Removed old, Version Bump

Package-Manager: portage-2.2_rc67/cvs/Linux x86_64

5 files changed, 15 insertions, 155 deletions

diff --git a/sci-chemistry/refmac/ChangeLog b/sci-chemistry/refmac/ChangeLog
index 3a4af17923a4..3bb87107b4ac 100644
--- a/sci-chemistry/refmac/ChangeLog
+++ b/sci-chemistry/refmac/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-chemistry/refmac
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.13 2010/07/03 08:33:57 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.14 2010/07/06 06:34:38 jlec Exp $
+
+*refmac-5.6.0081 (06 Jul 2010)
+
+  06 Jul 2010; Justin Lecher <jlec@gentoo.org> -refmac-5.6.0077.ebuild,
+  -refmac-5.6.0078.ebuild, -refmac-5.6.0079.ebuild, +refmac-5.6.0081.ebuild:
+  Removed old, Version Bump
 
 *refmac-5.6.0080 (03 Jul 2010)
 
diff --git a/sci-chemistry/refmac/Manifest b/sci-chemistry/refmac/Manifest
index 3b93838cda68..f2425b97ed96 100644
--- a/sci-chemistry/refmac/Manifest
+++ b/sci-chemistry/refmac/Manifest
@@ -7,26 +7,22 @@ AUX 5.5.0110-allow-dynamic-linking.patch 2265 RMD160 191b90c619a3a0a6cd71b819b45
 AUX 5.6.0075-allow-dynamic-linking.patch 1447 RMD160 5b4eca9f5e03aa0dea24fe4e391c363b3600eb4a SHA1 a3e4989d6b68c77e69e1bfcb76ddbc98c6e7a157 SHA256 0e54d70ac56326422158d19268432772813d34b653b041554ac6e08981ff0140
 AUX 5.6.0078-allow-dynamic-linking.patch 3254 RMD160 0136fa28503c10c07ae3e7b653c04cd1e03e3641 SHA1 8b896a003dad2ab840bd7310871fab8191930de6 SHA256 ad4c0feaefcdac5b834549f99ae69aa0b0b33c37332e7e385ee04258b4c51326
 AUX 5.6.0080-allow-dynamic-linking.patch 3680 RMD160 656b50c14ae3b8b886967c39bb73c22d5e8c9ea1 SHA1 bab840c675e4628ee2220c87859fd08f0e88b95b SHA256 1aa6c02ec0aa04e044c5627d649b09402d7d95c44752f9137f62e5d513b171d9
-DIST refmac5.6_source_v5.6.0077.tar.gz 1281296 RMD160 3af10c692dcca23bce735b6b45c129c4a1c029e6 SHA1 881d3e456436e15073be495a340504770884e06f SHA256 9f5df52e5b42d5c4e83388f9acd900461c66b76b25248fb539432d4dacb38d50
-DIST refmac5.6_source_v5.6.0078.tar.gz 1285576 RMD160 9d5a56a6ae5f5cd03b081607a9916ba543d258a1 SHA1 cc5543cddfbd9f4dfb9105c6472f091cffca7e38 SHA256 a23d657098d890c2ce2c20de35865f512b841c1357611ae3aca31897df1ab832
-DIST refmac5.6_source_v5.6.0079.tar.gz 1285637 RMD160 462ba6f5814d724f678ca39f00b52dc4b0ac0649 SHA1 386d48b905e1297983d84f35d0ab276583494153 SHA256 47a943344962e0559ba1d3c57d0c6562cee03013a62b9c1b66dce4e574a409d7
 DIST refmac5.6_source_v5.6.0080.tar.gz 1317431 RMD160 13f306092428bf87a29fa456c03f33c318183110 SHA1 17796be16dbbf4d442fed8814edbf6bb175a4aaf SHA256 cae4017c5a75b185c99a5460c96386978f7959c28c870b80ec9df272f9b3da53
+DIST refmac5.6_source_v5.6.0081.tar.gz 1317646 RMD160 5b9e04d8b48f6f1445b192c6f592b0a7870e94d6 SHA1 b664dbcba778852137bbc13012d1bb8bff214e6e SHA256 8004eef62d6b37975b83eb5f8a92d4779022823d7a1e2130c53e0a41ced29027
