nmrpipe gone

5 files changed, 0 insertions, 257 deletions

diff --git a/sci-chemistry/nmrpipe/ChangeLog b/sci-chemistry/nmrpipe/ChangeLog
deleted file mode 100644
index 876beaf733a1..000000000000
--- a/sci-chemistry/nmrpipe/ChangeLog
+++ /dev/null
@@ -1,81 +0,0 @@
-# ChangeLog for sci-chemistry/nmrpipe
-# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/nmrpipe/ChangeLog,v 1.15 2008/06/03 14:28:44 je_fro Exp $
-
-*nmrpipe-9.27.2007.222.14.56 (03 Jun 2008)
-
-  03 Jun 2008; Jeff Gardner <je_fro@gentoo.org>
-  -nmrpipe-2.5.2006.184.15.37.ebuild, +nmrpipe-9.27.2007.222.14.56.ebuild:
-  New version, removed old as it's no longer available. Thanks to toto.
-
-  28 Nov 2007; Jeff Gardner <je_fro@gentoo.org>
-  nmrpipe-2.5.2006.184.15.37.ebuild:
-  Fixing manifest and adding sed call as suggested by justin in bug 200389.
-
-  22 Jul 2007; Donnie Berkholz <dberkholz@gentoo.org>;
-  nmrpipe-2.5.2006.184.15.37.ebuild:
-  Drop virtual/x11 references.
-
-  18 Jul 2007; Jeff Gardner <je_fro@gentoo.org> metadata.xml:
-  Add myself as maintainer in metadata.xml
-
-  17 Jul 2007; Jeff Gardner <je_fro@gentoo.org>
-  files/digest-nmrpipe-2.5.2006.184.15.37, ChangeLog, Manifest:
-  Updating Manifest with latest nmrpipe files.
-
-*nmrpipe-2.5.2006.184.15.37 (18 Oct 2006)
-
-  18 Oct 2006; Olivier Fisette <ribosome@gentoo.org>
-  -nmrpipe-2.3.2005.167.14.44.ebuild, +nmrpipe-2.5.2006.184.15.37.ebuild:
-  New upstream version (fixes bug #151627, thanks to Stephen Floor
-  <snf@extrospective.net> for reporting.) Removing old version to avoid digest
-  mismatches.
-
-  20 Sep 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
-  (#148281) Change herd to sci-chemistry from sci.
-
-  05 Feb 2006; Olivier Fisette <ribosome@gentoo.org>
-  nmrpipe-2.3.2005.167.14.44.ebuild:
-  Ported to modular X.
-
-  30 Jan 2006; Robin H. Johnson <robbat2@gentoo.org> Manifest:
-  Manifest fix.
-
-  29 Jan 2006; Marcus D. Hanwell <cryos@gentoo.org>
-  nmrpipe-2.3.2005.167.14.44.ebuild:
-  Dependency update: media-gfx/gnuplot -> sci-visualization/gnuplot.
-
-*nmrpipe-2.3.2005.167.14.44 (18 Oct 2005)
-
-  18 Oct 2005; Olivier Fisette <ribosome@gentoo.org>
-  -files/nmrpipe-20050616-env, +files/env-nmrpipe,
-  +nmrpipe-2.3.2005.167.14.44.ebuild, -nmrpipe-20050616-r1.ebuild:
-  New version. Removing obsolete version.
-
-*nmrpipe-20050616-r1 (31 Aug 2005)
-
-  31 Aug 2005; Olivier Fisette <ribosome@gentoo.org>
-  -nmrpipe-20050616.ebuild, +nmrpipe-20050616-r1.ebuild:
-  Ebuild clean-up. Removed useless installation log files.
-
-*nmrpipe-20050616 (22 Jul 2005)
-
-  22 Jul 2005; Olivier Fisette <ribosome@gentoo.org>
-  files/nmrpipe-20050415-env, -nmrpipe-20050415-r1.ebuild,
-  +nmrpipe-20050616.ebuild:
-  New version. Removing the older version since the archives are no longer
-  available.
