diff options
author | Marcus D. Hanwell <cryos@gentoo.org> | 2009-08-01 21:27:55 +0000 |
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committer | Marcus D. Hanwell <cryos@gentoo.org> | 2009-08-01 21:27:55 +0000 |
commit | 46e9f54ef0ebbe54a52cfd4ac2a03a402ccb2c0f (patch) | |
tree | 29c71157ab9a94a7c4828b3b53ccfc7211717acd /sci-chemistry | |
parent | Use xfconf.eclass. (diff) | |
download | historical-46e9f54ef0ebbe54a52cfd4ac2a03a402ccb2c0f.tar.gz historical-46e9f54ef0ebbe54a52cfd4ac2a03a402ccb2c0f.tar.bz2 historical-46e9f54ef0ebbe54a52cfd4ac2a03a402ccb2c0f.zip |
Removed old versions that are no longer required.
Package-Manager: portage-2.2_rc33/cvs/Linux x86_64
Diffstat (limited to 'sci-chemistry')
-rw-r--r-- | sci-chemistry/openbabel/ChangeLog | 8 | ||||
-rw-r--r-- | sci-chemistry/openbabel/Manifest | 8 | ||||
-rw-r--r-- | sci-chemistry/openbabel/files/openbabel-2.2.0_beta4-obconversion_api_fix.diff | 110 | ||||
-rw-r--r-- | sci-chemistry/openbabel/openbabel-2.1.1.ebuild | 20 | ||||
-rw-r--r-- | sci-chemistry/openbabel/openbabel-2.2.0.ebuild | 28 | ||||
-rw-r--r-- | sci-chemistry/openbabel/openbabel-2.2.2.ebuild | 59 |
6 files changed, 8 insertions, 225 deletions
diff --git a/sci-chemistry/openbabel/ChangeLog b/sci-chemistry/openbabel/ChangeLog index 37791b49f830..de58167ae250 100644 --- a/sci-chemistry/openbabel/ChangeLog +++ b/sci-chemistry/openbabel/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-chemistry/openbabel # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel/ChangeLog,v 1.28 2009/08/01 15:22:51 cryos Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel/ChangeLog,v 1.29 2009/08/01 21:27:55 cryos Exp $ + + 01 Aug 2009; Marcus D. Hanwell <cryos@gentoo.org> -openbabel-2.1.1.ebuild, + -openbabel-2.2.0.ebuild, + -files/openbabel-2.2.0_beta4-obconversion_api_fix.diff, + -openbabel-2.2.2.ebuild: + Removed old versions that are no longer required. *openbabel-2.2.3 (01 Aug 2009) diff --git a/sci-chemistry/openbabel/Manifest b/sci-chemistry/openbabel/Manifest index 591de9c4ae26..03e6b8a83801 100644 --- a/sci-chemistry/openbabel/Manifest +++ b/sci-chemistry/openbabel/Manifest @@ -1,17 +1,11 @@ AUX openbabel-2.2.0-doxyfile.patch 1074 RMD160 26a22e205fde6c778ed19e961e676d99f0ffa2a7 SHA1 89c68eab7c2f144bf664f1c8abb7322430893658 SHA256 28d8b3e4730bdd347ddb1a0bff238bf52b2eb591d23d693812d99bb02c7190ec -AUX openbabel-2.2.0_beta4-obconversion_api_fix.diff 3729 RMD160 56b58a8eeabad1f24f35056f339533ba22372941 SHA1 6a3741bbe8517687c9da6017a427868ac5cbc4aa SHA256 790ff6821debb8958bbb89fcd2ff5015207c91a5568ac4a19aba37a39ada64c7 DIST openbabel-2.0.2.tar.gz 2712813 RMD160 3fee81f9d7c1605b36fa22d0676bfb9c18500443 SHA1 48ae2579c55d57d1a357825f498fc4091b6b30b4 SHA256 f85e600fad398df63290690e0e8d62e02d37ead941bc0d5bc8de5e44a01c7de3 -DIST openbabel-2.1.1.tar.gz 6149509 RMD160 c8f462c92a109344e1cfc215be169ae0889a092d SHA1 57146b146cf163a184f6470d7af1453dcb39a89a SHA256 2e36ac296d60ca2b296743e766b8180d11c18eaa46c09808abeb28934e64fbe5 -DIST openbabel-2.2.0.tar.gz 6127264 RMD160 ade8e65ab37278d9af3ff1b9cfb115437f52e0ea SHA1 5fdc084fb744d5dae4cd9ddbd52fe1f0c56c973b SHA256 a898b79336c7372c901bcc7e5f83db7b8e79f8e864be6a262f515b3e088bc607 DIST