QA

Package-Manager: portage-2.2_rc88/cvs/Linux x86_64

4 files changed, 14 insertions, 69 deletions

diff --git a/sci-biology/t-coffee/ChangeLog b/sci-biology/t-coffee/ChangeLog
index 5394cbb39124..1fc80b70e416 100644
--- a/sci-biology/t-coffee/ChangeLog
+++ b/sci-biology/t-coffee/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/t-coffee
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.43 2010/10/03 11:11:56 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.44 2010/10/03 11:22:54 jlec Exp $
+
+  03 Oct 2010; Justin Lecher <jlec@gentoo.org> t-coffee-5.65.ebuild,
+  -t-coffee-7.54.ebuild:
+  QA
 
 *t-coffee-8.93 (03 Oct 2010)
 
diff --git a/sci-biology/t-coffee/Manifest b/sci-biology/t-coffee/Manifest
index d9281a1437a4..721739382b2e 100644
--- a/sci-biology/t-coffee/Manifest
+++ b/sci-biology/t-coffee/Manifest
@@ -4,21 +4,19 @@ Hash: SHA1
 AUX 8.69-flags.patch 3118 RMD160 f79da4565606b5ae9a7d6d4fb949092ce4199d1b SHA1 a6c08ad84553500e3c8667a636fc0f191923462c SHA256 44449539bda6d4a84f6ba156f524b91bb2b34d12a530834256c414588228dc51
 AUX 8.69-test.patch 524 RMD160 21970ae93e40f630db15b3aaa267807e1d0cdd38 SHA1 bf27dc682ebbf4ba2a4df507f5b7e22197e9f38f SHA256 05ad8d6a9bce520d49ed7de18143067858346b18766f42e597cc0974d4d8957a
 DIST T-COFFEE_distribution_Version_5.65.tar.gz 2892013 RMD160 50c04dfbda649ebbf0e691a74bd62433bb1dbd14 SHA1 a8dc4bcc37eaa8237670c9daf1b260c8452fab89 SHA256 536cfe25648fbaf4d96baf36b3c8d4d2d81e97b2939e09e89880cae39893d0c6
-DIST T-COFFEE_distribution_Version_7.54.tar.gz 3968725 RMD160 d11964db5232d137bf0db8101dfb75b1fde25936 SHA1 a302954a10860455bc23f924628598757c39eb12 SHA256 9d7d56abc000b61b48908fa4f93fb382a35df11c883966a0119605cd16aa668e
 DIST T-COFFEE_distribution_Version_8.14.tar.gz 4202237 RMD160 b292e4d4dd6576ad10dacafbb19eaa4f9154b85c SHA1 0286f719569f6717f879b38af520939f4399ab07 SHA256 ffc527e65e81cabc912a2816895efd46fb28bbd45e50327cd7e5d01ba88bcb03
 DIST T-COFFEE_distribution_Version_8.69.tar.gz 4112765 RMD160 5a2e7e089a5d2cc536247b9b26c7b6c216d7ef03 SHA1 3db6557c40587dba005179c98cc5b63b6dca9e44 SHA256 f346376bf341ce30f30f8c077820da466bed3e560c02d0ddd1a992381855d0f5
 DIST T-COFFEE_distribution_Version_8.93.tar.gz 4129848 RMD160 e88c519f19755017f1ade2abb2d9f04dc59364b6 SHA1 1ac365f0e0829a3e6c12ad99f36e0d5a5c9e021a SHA256 a2567d01d683f3e7faad72cc0d4e1749fec97cb64092db50f3d6696f523d8f80
-EBUILD t-coffee-5.65.ebuild 1999 RMD160 7ae18da2d689343547258b54f1de66f289f47114 SHA1 6518aae4c5e8b9bc55eaff6c0e763ae22995c393 SHA256 25d353182a9e946df52ad7dea404800a169067c77441c8d2456042b0cbea4d25
-EBUILD t-coffee-7.54.ebuild 1857 RMD160 ee23165c9f4e40b608c960d6c14886b1a680a4e6 SHA1 eb77681d7a1facb7fdab7c0ca45fe6dc02b99e61 SHA256 3da47ef23cf41088177fe5c8b90f96627c0f29f777145e79bf28b7aab618f372
+EBUILD t-coffee-5.65.ebuild 2008 RMD160 3ad0852e9425e1717be2e3a24730bef64dc26105 SHA1 d9b116840eb5f22c96c4e0a30ca83aad9746b26c SHA256 ad91bc539fcd25f74425c91a8137ff0c21d7e0ffc20add65b748b0a519674877
 EBUILD t-coffee-8.14.ebuild 1863 RMD160 9dcfe5c6bbd1cf21d9f0ed0c9bae2ffab4816b02 SHA1 67cfd906a72e472fbf83156d0d3ee5371ad8b6b1 SHA256 75e3382c765661e1aca0900fc389a04999b72c08ee650950d5c3c98d3d21378f
 EBUILD t-coffee-8.69.ebuild 1912 RMD160 12709f2c5d029c95218ad9e365c31460e742e5aa SHA1 e4b058868af8ee3337be9fb330a98320e2d19f5f SHA256 1aaafe514f188dbdabdc9cd88150ba4bde3c1711daef5a76d429d30426522c8f
 EBUILD t-coffee-8.93.ebuild 1898 RMD160 741c4b5b18ca69c3065866f574c8b864762cd9c5 SHA1 ea965774e95c94d748330a76c96bb14f70d910d0 SHA256 3c77e829bdb7bf982f2ac2f106d458351c88881fddccf961085bd342eedc1e0e
-MISC ChangeLog 5800 RMD160 012ac926a7c8730bd17405694811801ec4a1a00a SHA1 95627dadea149f350dc6acf309ff9333ecb3fb87 SHA256 2a4b3ed77d0ebe9c8ae2c0a5d535ebd65640a4c93a78372f11525aac26a3e8e3
+MISC ChangeLog 5900 RMD160 aeb2eb5f6c53a35c8340114ece4fdc5c93e77666 SHA1 655b1d3290e28a77711b26a8e3087e14beff30a7 SHA256 f2c416766f5046a78a373d994ae2c19841ca4af08dfb75aebed2eb45f3c26098
 MISC metadata.xml 760 RMD160 b9b95d31917ca092fbc88aaf871ffc6c22746860 SHA1 ee9d60b1947e1fb1542488003713ec1bcf3f3b71 SHA256 9d60cbec2e12219f15e311a1e8cb694b77fd7897c98186be3012f815c0f7bd12
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0.16 (GNU/Linux)
 
