summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorJustin Lecher <jlec@gentoo.org>2013-11-19 11:38:43 +0000
committerJustin Lecher <jlec@gentoo.org>2013-11-19 11:38:43 +0000
commitdb99670fae65ec077ac9c131fa60584ba8f2b1de (patch)
tree532efe31acdfa36f710cdc91234e9c6842d039c5 /sci-chemistry/ccpn
parentStable for amd64 wrt bug #489854 (diff)
downloadhistorical-db99670fae65ec077ac9c131fa60584ba8f2b1de.tar.gz
historical-db99670fae65ec077ac9c131fa60584ba8f2b1de.tar.bz2
historical-db99670fae65ec077ac9c131fa60584ba8f2b1de.zip
sci-chemistry/ccpn: Add todays python patches
Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
Diffstat (limited to 'sci-chemistry/ccpn')
-rw-r--r--sci-chemistry/ccpn/ChangeLog8
-rw-r--r--sci-chemistry/ccpn/Manifest31
-rw-r--r--sci-chemistry/ccpn/ccpn-2.3.1_p131119.ebuild166
-rw-r--r--sci-chemistry/ccpn/files/talosn.patch16
4 files changed, 206 insertions, 15 deletions
diff --git a/sci-chemistry/ccpn/ChangeLog b/sci-chemistry/ccpn/ChangeLog
index c6767c09225c..853e603fa48d 100644
--- a/sci-chemistry/ccpn/ChangeLog
+++ b/sci-chemistry/ccpn/ChangeLog
@@ -1,6 +1,12 @@
# ChangeLog for sci-chemistry/ccpn
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.126 2013/11/07 15:58:24 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.127 2013/11/19 11:38:42 jlec Exp $
+
+*ccpn-2.3.1_p131119 (19 Nov 2013)
+
+ 19 Nov 2013; Justin Lecher <jlec@gentoo.org> +ccpn-2.3.1_p131119.ebuild,
+ +files/talosn.patch:
+ Add todays python patches
*ccpn-2.3.1_p131107 (07 Nov 2013)
diff --git a/sci-chemistry/ccpn/Manifest b/sci-chemistry/ccpn/Manifest
index 1c24678981a7..f29a7e06755f 100644
--- a/sci-chemistry/ccpn/Manifest
+++ b/sci-chemistry/ccpn/Manifest
@@ -15,6 +15,7 @@ AUX eci 303 SHA256 e54ccd50ae69d94ba3f72c347b974e1b878bd63e28fd4c43a6b095e187daf
AUX extendNmr 302 SHA256 4c483a09abf5fa3043a51dda55e7f528faecbf56769a3306f397b3848137cee6 SHA512 c8209a6c9a4791440c80e57b9a495667f53eb4599018b58f6016ff0d1dd91d45dc2e45f283d30e6b571cbca81ea84c3eea8f2583039c93021f465bdf7b8c1d10 WHIRLPOOL 65082f381ebda803d348caec18ed33ea49996e82bd6431e1aabb0632992c059c8acf9a4330f61c222041dd75096c6463dba3507a9022c49a8b95bd11d9925784
AUX formatConverter 322 SHA256 86b2613d7842ee3777fd98889abe6450266140d6fe6ed7d071db6b549c2afb65 SHA512 aa27df8af876130fb485f348fac86fb324df74cb0f3f210aa722291e5acb7267097963228f0946674d86f439f8ea90d7aed3b280757e02752d594e093d35a5f4 WHIRLPOOL 0c57a44ce935606846d877026c4471bea342a4a2a2ea667cc227d6048e476c476a5539ad3c3cfb861bfb5d47e2021a582813d1bf46d5fa2a220347d9745e052a
AUX pipe2azara 326 SHA256 8b17d8c11dcbfeac21da3ad927e2e8de73509d21e9250c328fbea1aba658611c SHA512 7800e97886e172b9891b6221f1b38889c216a548eb38984b8806b15f006296ab561ef514f65259cbc5f9acd48bc7e2db6330952f4e92d8c16e41b36b396f109f WHIRLPOOL 7a61785e73e3e09f38a0d7a2a88246672116775db2cb8117359c9d665b25d3e2907f936f3527d15f3441ade5b026c1d0ed918547fef23408897f550c6b36237e
