diff options
| author |   Justin Lecher <jlec@gentoo.org> | 2010-07-19 06:43:59 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2010-07-19 06:43:59 +0000 |
| commit | 777a2dea36642de2a7e6772d198b2716443f2deb (patch) | |
| tree | 65eccb9f48e22f9e11dda53935c40a3e387462d0 /sci-chemistry | |
| parent | stable x86, bug 326091 (diff) | |
| download | historical-777a2dea36642de2a7e6772d198b2716443f2deb.tar.gz historical-777a2dea36642de2a7e6772d198b2716443f2deb.tar.bz2 historical-777a2dea36642de2a7e6772d198b2716443f2deb.zip | |
New addition
Package-Manager: portage-2.2_rc67/cvs/Linux x86_64
Diffstat (limited to 'sci-chemistry')
| -rw-r--r-- | sci-chemistry/clashlist/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-chemistry/clashlist/Manifest | 14 | ||||
| -rw-r--r-- | sci-chemistry/clashlist/clashlist-3.17.ebuild | 23 | ||||
| -rw-r--r-- | sci-chemistry/clashlist/metadata.xml | 16 |
4 files changed, 63 insertions, 0 deletions
diff --git a/sci-chemistry/clashlist/ChangeLog b/sci-chemistry/clashlist/ChangeLog new file mode 100644 index 000000000000..0401d09f89a5 --- /dev/null +++ b/sci-chemistry/clashlist/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-chemistry/clashlist +# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/clashlist/ChangeLog,v 1.1 2010/07/19 06:43:59 jlec Exp $ + +*clashlist-3.17 (19 Jul 2010) + + 19 Jul 2010; Justin Lecher <jlec@gentoo.org> +clashlist-3.17.ebuild, + +metadata.xml: + New addition + diff --git a/sci-chemistry/clashlist/Manifest b/sci-chemistry/clashlist/Manifest new file mode 100644 index 000000000000..af845b9e90e7 --- /dev/null +++ b/sci-chemistry/clashlist/Manifest @@ -0,0 +1,14 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + +DIST molprobity-3.17.tgz 26429898 RMD160 2bbd6d9c989692849dc56238cc9666742e2e3e1f SHA1 9205a37454ab690a62496e262c4cfc68c924e9a8 SHA256 2e70814efb4f566a522762a626f69669c09285cbb6fc26444eb947fde9b30f25 +EBUILD clashlist-3.17.ebuild 642 RMD160 0a0a4580e29b2fe4d1e645e284ea3c247c2d06db SHA1 a10f2d4d28295be628809c9bd48d5d0c95937909 SHA256 47005c5bbc15aa8e09ce0d33f57da3d00a7b5577483cbb3ba6dc0fdaa7325b66 +MISC ChangeLog 352 RMD160 f85c307ce1cd62d66f2effed8b967878b8c8207e SHA1 9e5d938c6f61e0892d84babfe4a910043b789982 SHA256 13718506c1064a013959cb7c6200261e79c79670369d68526c4f3c7ac5139e2c +MISC metadata.xml 680 RMD160 5574cd39abdc95da1c31bddba6c81f94bfa01ea0 SHA1 6f72238db2762a63c7796ea2efddbe63e9b4b439 SHA256 2dc2e68808d880675861d96c0240b318cae3d65e97e2b49c5500670b38daf1da +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v2.0.15 (GNU/Linux) + +iEYEARECAAYFAkxD9DYACgkQgAnW8HDreRZsJACfT2oosEX0XrQWOw+0xAxVFJXE +YZYAnijJdHSsYxzHjxHf9AmicT64o1KV +=qeKd +-----END PGP SIGNATURE----- diff --git a/sci-chemistry/clashlist/clashlist-3.17.ebuild b/sci-chemistry/clashlist/clashlist-3.17.ebuild new file mode 100644 index 000000000000..bab469623b8e --- /dev/null +++ b/sci-chemistry/clashlist/clashlist-3.17.ebuild @@ -0,0 +1,23 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/clashlist/clashlist-3.17.ebuild,v 1.1 2010/07/19 06:43:59 jlec Exp $ + +# inherit + +DESCRIPTION="Build lists of van der Waals clashes from an input PDB file" +HOMEPAGE="http://kinemage.biochem.duke.edu/software/index.php" +SRC_URI="mirror://gentoo/molprobity-${PV}.tgz" + +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +LICENSE="richardson" +IUSE="" + +RDEPEND=" + sci-chemistry/cluster + sci-chemistry/probe" +DEPEND="${RDEPEND}" + +src_install() { + dobin molprobity3/bin/clashlist || die +} diff --git a/sci-chemistry/clashlist/metadata.xml b/sci-chemistry/clashlist/metadata.xml new file mode 100644 index 000000000000..d02b9eb95dce --- /dev/null +++ b/sci-chemistry/clashlist/metadata.xml @@ -0,0 +1,16 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-chemistry</herd> +<maintainer> + <email>jlec@gentoo.org</email> +</maintainer> +<longdescription> +Clashlist is a simple UNIX script which uses the awk facility along with +the programs Probe and Cluster to build lists of van der Waals clashes +from an input PDB-format molecular data file (with H atoms). These lists +are organized such that collections of interacting residues are grouped +together, sorted by the worst clash. For the purposes of this analysis, +a clash is defined as a van der Waals overlap >= 0.4 A. +</longdescription> +</pkgmetadata> |