openbabel-2.2.1.tar.gz 6507473 RMD160 47c6afecc1a7c847052dcb8570eee89a52416586 SHA1 736fc5b69851d72b58545c5ba8c2bbd361d64e46 SHA256 822345d70778de1d2d9afe65a659f1719b8ca300066fb1fa2f473bc97c457e80 DIST openbabel-2.2.2.tar.gz 6621343 RMD160 95c5da693c0d34e85c0f97f23318251b89a47ddb SHA1 eff94c92f1f0e7e834874e2964056f538fa1574a SHA256 9db35a4d0c7aa26fdf845136ac883b44488740769d64c60cbcf1e68be2bcd051 DIST openbabel-2.2.3.tar.gz 6624028 RMD160 4234baf9773aa6f918bb3fa5a25cab5f657f857e SHA1 e396b27551a106e001ca6c953181657a0a53f43f SHA256 eabc8bdbd68431f441b6b40adde0861b2e99750efd21bbb4870ee0a233feae46 EBUILD openbabel-2.0.2.ebuild 667 RMD160 ee4ee93793126401b8148b2bab91df99ef0d53c5 SHA1 02301355cfc193b2d435e722afd94fcaf7e64c53 SHA256 eda3d983c1605a34a35b1a7fa415dbed3fc5279e33be1c8cbb0f9016c3c11fe5 -EBUILD openbabel-2.1.1.ebuild 693 RMD160 50e56a7c0b2726cf9b38640c0ea4536b8ba3f20a SHA1 bee5cbc6b81225ddda7fb05225ec84fc77c73f33 SHA256 22ad4f03522744f0829b1ba6948096fa7a018599fdf4f75b3e9bd1111d68bd7f -EBUILD openbabel-2.2.0.ebuild 774 RMD160 fa383243633dcb5cfd92a026ff954a15cb2fc8b8 SHA1 c693823b9734268e0f1983a15b6c99fdcb62b0cb SHA256 d97b420623375cd44d4e183e0ba29ee584b39956c6347eda16ad0a206450c277 EBUILD openbabel-2.2.1.ebuild 1525 RMD160 db02f92685f2c1535f33ebf5eb5fff5c9be28509 SHA1 79006ba52d60fee429dbf3abe6d075dd25e3c549 SHA256 a0e2355e9707dde66eb29b74d6e957fdcd4b30126cbd72e0a2c1fcf55f0155cd EBUILD openbabel-2.2.2-r1.ebuild 2009 RMD160 24cf1bbabd3e1a3c06ca31ecd40ef1ad1b230dfe SHA1 e5da6a81e80cbd7bdbd4f2fc5e2f28d005c84029 SHA256 4f99b58e5ee352551bb7e3d80c084951df9e38647c4f5706df49b460fd008dc6 -EBUILD openbabel-2.2.2.ebuild 1287 RMD160 fcc84c67cf3c2c944120de05e92e185920e475ee SHA1 25a88c3f7065ceb606bc35f40d65f814edac02a4 SHA256 0b1066901bb69bc451df637f2599e13f97cd1eb5f5eee0d72d777a5dfc0e209d EBUILD openbabel-2.2.3.ebuild 2006 RMD160 82b5ada8c46548165617b88d9742c2e82710c317 SHA1 3fe84ebc77c6745dcabf999ded77edf14007da62 SHA256 3e0b65071e85ce43b675a528848dcd1d0866200cd0e1fc5d5a9e8fa2325db64e -MISC ChangeLog 5375 RMD160 8e695b119060587db2ebbab748ae6a106ec6505b SHA1 31f7a7394d0ec54321da53270f0df71bb5f181d9 SHA256 9e8c8feed7b585f3605e7fb8a4c43c6c01b7892c0e178476c774653f8ead337d +MISC ChangeLog 5617 RMD160 1d1a30bfdd5803dbba14421de60c47385cadf1c7 SHA1 634105dd8c504ea1d2a5302f6735e2cfdef766df SHA256 b31f2cf6a6c17d4a6ae2b9e2501fb488c7a748dc88e60adec95bde05ba9340b9 MISC metadata.xml 574 RMD160 de480e8ffc0e8c12f3e3d7254daddcf93c8aeb35 SHA1 ff5f154d3514a400db3424496fe9066587f6a731 SHA256 b8fa09ae4d94de3b0ba7233976cfe754060c06a43e583954126cac14193bb07e diff --git a/sci-chemistry/openbabel/files/openbabel-2.2.0_beta4-obconversion_api_fix.diff b/sci-chemistry/openbabel/files/openbabel-2.2.0_beta4-obconversion_api_fix.diff deleted file mode 100644 index 14aa4a0fa21f..000000000000 --- a/sci-chemistry/openbabel/files/openbabel-2.2.0_beta4-obconversion_api_fix.diff +++ /dev/null @@ -1,110 +0,0 @@ ---- include/openbabel/obconversion.h 2008-02-29 14:06:19.000000000 -0500 -+++ include/openbabel/obconversion.h 2008-04-20 20:17:14.000000000 -0400 -@@ -49,6 +49,9 @@ - - OBERROR extern OBMessageHandler obErrorLog; - -+ typedef std::map<const char*,OBFormat*,CharPtrLess > FMapType; -+ typedef