+AUX talosn.patch 1358 SHA256 55e4e412158b851f040ac25d93b8b1a42ffa6354c26327cb8803288621787518 SHA512 fb4b74d0b07b9edf47135bb5d965b485ee62fde8e33c3b4dffb09092063368de6ae54435fc82aca87d88dd9a71cb1abb96446241c7d433bd2b0b1801e3e5ed5b WHIRLPOOL 5ff7c76822d8de0545d235118d50b80c0c6321d6b11ce9f3f0d1f36ae0c68d9d5753fdc8f81ef95b46345085c5dd6a349fdc70ff7f22a7e195fcf26d4475211c
AUX xeasy2azara 324 SHA256 89945dae1c7bd78aefdd19c81c79571a13aaa149d6c50e12cc0ecd075930ed4c SHA512 de31df36c259fa58483c6a0e24bfa6ece3a86db5d556c5c99f610c7c2ff659742fcf319ef387538cc5a74444bf4be8ffff96da7ee819ac583e2605f4f90a5806 WHIRLPOOL 6a40d21fa7cef520de86f04282b5e26e3a8809c7a8caed8e19a0758419039358e1b1f33a53f956bc77a10cddda703cce8f21584d8e9e3648fccca3a486ab9be8
DIST analysis2.1.3_1.tar.gz 18932918 SHA256 bbc1ba5434f896d38b6745c1dc9adc470a78d3be7b879160edcd635a19228b74 SHA512 ee95119a972ada7949d646e0fd634d1828bba7562d7ea3a3be1c2b17d22f194dbd1267716f21ce86fffb3eadec136b0b613705f862747ab7933cb2ad57e063b8 WHIRLPOOL 1fb19a4bc676955eca4168595fad0661054061e18fa6e25e7f4ed5026cf31faba75b7644a8e2e18ece10e9641efc81feaccf580d3c766bda1d5232a346d99133
DIST analysis2.2.2.tar.gz 21044504 SHA256 8e46d12b8fb7763d282933e14ddfa9ce197954ed9fbfa2333e22602ac841b6e5 SHA512 efe8a82381521dbfb95b12dd553f401f200aee3763f9e739c37a9141a14bf038865b2a860b0353adc532582697b58079034386be42161aecbe231952b8abaac7 WHIRLPOOL c9d7fc936dc25b952e711e8fa439ada5a67e68497b6d4ad034586e604bcbd9d1ff7dd48d1a3baace347fc9bab5c17d2f7852906f921708a16ce8c8eb4a8659b9
@@ -39,6 +40,7 @@ DIST ccpn-update-2.3.1-131010.patch.xz 7352 SHA256 f447df5334aac40847c9796421b5a
DIST ccpn-update-2.3.1-131015.patch.xz 7676 SHA256 df46e2f39ff6a9feda6bd9d4480d94af0f0282e318f6e3e27fc3d5b6ee1888db SHA512 c1ba9a0b9766a5317564978159a7e7c3176d382ff0e5d4547a372666309c614079254e772921761010e23ce61a81b1cdf4f99b3b58880ab9901ab372adea1055 WHIRLPOOL 4d008ac4c4861083091c557485afe0efd9dcfd982f1c241987743cb494f36ab084b27449cf2e528c2b95e2048dc67e90e58a4e0e3de283b81e17478b6900cff9
DIST ccpn-update-2.3.1-131018.patch.xz 8152 SHA256 03d51dd46b68b426dce8dcdc479add7a3c865c98da1528854538422ebfb93952 SHA512 cf396501bdabca724cf691cb35a7acaafc5b7253f15eaf6c286a52afbf629b1babadd837facbafe50d9a960699647640ffc009ae58da4cd1c288b752ce8a96fc WHIRLPOOL dbb69d3df269cd569939783963243496552b3ea551a5e7e4362d2815aad533142a884183ca1bed3af4c54933eb03e835cc9b46662dc8021705507eeabbb6b2d3
DIST ccpn-update-2.3.1-131107.patch.xz 9316 SHA256 d01b8cdde7f459027b731649526fa8bd84ce3fff6a3e10df8b26bd3a52df80dd SHA512 c18784d29d7f15ddf74229d0a44162595d953db76663450101e2d65ca7834dafd0137c2f5742d66a7b89a4af57149f49ce0bb01e62c198da3c93ca3c6a4c2002 WHIRLPOOL ef571e4a279a15e434bd264d9f1213c610a79dc9d9e4c0318ac99b29213ee2018ca02617b62632a791f61b9c7479586567983a43c698f4423d90a9aaa554c7d1
