1f783b8e3338e60117c51d964f SHA256 320fe2c60a385f1362a71aa515d267846d3e68e3a74e0c057eafb90258cc192b
+MISC ChangeLog 364 RMD160 3c9f5cccd746b312e5377e4d0ae4d39699a05eff SHA1 48ac90d77d6e7ac8823533778f7ae9d61f32bb9d SHA256 1555d6a7ad2a5c9284deb0876d8afc951df9f28539c440b4498a223184a553df
+MISC metadata.xml 1078 RMD160 01cc3298fe4561aadf731c500f5cc8d0a04ca102 SHA1 85dc5b821e08d355972f4f46c3550e061afe4314 SHA256 4a50e36ef1907196334cbe9cea39924e9678977c17bbe87230488f78f6979908
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.15 (GNU/Linux)
+
+iEYEARECAAYFAkw+GuAACgkQgAnW8HDreRb0fwCgzJrFMe7TqHnRwN/chYFU8YFP
+RLAAoIym90B8fx6TzSezilYtjNT6CCVi
+=YSoz
+-----END PGP SIGNATURE-----
diff --git a/sci-chemistry/suitename/metadata.xml b/sci-chemistry/suitename/metadata.xml
new file mode 100644
index 000000000000..37e91c3ef75f
--- /dev/null
+++ b/sci-chemistry/suitename/metadata.xml
@@ -0,0 +1,22 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci-chemistry</herd>
+<maintainer>
+  <email>jlec@gentoo.org</email>
+</maintainer>
+<longdescription>
+Suitename is a new C program that supports the ROC RNA Ontology Consortium 
+consensus RNA backbone nomenclature and conformer-list development (see our RNA 
+backbone rotamer section.
+From dihedral-angle input for a specific RNA structure (usually from Dangle), 
+Suitename categorizes the RNA backbone geometry of each suite (the 
+sugar-to-sugar version of a residue) either as an outlier ("!!") or as belonging
+to one of the 53 defined conformer bins. The output is either a 
+one-line-per-suite report, or a linear conformer string (as shown below the 
+image here) in one of several variant formats. Suitename is built into 
+MolProbity, producing entries in the multi-criterion chart for an RNA model and 
+also a suitestring file. The Suitename code is made available here for bulk or 
+individual command-line use.
+</longdescription>
+</pkgmetadata>
diff --git a/sci-chemistry/suitename/suitename-0.3.070628.ebuild b/sci-chemistry/suitename/suitename-0.3.070628.ebuild
new file mode 100644
index 000000000000..21ceea4a7006
--- /dev/null
+++ b/sci-chemistry/suitename/suitename-0.3.070628.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/suitename/suitename-0.3.070628.ebuild,v 1.1 2010/07/14 20:15:22 jlec Exp $
+
+EAPI="3"
+
+inherit toolchain-funcs
+
+MY_P="${PN}.${PV}"
+
+DESCRIPTION="Program that supports the ROC RNA Ontology Consortium consensus RNA backbone nomenclature and conformer-list development"
+HOMEPAGE="http://kinemage.biochem.duke.edu/software/suitename.php"
+SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+LICENSE="richardson"
+IUSE=""
+
+S="${WORKDIR}"/${MY_P}
+
+src_prepare() {
+	tc-export CC
+	cp Makefile.linux Makefile || die
+	sed \
+		-e "s:-o:${LDFLAGS} -o:g" \
+		-e 's:cc:${CC}:g' \
+		-i Makefile || die
+}
+
+src_compile() {
+	emake CFLAGS="${CFLAGS}" || die
+}
+
+src_install() {
+	dobin ${PN} || die
+}