FMapType::iterator Formatpos; -+ - //************************************************* - /// @brief Class to convert from one format to another. - // Class introduction in obconversion.cpp -@@ -75,7 +78,7 @@ - static OBFormat* FormatFromMIME(const char* MIME); - - ///Repeatedly called to recover available Formats --// static bool GetNextFormat(Formatpos& itr, const char*& str,OBFormat*& pFormat); -+ static bool GetNextFormat(Formatpos& itr, const char*& str,OBFormat*& pFormat); - //@} - - /// @name Information -@@ -142,7 +145,7 @@ - { return &OptionsArray[opttyp];}; - - ///@brief Set an option of specified type, with optional text -- void AddOption(const char* opt, Option_type opttyp, const char* txt=NULL); -+ void AddOption(const char* opt, Option_type opttyp=OUTOPTIONS, const char* txt=NULL); - - bool RemoveOption(const char* opt, Option_type optype); - -@@ -279,7 +282,7 @@ - - protected: - bool SetStartAndEnd(); --// static FMapType& FormatsMap();///<contains ID and pointer to all OBFormat classes -+ static FMapType& FormatsMap();///<contains ID and pointer to all OBFormat classes - // static FMapType& FormatsMIMEMap();///<contains MIME and pointer to all OBFormat classes - typedef std::map<std::string,int> OPAMapType; - static OPAMapType& OptionParamArray(Option_type typ); - ---- src/obconversion.cpp 2008-02-29 14:06:05.000000000 -0500 -+++ src/obconversion.cpp 2008-04-20 20:18:28.000000000 -0400 -@@ -324,6 +324,42 @@ - return count; - } - -+ FMapType& OBConversion::FormatsMap() -+ { -+ static FMapType* fm = new FMapType; -+ return *fm; -+ } -+ -+ bool OBConversion::GetNextFormat(Formatpos& itr, const char*& str,OBFormat*& pFormat) -+ { -+ pFormat = NULL; -+ if(str==NULL) -+ itr = FormatsMap().begin(); -+ else -+ itr++; -+ if(itr == FormatsMap().end()) -+ { -+ str=NULL; -+ pFormat=NULL; -+ return false; -+ } -+ static string s; -+ s =itr->first; -+ pFormat = itr->second; -+ if(pFormat) -+ { -+ string description(pFormat->Description()); -+ s += " -- "; -+ s += description.substr(0,description.find('\n')); -+ } -+ -+ if(pFormat->Flags() & NOTWRITABLE) s+=" [Read-only]"; -+ if(pFormat->Flags() & NOTREADABLE) s+=" [Write-only]"; -+ -+ str = s.c_str(); -+ return true; -+ } -+ - ////////////////////////////////////////////////////// - /// Sets the formats from their ids, e g CML. - /// If inID is NULL, the input format is left unchanged. Similarly for outID -@@ -486,7 +522,7 @@ - if(!ret) - { - //error or termination request: terminate unless -- // -e option requested and sucessfully can skip past current object -+ // -e option requested and successfully can skip past current object - if(!IsOption("e", GENOPTIONS) || pInFormat->SkipObjects(0,this)!=1) - break; - } -@@ -1093,7 +1129,14 @@ - - //INPUT - if(FileList.empty()) -- pIs = NULL; -+ { -+ pIs = NULL; -+ if(HasMultipleOutputFiles) -+ { -+ obErrorLog.ThrowError(__FUNCTION__,"Cannot use multiple output files without an input file", obError); -+ return 0; -+ } -+ } - else - { - if(FileList.size()>1 || OutputFileName.substr(0,2)=="*.") diff --git a/sci-chemistry/openbabel/openbabel-2.1.1.ebuild b/sci-chemistry/openbabel/openbabel-2.1.1.ebuild deleted file mode 100644 index 31c08d70b38c..000000000000 --- a/sci-chemistry/openbabel/openbabel-2.1.1.ebuild +++ /dev/null @@ -1,20 +0,0 @@ -# Copyright 1999-2008 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel/openbabel-2.1.1.ebuild,v 1.2 2008/07/06 21:00:29 markusle Exp $ - -DESCRIPTION="Open Babel interconverts file formats used in molecular modeling" -SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz" -HOMEPAGE="http://openbabel.sourceforge.net/" -KEYWORDS="~amd64 ~ppc ~sparc ~x86" -SLOT="0" -LICENSE="GPL-2" -IUSE="" -RDEPEND="!sci-chemistry/babel" - -src_install () { - make DESTDIR="${D}" install || die "make install failed." - dodoc AUTHORS ChangeLog NEWS README THANKS - cd doc - dohtml *.html *.png - dodoc *.inc README* *.inc *.mol2 -} diff --git a/sci-chemistry/openbabel/openbabel-2.2.0.ebuild b/sci-chemistry/openbabel/openbabel-2.2.0.ebuild deleted file mode 100644 index 9886092c905a..000000000000 --- a/sci-chemistry/openbabel/openbabel-2.2.0.ebuild +++ /dev/null @@ -1,28 +0,0 @@ -# Copyright 1999-2008 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel/openbabel-2.2.0.ebuild,v 1.2 2008/11/02 07:46:39 vapier Exp $ - -inherit eutils - -DESCRIPTION="interconverts file formats used in molecular modeling" -HOMEPAGE="http://openbabel.sourceforge.net/" -SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz" - -KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86" -SLOT="0" -LICENSE="GPL-2" -IUSE="" - -RDEPEND="!sci-chemistry/babel - dev-libs/libxml2" -DEPEND="${RDEPEND} - dev-libs/boost - dev-lang/perl" - -src_install() { - emake DESTDIR="${D}" install || die "make install failed." - dodoc AUTHORS ChangeLog NEWS README THANKS - cd doc - dohtml *.html *.png - dodoc *.inc README* *.inc *.mol2 -} diff --git a/sci-chemistry/openbabel/openbabel-2.2.2.ebuild b/sci-chemistry/openbabel/openbabel-2.2.2.ebuild deleted file mode 100644 index 2a4177ca0d1d..000000000000 --- a/sci-chemistry/openbabel/openbabel-2.2.2.ebuild +++ /dev/null @@ -1,59 +0,0 @@ -# Copyright 1999-2009 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel/openbabel-2.2.2.ebuild,v 1.2 2009/07/20 21:47:17 mr_bones_ Exp $ - -EAPI=1 - -inherit eutils - -DESCRIPTION="interconverts file formats used in molecular modeling" -HOMEPAGE="http://openbabel.sourceforge.net/" -SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz" - -KEYWORDS="~amd64 ~hppa ~ppc ~ppc64 ~sparc ~x86" -SLOT="0" -LICENSE="GPL-2" -IUSE="doc" - -RDEPEND="!sci-chemistry/babel - >=dev-libs/libxml2-2.6.5 - sys-libs/zlib" - -DEPEND="${RDEPEND} - >=dev-libs/boost-1.33.1 - dev-lang/perl - doc? ( app-doc/doxygen )" - -src_unpack() { - unpack ${A} - cd "${S}" - epatch "${FILESDIR}/${PN}-2.2.0-doxyfile.patch" -} - -src_compile() { - econf \ - --enable-static \ - || die "econf failed" - emake || die "emake failed" - if use doc ; then - emake docs || die "make docs failed" - fi -} - -src_test() { - emake check || die "make check failed" -} - -src_install() { - emake DESTDIR="${D}" install || die "make install failed" - dodoc AUTHORS ChangeLog NEWS README THANKS - cd doc - dohtml *.html *.png - dodoc *.inc README* *.inc *.mol2 - if use doc ; then - dodir /usr/share/doc/${PF}/API/html - insinto /usr/share/doc/${PF}/API/html - cd API/html - doins * - fi -} |