 DIST refmac_5.5.0109.tar.gz 1326779 RMD160 3b603c13638407cceb907bd43ac0a971b587c116 SHA1 3cc35a55df71bac4de3eec9cf0e690e221ae3c86 SHA256 38d416c94e1f86a0676d48d7ddaeb4af272970b8cd6b084e70aa38481327c59e
 DIST refmac_5.5.0110.tar.gz 1326832 RMD160 6613ca8b70e54e7827f8ff02b7d497560cb83e39 SHA1 ba2e38db6c88550bd901b474de881d6514b4d74e SHA256 1353fb1042586ec8fa37d0a90f274890d0ccc02377af5216200662338dfe08ca
 DIST test-framework.tar.gz 130933173 RMD160 7122539dc713615dca2ddaddfd8d152cd22624d0 SHA1 1d3e3019a67afb9b2346e919c859d402d3250fea SHA256 df050a2a29da80518cb0616a0bbeb82298ea0721549348d15353bf0f66240605
 EBUILD refmac-5.5.0109.ebuild 1760 RMD160 7d38ec3480c3716698a1926815414c02dae4fe32 SHA1 b4d08deabb66f10f2a40f289249c568b8002c536 SHA256 8a790eeb7b8510d5f2780470a900f7618368dc48c45d1e2599cbf6bf8cc64fd8
 EBUILD refmac-5.5.0110-r1.ebuild 1787 RMD160 9017aa6e2f7d9d764904eeeb624c448025583701 SHA1 9252ba8e478ec48e5bba99678c8dde60f4d4ac2f SHA256 bdf76b64a98146b57cd6037473206041a181f893f19b6d0275b950d7560aa1a6
 EBUILD refmac-5.5.0110.ebuild 1805 RMD160 80e546666e72290365c99c542abcef90a3394bb8 SHA1 a1731838742679b66984018fb8d25b8dbb11ae29 SHA256 8f825fc7f75854d631d6c6b037398237b8231a9fdc162e9ab1c6a46490b0a957
-EBUILD refmac-5.6.0077.ebuild 1789 RMD160 e5433f715ae0693c4ccbf65cb44f64b988199ea2 SHA1 dfaa458bfa184ffc2118bcc13e0a3b30caa472e8 SHA256 f23cc970ed7fc6766fddd8ceef788c58fd254bbe2be53f9df14561a06c13b1be
-EBUILD refmac-5.6.0078.ebuild 1786 RMD160 3a75889780b1118f2481991a56b95e62ab8363c4 SHA1 537ab12d16126fff356781f66b1d3aa2edb49117 SHA256 e43fce8f9a0fd05c6a02edb534c09a31017b2bf9274886ee0755993078e23520
-EBUILD refmac-5.6.0079.ebuild 1792 RMD160 e013a579d25f02149d1a990f8169ed612a072cde SHA1 f203e1bf374ec9af4ed37f6cbeea33ce15cfd998 SHA256 987d7ab0ab86168df29edc608d02d1dddea421bac0ee8e93541eee035894b112
 EBUILD refmac-5.6.0080.ebuild 1786 RMD160 5851ff9ac4b5fbb60bbc76baca5a2cf060ed5d69 SHA1 5eeaef1b03d2bda2be97fe43defd5e0602661750 SHA256 c891536606c9ad16198d181a6938012b2c1c6b0fde35bfedb96d44a6e1ec8eb5
-MISC ChangeLog 2298 RMD160 b65adc697a377c370b2275e83ff3c4cc44ad32d8 SHA1 cf3fa1dfbeac6429243ab89ec7d4f83879ab8d69 SHA256 c3e010266bfa745733f40683fa9ab453ed30fdae14f9059e711f8a9d3a39a8c6
+EBUILD refmac-5.6.0081.ebuild 1792 RMD160 9fb29278ced8c0031e1b45a376dc2a0a49ed48cc SHA1 edf2cc6c101a9858a879f69cb2a5fff84243f3bf SHA256 46d0434beb7b7b121bbbf96feea5c2b93cef3b5b7a3422195622ac539ad3798f
+MISC ChangeLog 2508 RMD160 dfd445e8e68a6c372d0a4e7e302a5dec6d15fee9 SHA1 d1c89e8c03b33b2807ebd586726a4b26083be375 SHA256 4c5549409faba32aba315bda80b512f0b04c26873876dc7cbebee2b2016abc58
 MISC metadata.xml 311 RMD160 df83b13d491a71b729455b664088d89ddbde1c8c SHA1 fffd2a5645181aa12ac9b6f74da9a011cdcf1b97 SHA256 782521c7e16d7eec82d7b7e7c43102806e7f72bc7366401808b1e1ac6e26045a
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0.15 (GNU/Linux)
 