+DIST ccpn-update-2.3.1-131119.patch.xz 9908 SHA256 c6098bed0078773a5a1adb91ed5c02d202845d9fe2a94481b0ea1e0556c2475a SHA512 30a3c7b203eb49de974de6eb5c466a82be58a7679bb0798770adf0011e05cde1130b79453ac407cb43c03f6be464db04b5bff3fddb5c09952ae182343253fcc5 WHIRLPOOL e8bfffda3d08c7fdbd00b905a9d8f6fca736f64b54ec39b6d31120381af2503e1cdf9f338cbcebe5eddf398b5eb4cc576147e9d7bfe06a44fd0a642e466a8dda
EBUILD ccpn-2.1.3.1_p100806.ebuild 5181 SHA256 c3ba268461da63ea23ee7f621a8e4837a368eb3e4c85bcc5245250fb6b377b58 SHA512 701ea90a13dc44e5bf1ea17c0f69adea56b1c14788ab79c67fa4b9726cae532998717515568045aec9bb4e1dd4c352227130115d90c50bf07e7fd132cdee385d WHIRLPOOL 898a618f95b254785739e6fab20af333cb3a44bff12cd6840d1b111f1588a60e48055e8af7ca88457173452f6acba86ebd3bada96390211bc4cd063fe4160fd5
EBUILD ccpn-2.2.2_p121125.ebuild 4612 SHA256 08a4b0682c049a6301138ea6f24d665edb0a8d8d709ed2c2f2529aa0a5e648a1 SHA512 f8c45f0b19a721775dab3147cced933e8db969e8443c15cd2bd2a31ffc3fcd0eda95acc75a93df5d0dd51dabd80fde8311a7b02bf3f6a051bc0855cb156755a5 WHIRLPOOL 427cacc0c080197cc79a867f1cf1d5bed45cbfbb0f8c5dc6456548218895ff25023ea30090e751af78b77fffd47f87f7aac3869a8ed13aa3727f2f12bac743b1
EBUILD ccpn-2.2.2_p130110.ebuild 4649 SHA256 53125900943ea89ba3d3483de29a240a0e7282098af869a04bc926c34f3bf51f SHA512 8406a93562897aadfefd03e098b393af5fb29f9bfde8e5727b73ceb6cbe004b73cfd97b61e942189d9fba717761b20cc4914e5c9d858f36bbdbdeea1369490e7 WHIRLPOOL 112e9cab77898ef9246b127d5ef8529948cfaf91157a25bbe39899560af8340f8e5cbd1e2a3935dae083a9291f0d569d3cc5b7588dc2029f3342ecbe5590cb0f
@@ -60,22 +62,23 @@ EBUILD ccpn-2.3.1_p131010.ebuild 4685 SHA256 8d98fd88b576a617f7b55d9b0de3ee54418
EBUILD ccpn-2.3.1_p131015.ebuild 4685 SHA256 0215b6ff8c9ee7247a3b4fbb48a9c37f9e7c95623d08afb7a50590134fca5e7e SHA512 fea0e8f85e82d0b4af0551465546cd78226126d7dbb2315949309a09854245db798f9054140f2355b687937c308c5365c672ccb3315cad8bd5e09f99b8a89bdf WHIRLPOOL 68ce200e5efbba9fbee4e0fa95f4a479868881655b51f76a2989a8079d2b30ad05a305270cbc862b9b39f259b9854bb8b6e4b66d7c446526e35ceef71b787984
EBUILD ccpn-2.3.1_p131018.ebuild 4685 SHA256 b8274f2e758b6e7c3416cb8d424f4c5b5472ecd61ea7b7c59db9194c65e8f26e SHA512 8acb386dff52261169bb0e1f219d14107a8ec28494e61c6263ae71ff968140300a99c74fca495aa75c57cd81e1adfd05ed44f80abcb2d63bfe9a635cff63a35a WHIRLPOOL 39688e03bf1cf9e189c1ad0cf349be0fa6895efffd4afa05f472881dc732f6f3e0ea90e7715b7709be713d20535aa20801a66f6f044894c93d6e1241623dec7a
EBUILD ccpn-2.3.1_p131107.ebuild 4685 SHA256 e4cf9af1788357b96c1f8e805dbc19be0604af6b34cb983fe0aa735f95b6e290 SHA512 5ad8389563552d00b28ce067b76a592365e6d61a8d6aab85650e2c8031a60bfe912ee0f7bdfec536157e07a3e62bcf82735986e0faf5be3d52778a56d5c1596b WHIRLPOOL 6309bfd9355ed20089341820ff77bb8dc70100ebb937f9604a0222c85d070e4dd88e27693e6ab7c229fffdaa9a36cf531b54feb2c18f302e716191315d6f5318