-
-*nmrpipe-20050415-r1 (20 Jul 2005)
-
-  20 Jul 2005; Olivier Fisette <ribosome@gentoo.org>
-  files/nmrpipe-20050415-env, -nmrpipe-20050415.ebuild,
-  +nmrpipe-20050415-r1.ebuild:
-  Fixed a few potential problems, including bug #99685. Thanks to Katia
-  Lecours <klecours@rsvs.ulaval.ca> for reporting.
-
-*nmrpipe-20050415 (24 May 2005)
-
-  24 May 2005; Olivier Fisette <ribosome@gentoo.org>
-  +files/nmrpipe-20050415-env, +metadata.xml, +nmrpipe-20050415.ebuild:
-  Initial import.
diff --git a/sci-chemistry/nmrpipe/Manifest b/sci-chemistry/nmrpipe/Manifest
deleted file mode 100644
index cd9a2a2e760c..000000000000
--- a/sci-chemistry/nmrpipe/Manifest
+++ /dev/null
@@ -1,12 +0,0 @@
-AUX env-nmrpipe 499 RMD160 11ab9f42b03700caedfe344186c47fd4a6409758 SHA1 8431685d268b14d88dd31cb494f0d333fff225b9 SHA256 f16820dd88ae38c8db6ffed19a97aade62f0de4c3de692b7a2c3b89897d894e2
-DIST acme.tar.Z 11681951 RMD160 fdcf35fab1b63ddda55288b1b2ed0f82c8299bef SHA1 5093f92a4d7e4173bc056b6b1922a6da8e6bbf0c SHA256 5713452a1461e636f0de48e5ce3476fc0ae60b3f78a0288744f45e455f3445d9
-DIST binval.com 3374 RMD160 8ed338cc415c483081cf2021724402af296ab5e9 SHA1 7246ab6cd2b8feaa917c563bdbe93aef47b04a22 SHA256 8140386fe3c0ec4658ed228f33c4306429f5d0aa55135e77348a7dca782baf6e
-DIST dyn.tar.Z 46449682 RMD160 75b6497431561b82127685a567d1a57201a207ae SHA1 a6642f82f1e7130aafb718763b262715abed2e4a SHA256 abfafb53be559a5d0983849a66ec9be0140d591a7fc4008018b0942058128fa6
-DIST install.com 24500 RMD160 95b2bf620786bec3a4ea452935df7a4dbe3582b9 SHA1 1e4201beab43306f92300d03c9a45ddd5eca8d0b SHA256 06102617ded486ee1236d34c2ede16f6ee482d146c83a0c1be53fc5a1fa8a5f7
-DIST mfr.tar.Z 1014585 RMD160 285bcc0acd67e8e4e86eceffda63731c61239c93 SHA1 5e8b15337a22eccd803ee657a5447075553012b1 SHA256 28fed5bb6a01719d98e139685c5961834877fb4e61c107673cfa21914f62891b
-DIST nmrpipe.linux9.tar.Z 43760321 RMD160 d02f6c11dc6340716cb8e43d7bdca4b327a1b4ae SHA1 301637f1318402e774f6d636e5b1cc295c86463e SHA256 596c989ad193cf4fe7a2af4c414dd014d225c19014f71096f987d2c54e93bae2
-DIST pdbH.tar.Z 88196505 RMD160 d1ac67f57f6d2bd3d9c07bd5b5362ffaa15b0d72 SHA1 519544ccacc8d369caa42c7510f5fd44f5e39722 SHA256 1960b2e544c3744ec83e49f927589e15adf8af480947ae3b4d2ece495a00e92a
-DIST valpha.tar 490800640 RMD160 da5779f72680ccc8b88bde8c485db26665970423 SHA1 5583e3c435496251750b464a737755c1f8d055cd SHA256 6072ac73245404d5810bef9300d76328585fcfb4bce9d517815624bcc0a9634c
-EBUILD nmrpipe-9.27.2007.222.14.56.ebuild 4617 RMD160 839db6f075f4151a02677245f294138219ff331d SHA1 94d79330c96344cc5834a89487cc2fc0dc7457ef SHA256 118ee03bd0ffaea2efcc9ce02fc1533e1363f4155e72236063076b572493513d
-MISC ChangeLog 3014 RMD160 b7bf67c51de5a32651bf5eac1c16c90eb8560dfd SHA1 d522a87b1022c8a863c8a982987c83d46cf71a63 SHA256 d2b7f14d2bc6d0527b4655eed773c8534b634015575d42bbba0f9d6dcc7cee2f
-MISC metadata.xml 262 RMD160 4bc9fb00be2d7ee1e0daebfd55d4758355aa5edd SHA1 dd106e7f04d9edd5e2f0cb49fac3f8e162099b47 SHA256 097369e3361a1a1c762c8b61f50184628b13ebbca523c239da95a3d20895c38d