-iEYEARECAAYFAkwu9fsACgkQgAnW8HDreRZogACgkbhbQUMLMAGX71l1JRLhx6P8
-TjcAn097ZkMwXIygOIhbAcfgPmFIK72+
-=eBOK
+iEYEARECAAYFAkwyzoQACgkQgAnW8HDreRYaUQCgxA8SugKP2liw5lPaW1vbrRms
+MLwAoMM33rlsOSWR3SEdOu46+vyF/zMe
+=dk71
 -----END PGP SIGNATURE-----
diff --git a/sci-chemistry/refmac/refmac-5.6.0078.ebuild b/sci-chemistry/refmac/refmac-5.6.0078.ebuild
deleted file mode 100644
index 057fbe9d5c91..000000000000
--- a/sci-chemistry/refmac/refmac-5.6.0078.ebuild
+++ /dev/null
@@ -1,71 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0078.ebuild,v 1.1 2010/06/28 04:48:15 jlec Exp $
-
-EAPI="2"
-
-inherit fortran base toolchain-funcs versionator
-
-MY_PV="$(get_version_component_range 1-2)_source_v${PV}"
-
-DESCRIPTION="Macromolecular crystallographic refinement program"
-HOMEPAGE="http://www.ysbl.york.ac.uk/~garib/refmac/"
-SRC_URI="${HOMEPAGE}data/refmac_experimental/${PN}${MY_PV}.tar.gz
-	test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )"
-
-SLOT="0"
-LICENSE="ccp4"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="test"
-
-RDEPEND="
-	sci-libs/ccp4-libs
-	sci-libs/mmdb
-	>sci-libs/monomer-db-1
-	virtual/blas
-	virtual/lapack"
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}"
-
-PATCHES=(
-	"${FILESDIR}"/${PV}-allow-dynamic-linking.patch
-	)
-
-src_prepare() {
-	base_src_prepare
-	use test && epatch "${FILESDIR}"/5.5-test.log.patch
-}
-
-src_compile() {
-	emake \
-		FC=$(tc-getFC) \
-		CC=$(tc-getCC) \
-		CXX=$(tc-getCXX) \
-		COPTIM="${CFLAGS}" \
-		FOPTIM="${FFLAGS:- -O2}" \
-		VERSION="" \
-		XFFLAGS="-fno-second-underscore" \
-		LLIBCCP="-lccp4f -lccp4c -lccif -lmmdb -lstdc++" \
-		LLIBLAPACK="$(pkg-config --libs lapack blas)" \
-		|| die
-}
-
-src_test() {
-	einfo "Starting tests ..."
-	export PATH="${WORKDIR}/test-framework/scripts:${S}:${PATH}"
-	export CCP4_TEST="${WORKDIR}"/test-framework
-	export CCP4_SCR="${T}"
-	ln -sf refmac "${S}"/refmac5
-	sed '/^ANISOU/d' -i ${CCP4_TEST}/data/pdb/1vr7.pdb
-	ccp4-run-thorough-tests -v test_refmac5 || die
-}
-
-src_install() {
-	for i in refmac libcheck; do
-		exeinto /usr/libexec/ccp4/bin/
-		doexe ${i} || die
-		dosym ../libexec/ccp4/bin/${i} /usr/bin/${i}
-	done
-	dosym refmac /usr/bin/refmac5 || die
-}
diff --git a/sci-chemistry/refmac/refmac-5.6.0079.ebuild b/sci-chemistry/refmac/refmac-5.6.0079.ebuild
deleted file mode 100644
index baac0a232c81..000000000000
--- a/sci-chemistry/refmac/refmac-5.6.0079.ebuild
+++ /dev/null