-MISC ChangeLog 23980 SHA256 cfc5bf5f6cb29b7093b0de8b836612db1c5f4aee55a8587d093861a242f061ee SHA512 2698fabb55d74a29b9af9045a9bf503cb32430fbe89a3edb4dddd3dffedab1f26a22018e601bcd541bccf9915b2805ed097192a444b875be72bc30ff277a176e WHIRLPOOL 53ad12cb95379c86446176b672c77d935456364a64851143569ce2dad0802dac47e460b01236b9c634e12d01fb826c5793d6ae346ab4e22fb54d7a543e86f043
+EBUILD ccpn-2.3.1_p131119.ebuild 4712 SHA256 304c3c6a3748eaa478d98b3af95668cef50262c5f6c7a872dbace8c828bca594 SHA512 678ea73d436550565828f682cf90382ed7f3fd166f9daea8643998781099a561899e7b6db5a53b691950f0c67440caabf3b087608db9532c17db2ac02e277c0c WHIRLPOOL 5f19462b456bae09a6983351c894735dd5c58f244154c8b30a54bda1d564d9728cb13fe779d47b46d2bbedb4a27fd7d575f73613fdcb10484b694ba6117e3d60
+MISC ChangeLog 24142 SHA256 ba4264a7cea98a8caae06642a1c6aa18d188723a2411f5f5f14f7adf2d3fc5e2 SHA512 ff99f8957c5b136a9076b9c0517be97bf96e261a7a90fbc04bdf32f167a69711c060e88063b64f4908f714998413bd68b42767f04be3cfb2f493102ba3b3f4f7 WHIRLPOOL 719334c759ee6cf7551cca53f76d2c2cc89d82438f422adaa0ad8003e7774b18fded26ecb88ba0d5c9d729608e4db0139ee596d92bdd56f7fee1c740254976cf
MISC metadata.xml 234 SHA256 8297e76ecd2cb828f604e9f138b263179eb84beb640215a0f60d7613eb46bb7f SHA512 0e94c0e6570a9267a39968d81c3b80680ccbc6eebb62199e4830b021a114c94a0de17ef2103cef62b7e27da1f51f225a30abb802aff82140ae6dc43366113d31 WHIRLPOOL fa6d4d90b092953b88ed3ad03e1e8c189296d268b39d13a4b4dcb78f0c4456341e3f1b44eea0860054fee43079179cb7cf7a912acf1fbe693ecdca6d9a65f081
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v2.0.22 (GNU/Linux)
-iQIcBAEBCgAGBQJSe7imAAoJELnU8jG9FVirn2MP/1eGPUsBjDKephu66DawJvnJ
-JrgkDnMPCv7PL6zMzPaY8L2VcGdHQBOjURPY/vbRhYbGcSy0n6YL6jJGWpX+iY36
-Oy+k0Niw0ZGlKHT5tUUzgNJh7oKbwKFRCOaRYBf3baUAGFUaJ+n6RESbW2GtTMfS
-2QXcsUr4YgsTPr7o2gqOkMk2RR7zQv1kqSF9nk0OvmazD0qiqf8+FeUn7m/sQ46b
-zCZrKY/wBsSAd6d83Ar44WFYTPeWu42FccIcggVifC3DrYn+j5FDp84QV1aIsqJE
-PSO8I/bjEjJqD1di+CtvhRXC8inV5advq5Xagb3nBtiaxTh95irSgN74ycrWV4Du
-C8ld1mB+1YocxCs+GWWB8/efANwxQ8NTA+8P4SM5kjNZDLQ2W61Sz8uSWOLFsvu9
-qvYr16kgkNB5RQ2AOhLy2pbGWVbYuApcgCPpq/qGxBg/z6vlAes6FhSlpXQf0HGj
-d9/3w97poWBrWhq49gXPT9f2vLhjtQuECVlHOyksZJIsKxiHYl3igRRTuD2Q+ogb
-976xR32Tip86eVolT5vbERQnWdeLihsiYH+aGVq1h2SwQHcglVDNVqxOgp5sIqEi
-QIaEWlwP6FoVIoecpoF5LAqzYtEp0UBLYYUqeFMO0G/Q9d9Dc3M2qdgDEm0L8p9z
-9A+kubRITTiC0QIpuqWi
-=lWAI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+=6TNh
-----END PGP SIGNATURE-----
diff --git a/sci-chemistry/ccpn/ccpn-2.3.1_p131119.ebuild b/sci-chemistry/ccpn/ccpn-2.3.1_p131119.ebuild
new file mode 100644
index 000000000000..d1eeb13fc87a
--- /dev/null
+++ b/sci-chemistry/ccpn/ccpn-2.3.1_p131119.ebuild
@@ -0,0 +1,166 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.3.1_p131119.ebuild,v 1.1 2013/11/19 11:38:42 jlec Exp $
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_6,2_7} )
+PYTHON_REQ_USE="ssl,tk"
+
+inherit eutils flag-o-matic multilib portability python-single-r1 toolchain-funcs versionator
+
+PATCHSET="${PV##*_p}"
+MY_PN="${PN}mr"
+MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
+MY_MAJOR="$(get_version_component_range 1-3)"
+
+DESCRIPTION="The Collaborative Computing Project for NMR"
+HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
+SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}r2.tar.gz"
+[[ -n ${PATCHSET} ]] \
+ && SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
+
+SLOT="0"
+LICENSE="|| ( CCPN LGPL-2.1 )"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="+opengl"
+
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+
+RDEPEND="
+ ${PYTHON_DEPS}
+ dev-lang/tk[threads]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-tcltk/tix
+ =sci-libs/ccpn-data-"${MY_MAJOR}"*[${PYTHON_USEDEP}]
+ sci-biology/psipred
+ x11-libs/libXext
+ x11-libs/libX11
+ opengl? (
+ media-libs/freeglut
+ dev-python/pyglet[${PYTHON_USEDEP}] )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="mirror"
+
+S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2)
+
+src_prepare() {
+ [[ -n ${PATCHSET} ]] && \
+ epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
+
+ epatch "${FILESDIR}"/${MY_PV}-parallel.patch "${FILESDIR}"/talosn.patch
+
+ append-lfs-flags
+
+ sed \
+ -e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
+ -e "s:weights_s:weights:g" \
+ -i python/ccpnmr/analysis/wrappers/Psipred.py || die
+
+ local tk_ver
+ local myconf
+
+ tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
+
+ if use opengl; then
+ GLUT_NEED_INIT="-DNEED_GLUT_INIT"
+ IGNORE_GL_FLAG=""
+ GL_FLAG="-DUSE_GL_TRUE"
+ GL_DIR="${EPREFIX}/usr"
+ GL_LIB="-lglut -lGLU -lGL"
+ GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
+ GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
+
+ else
+ IGNORE_GL_FLAG="-DIGNORE_GL"
+ GL_FLAG="-DUSE_GL_FALSE"
+ fi
+
+ GLUT_NOT_IN_GL=""
+ GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
+
+ rm -rf data model doc license || die
+
+ sed \
+ -e "s|/usr|${EPREFIX}/usr|g" \
+ -e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
+ -e "s|^\(OPT_FLAG =\).*|\1 ${CPPFLAGS} ${CFLAGS}|g" \
+ -e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
+ -e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
+ -e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
+ -e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
+ -e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
+ -e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
+ -e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
+ -e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
+ -e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
+ -e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
+ -e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
+ -e "s|^\(TK_LIB =\).*|\1 -ltk|g" \
+ -e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
+ -e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I$(python_get_includedir)|g" \