diff --git a/sci-chemistry/nmrpipe/files/env-nmrpipe b/sci-chemistry/nmrpipe/files/env-nmrpipe
deleted file mode 100644
index beb9d707eb4f..000000000000
--- a/sci-chemistry/nmrpipe/files/env-nmrpipe
+++ /dev/null
@@ -1,23 +0,0 @@
-# Platform
-BINTYPE="linux9"
-
-# NMRPipe
-NMRBASE="/opt/nmrpipe"
-NMRTXT="${NMRBASE}/nmrtxt"
-MANPATH="${NMRBASE}/man"
-PATH="${NMRBASE}/bin"
-# Auxiliary NMRPipe scripts
-# PATH="${PATH}:${NMRBASE}/com"
-
-# Dynamo
-DYNAMO_DIR="${NMRBASE}/dynamo"
-DYNAMO_PARAMS="${DYNAMO_DIR}/params"
-SURF_DIR="${DYNAMO_DIR}/surface"
-PATH="${PATH}:${DYNAMO_DIR}/tcl"
-DYNAMO_KEY="2002084"
-
-# PDBH
-PDBH_BASE="${NMRBASE}/pdb"
-PDBH_DIR="${PDBH_BASE}/pdbH"
-PDBH_LIST="${PDBH_BASE}/pdbH.list"
-PDBH_TAB="${PDBH_BASE}/resolution.tab"
diff --git a/sci-chemistry/nmrpipe/metadata.xml b/sci-chemistry/nmrpipe/metadata.xml
deleted file mode 100644
index e20551819a33..000000000000
--- a/sci-chemistry/nmrpipe/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer>
-		<email>je_fro@gentoo.org</email>
-		<name>Jeffrey Gardner</name>
-	</maintainer>
-	<herd>sci-chemistry</herd>
-</pkgmetadata>
diff --git a/sci-chemistry/nmrpipe/nmrpipe-9.27.2007.222.14.56.ebuild b/sci-chemistry/nmrpipe/nmrpipe-9.27.2007.222.14.56.ebuild
deleted file mode 100644
index 29c5d944187e..000000000000
--- a/sci-chemistry/nmrpipe/nmrpipe-9.27.2007.222.14.56.ebuild
+++ /dev/null
@@ -1,132 +0,0 @@
-# Copyright 1999-2008 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/nmrpipe/nmrpipe-9.27.2007.222.14.56.ebuild,v 1.1 2008/06/03 14:28:44 je_fro Exp $
-
-DESCRIPTION="Spectral visualisation, analysis and Fourier processing"
-# The specific terms of this license are printed automatically on startup
-# by some NMRPipe applications. The user also has to accept them before
-# downloading the package.
-LICENSE="as-is"
-HOMEPAGE="http://spin.niddk.nih.gov/bax/software/NMRPipe/"
-# The NMRPipe installation script which we are not allowed to modify
-# requires all the following to be present for a complete installation.
-# Many of the bundled applications and libraries are afterwards deleted
-# (by this ebuild). The Gentoo provided applications and libraries are
-# used instead. The notable exception is the Tcl/Tk libraries; NMRPipe
-# requires a modified version of these. Unfortunately, this requires to
-# redefine the location of the libraries, which is done by sourcing an
-# initialisation script. NMRPipe users are used to this, and this ebuild
-# also prints a notice to this effect.
-SRC_URI="${PN}.linux9.tar.Z
-	dyn.tar.Z
-	mfr.tar.Z
-	pdbH.tar.Z
-	valpha.tar
-	acme.tar.Z
-	binval.com
-	install.com"
-
-SLOT="0"
-IUSE=""
-# Right now, precompiled executables are only available for Linux on the
-# x86 architecture. The maintainer chose to keep the sources closed, but
-# says he will gladly provide precompiled executables for other platforms
-# if there are such requests.