@@ -1,71 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0079.ebuild,v 1.1 2010/07/02 06:36:10 jlec Exp $
-
-EAPI="2"
-
-inherit fortran base toolchain-funcs versionator
-
-MY_PV="$(get_version_component_range 1-2)_source_v${PV}"
-
-DESCRIPTION="Macromolecular crystallographic refinement program"
-HOMEPAGE="http://www.ysbl.york.ac.uk/~garib/refmac/"
-SRC_URI="${HOMEPAGE}data/refmac_experimental/${PN}${MY_PV}.tar.gz
-	test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )"
-
-SLOT="0"
-LICENSE="ccp4"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="test"
-
-RDEPEND="
-	sci-libs/ccp4-libs
-	sci-libs/mmdb
-	>sci-libs/monomer-db-1
-	virtual/blas
-	virtual/lapack"
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}"
-
-PATCHES=(
-	"${FILESDIR}"/${PV/79/78}-allow-dynamic-linking.patch
-	)
-
-src_prepare() {
-	base_src_prepare
-	use test && epatch "${FILESDIR}"/5.5-test.log.patch
-}
-
-src_compile() {
-	emake \
-		FC=$(tc-getFC) \
-		CC=$(tc-getCC) \
-		CXX=$(tc-getCXX) \
-		COPTIM="${CFLAGS}" \
-		FOPTIM="${FFLAGS:- -O2}" \
-		VERSION="" \
-		XFFLAGS="-fno-second-underscore" \
-		LLIBCCP="-lccp4f -lccp4c -lccif -lmmdb -lstdc++" \
-		LLIBLAPACK="$(pkg-config --libs lapack blas)" \
-		|| die
-}
-
-src_test() {
-	einfo "Starting tests ..."
-	export PATH="${WORKDIR}/test-framework/scripts:${S}:${PATH}"
-	export CCP4_TEST="${WORKDIR}"/test-framework
-	export CCP4_SCR="${T}"
-	ln -sf refmac "${S}"/refmac5
-	sed '/^ANISOU/d' -i ${CCP4_TEST}/data/pdb/1vr7.pdb
-	ccp4-run-thorough-tests -v test_refmac5 || die
-}
-
-src_install() {
-	for i in refmac libcheck; do
-		exeinto /usr/libexec/ccp4/bin/
-		doexe ${i} || die
-		dosym ../libexec/ccp4/bin/${i} /usr/bin/${i}
-	done
-	dosym refmac /usr/bin/refmac5 || die
-}
diff --git a/sci-chemistry/refmac/refmac-5.6.0077.ebuild b/sci-chemistry/refmac/refmac-5.6.0081.ebuild
index b06b2298fd96..19b0a2303aa7 100644
--- a/sci-chemistry/refmac/refmac-5.6.0077.ebuild
+++ b/sci-chemistry/refmac/refmac-5.6.0081.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2010 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0077.ebuild,v 1.2 2010/06/16 14:27:33 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0081.ebuild,v 1.1 2010/07/06 06:34:38 jlec Exp $
 
 EAPI="2"
 
@@ -29,7 +29,7 @@ DEPEND="${RDEPEND}"
 S="${WORKDIR}"
 
 PATCHES=(
-	"${FILESDIR}"/5.6.0075-allow-dynamic-linking.patch
+	"${FILESDIR}"/${PV/81/80}-allow-dynamic-linking.patch
 	)
 
 src_prepare() {