-iEYEARECAAYFAkyoZQEACgkQgAnW8HDreRZyPQCgx+9CndA5zPS5Kxbj8d+L56SM
-RXsAoNCeUnLCyBElGNjEfJrLOleJ6zNR
-=vTA2
+iEYEARECAAYFAkyoZ5MACgkQgAnW8HDreRbaNQCePnVMp1/f86HEmsfFyrenfadx
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diff --git a/sci-biology/t-coffee/t-coffee-5.65.ebuild b/sci-biology/t-coffee/t-coffee-5.65.ebuild
index 950ae7c52d33..bcd73aaf6829 100644
--- a/sci-biology/t-coffee/t-coffee-5.65.ebuild
+++ b/sci-biology/t-coffee/t-coffee-5.65.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2008 Gentoo Foundation
+# Copyright 1999-2010 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild,v 1.4 2008/07/14 17:01:42 nixnut Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild,v 1.5 2010/10/03 11:22:54 jlec Exp $
 
 inherit toolchain-funcs flag-o-matic
 
@@ -15,7 +15,8 @@ KEYWORDS="amd64 ppc x86"
 
 RESTRICT="mirror"
 
-DEPEND="sci-biology/clustalw"
+DEPEND=""
+RDEPEND="sci-biology/clustalw"
 
 TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
 S="${TCDIR}/t_coffee_source"
diff --git a/sci-biology/t-coffee/t-coffee-7.54.ebuild b/sci-biology/t-coffee/t-coffee-7.54.ebuild
deleted file mode 100644
index 3dd596d3185b..000000000000
--- a/sci-biology/t-coffee/t-coffee-7.54.ebuild
+++ /dev/null
@@ -1,58 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-7.54.ebuild,v 1.1 2009/03/01 17:15:20 patrick Exp $
-
-inherit toolchain-funcs flag-o-matic
-
-DESCRIPTION="A multiple sequence alignment package"
-LICENSE="GPL-2"
-HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
-SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
-
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~ppc ~x86"
-
-DEPEND="sci-biology/clustalw"
-RDEPEND="${DEPEND}"
-
-TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
-S="${TCDIR}/t_coffee_source"
-
-die_compile() {
-	echo
-	eerror "If you experience an internal compiler error (consult the above"
-	eerror "messages), try compiling t-coffee using very modest compiler flags."
-	eerror "See bug #114745 on the Gentoo Bugzilla for more details."
-	die "Compilation failed"
-}
-
-src_compile() {
-	[[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time
-	[[ $(gcc-version) == "4.1" ]] && append-flags -fno-unit-at-a-time
-	CC="$(tc-getCC)" CFLAGS="${CFLAGS}" emake || die_compile
-}
-
-src_install() {
-	dobin t_coffee || die "Failed to install program."
-
-	insinto /usr/share/${PN}/lib/html
-	doins "${TCDIR}"/html/* \
-		|| die "Failed to install Web interface files."
-
-	cd "${TCDIR}"/doc
-	dodoc aln_compare.doc.txt seq_reformat.doc.txt \
-			t_coffee_technical.txt t_coffee_tutorial.txt \
-			|| die "Failed to install text documentation."
-
-	dohtml t_coffee_technical.htm t_coffee_tutorial.htm \
-		|| die "Failed to install HTML documentation."
-
-	insinto /usr/share/doc/${PF}
-	doins t_coffee_technical.doc t_coffee_tutorial.doc \
-		|| die "Failed to install DOC documentation."
-
-	insinto /usr/share/${PN}/example
-	doins "${TCDIR}"/example/* \
-		|| die "Failed to install example files."
-}