-KEYWORDS="-* ~x86"
-
-# The maintainer absolutely wants to control redistribution.
-RESTRICT="fetch"
-
-DEPEND="app-shells/tcsh"
-
-RDEPEND="${DEPEND}
-	dev-lang/tcl
-	dev-lang/tk
-	dev-tcltk/blt
-	sys-libs/libtermcap-compat
-	sys-libs/ncurses
-	x11-libs/xview
-	x11-libs/libX11"
-
-S="${WORKDIR}"
-NMRBASE="/opt/${PN}"
-
-pkg_nofetch() {
-	einfo "Please visit:"
-	einfo "\t${HOMEPAGE}"
-	einfo
-	einfo "Contact the package maintainer, then download the following files:"
-	for i in ${A}; do
-		einfo "\t${i}"
-	done
-	einfo
-	einfo "Place the downloaded files in your distfiles directory:"
-	einfo "\t${DISTDIR}"
-	echo
-}
-
-src_unpack() {
-	# The installation script will unpack the package. We just provide symlinks
-	# to the archive files, ...
-	for i in ${PN}.linux9.tar.Z dyn.tar.Z mfr.tar.Z \
-			pdbH.tar.Z valpha.tar acme.tar.Z; do
-		ln -s "${DISTDIR}"/${i} ${i}
-	done
-	# ... copy the installation scripts ...
-	cp "${DISTDIR}"/{binval.com,install.com} .
-	# ... and make the installation scripts executable.
-	chmod +x binval.com install.com
-}
-
-src_compile() {
-	# Unset DISPLAY to avoid the interactive graphical test.
-	DISPLAY="" ./install.com "${S}" || die
-	# Remove the symlinks for the archives and the installation scripts.
-	for i in ${A}; do
-		rm ${i} || die "Failed to remove archive symlinks."
-	done
-	# Remove some of the bundled applications and libraries; they are
-	# provided by Gentoo instead.
-	rm -r nmrbin.linux9/{0.0,lib,*timestamp,xv,gnuplot*,rasmol*} \
-		|| die "Failed to remove unnecessary libraries."
-	# Remove the initialisation script generated during the installation.
-	# It contains incorrect hardcoded paths; only the "nmrInit.com" script
-	# should be used.
-	rm com/nmrInit.linux9.com || die "Failed to remove broken init script."
-	# Make the precompiled Linux binaries executable.
-	chmod +x nmrbin.linux9/* || die "Failed to make programs executable."
-	# Set the correct path to NMRPipe in the auxiliary scripts.
-	cd com
-	for i in *; do
-		sed -e "s%/u/delaglio%${NMRBASE}%" -i ${i} || die \
-			"Failed patching scripts."
-	done
-	sed -i 's/\/var\/tmp\/portage\/sci-chemistry\/nmrpipe-2.5.2006.184.15.37\/work\//\/opt\/nmrpipe\//' font.com
-	# Remove installation log files.
-	cd "${S}"
-	rm *.log || die "Failed to remove installation log."
-}
-
-src_install() {
-	newenvd "${FILESDIR}"/env-${PN} 40${PN} || die "Failed to install env file."
-	insinto ${NMRBASE}
-	insopts -m0755
-	doins -r * || die "Failed to install application."
-	dosym ${NMRBASE}/nmrbin.linux9 ${NMRBASE}/bin || die \
-		"Failed to symlink binaries."
-}
-
-pkg_postinst() {
-	echo
-	ewarn "Before using NMRPipe applications, users must source the following"
-	ewarn "csh script, which will set the necessary environment variables:"
-	ewarn "\t${NMRBASE}/com/nmrInit.com"
-	ewarn
-	ewarn "Be aware that this script redefines the locations of the Tcl"
-	ewarn "libraries. This could break other non-NMRPipe Tcl applications"
-	ewarn "run in the same session."
-	ewarn
-	ewarn "Using Dynamo does not require running an additional initialisation"
-	ewarn "script. The necessary environment variables should already be set."
-	echo
-}