+ -e "s|^\(PYTHON_LIB =\).*|\1 -l${EPYTHON}|g" \
+ c/environment_default.txt > c/environment.txt || die
+
+ sed \
+ -e 's:ln -s:cp -f:g' \
+ -i $(find python -name linkSharedObjs) || die
+}
+
+src_compile() {
+ emake -C c all
+ emake -C c links
+}
+
+src_install() {
+ local libdir
+ local tkver
+ local _wrapper
+
+ find . -name "*.pyc" -type f -delete || die
+
+ libdir=$(get_libdir)
+ tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
+
+ _wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr"
+ for wrapper in ${_wrapper}; do
+ sed \
+ -e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
+ -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
+ -e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
+ -e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
+ -e "s|gentoopython|${EPYTHON}|g" \
+ -e "s|gentoousr|${EPREFIX}/usr|g" \
+ -e "s|//|/|g" \
+ "${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
+ dobin "${T}"/${wrapper}
+ done
+
+ local in_path=$(python_get_sitedir)/${PN}
+ local files
+ local pydocs
+
+ pydocs="$(find python -name doc -type d)"
+ rm -rf ${pydocs} || die
+
+ for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
+ sed \
+ -e 's|#from __future__|from __future__|g' \
+ -i ${i} || die
+ done
+
+ dodir ${in_path#${EPREFIX}}/c
+
+ ebegin "Installing main files"
+ python_moduleinto ${PN}
+ python_domodule python
+ eend
+
+ ebegin "Adjusting permissions"
+ for _file in $(find "${ED}" -type f -name "*so"); do
+ chmod 755 ${_file}
+ done
+ eend
+ python_optimize
+}
diff --git a/sci-chemistry/ccpn/files/talosn.patch b/sci-chemistry/ccpn/files/talosn.patch
new file mode 100644
index 000000000000..e19a0ab19783
--- /dev/null
+++ b/sci-chemistry/ccpn/files/talosn.patch
@@ -0,0 +1,16 @@
+ ccpnmr2.3/python/ccpnmr/format/general/Constants.py | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/ccpnmr2.3/python/ccpnmr/format/general/Constants.py b/ccpnmr2.3/python/ccpnmr/format/general/Constants.py
+index d10553e..fb732db 100644
+--- a/ccpnmr2.3/python/ccpnmr/format/general/Constants.py
++++ b/ccpnmr2.3/python/ccpnmr/format/general/Constants.py
+@@ -865,7 +865,7 @@ IoSetupList = [
+ 'cyana': ['dihedrals.aco',1,1, [['SelectionList','version','Cyana version:',['2.0','2.1'],None]],
+ [['SelectionList','version','Cyana version:',['2.0','2.1'],None]]],
+ 'nmrStar': ['nmrStar.str',1,0, [],[]],
+- 'talos': ['dihedral.tab',1,0, [['MultiSelectionList','validClasses','Classes for valid constraint:',['Good','New','Warn','None'],None],
++ 'talos': ['dihedral.tab',1,0, [['MultiSelectionList','validClasses','Classes for valid constraint:',['Good','New','Warn','Dyn', 'Strong', 'Generous', 'None'],None],
+ ['IntEntry','validCount','Count variable lower limit for valid constraint:',0,None],
+ ['FloatEntry','multiplyDeviation','Multiplication factor to convert deviation in constraint range:',2.0,None]],
+ []]},