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authorOlivier Fisette <ribosome@gentoo.org>2007-07-18 02:40:41 +0000
committerOlivier Fisette <ribosome@gentoo.org>2007-07-18 02:40:41 +0000
commit7a0e7c1722805a45dba1ecdb2d49066d6ed2f1a0 (patch)
tree4be83c86d3ddb223027859e45415c178812d245f /sci-biology
parentMarked stable on amd64. (diff)
downloadhistorical-7a0e7c1722805a45dba1ecdb2d49066d6ed2f1a0.tar.gz
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We still need an AMD64 ebuild for EMBOSS 4.0.0 (my mistake).
Package-Manager: portage-2.1.2.9
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/embassy-mse/ChangeLog6
-rw-r--r--sci-biology/embassy-mse/Manifest15
-rw-r--r--sci-biology/embassy-mse/embassy-mse-1.0.0-r4.ebuild21
-rw-r--r--sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0-r46
-rw-r--r--sci-biology/embassy/Manifest15
5 files changed, 54 insertions, 9 deletions
diff --git a/sci-biology/embassy-mse/ChangeLog b/sci-biology/embassy-mse/ChangeLog
index 6fdaa7b16ed1..05ad9cebe103 100644
--- a/sci-biology/embassy-mse/ChangeLog
+++ b/sci-biology/embassy-mse/ChangeLog
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/embassy-mse
# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mse/ChangeLog,v 1.26 2007/07/18 01:47:45 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mse/ChangeLog,v 1.27 2007/07/18 02:40:41 ribosome Exp $
+
+ 18 Jul 2007; Olivier Fisette <ribosome@gentoo.org>
+ +embassy-mse-1.0.0-r4.ebuild:
+ We still need an AMD64 ebuild for EMBOSS 4.0.0 (my mistake).
18 Jul 2007; Olivier Fisette <ribosome@gentoo.org>
-embassy-mse-1.0.0-r4.ebuild:
diff --git a/sci-biology/embassy-mse/Manifest b/sci-biology/embassy-mse/Manifest
index 611b7dd8d3ca..9fb6860aa33c 100644
--- a/sci-biology/embassy-mse/Manifest
+++ b/sci-biology/embassy-mse/Manifest
@@ -6,14 +6,18 @@ EBUILD embassy-mse-1.0.0-r3.ebuild 582 RMD160 c5447ef4d9886fcff90c8a7ba5e9bf7f8f
MD5 e5350a5bd67bc450ebf8398ae24f3203 embassy-mse-1.0.0-r3.ebuild 582
RMD160 c5447ef4d9886fcff90c8a7ba5e9bf7f8f0e8f00 embassy-mse-1.0.0-r3.ebuild 582
SHA256 b53ae6dfbf1aef00dfa98174e294e214ffa4b01a4f7c4f0a586429978bde83ca embassy-mse-1.0.0-r3.ebuild 582
+EBUILD embassy-mse-1.0.0-r4.ebuild 738 RMD160 eacbbfc155a1c102a27fe7b8c3784a741746afe6 SHA1 eb2277c2290ea958a3c71434db929aaa34da6759 SHA256 bd5d95b9545081cb1e071a9cef8c3f5b6ecb4a7a64bea9fe41fca0691187aa64
+MD5 90f4deb9e977960b379ca8e8553d46d9 embassy-mse-1.0.0-r4.ebuild 738
+RMD160 eacbbfc155a1c102a27fe7b8c3784a741746afe6 embassy-mse-1.0.0-r4.ebuild 738
+SHA256 bd5d95b9545081cb1e071a9cef8c3f5b6ecb4a7a64bea9fe41fca0691187aa64 embassy-mse-1.0.0-r4.ebuild 738
EBUILD embassy-mse-1.0.0-r5.ebuild 732 RMD160 44cb0f71e8345eaad71ce31e4f7b0a051a0231e6 SHA1 750a61639cceac29cc0662dee4f5fc06d35cbdc3 SHA256 d86ad721a367c5f8913085c4b8428fae628293e0c36d979c643052ae2206f567
MD5 316391140bdc549398f4755b94d22ee5 embassy-mse-1.0.0-r5.ebuild 732
RMD160 44cb0f71e8345eaad71ce31e4f7b0a051a0231e6 embassy-mse-1.0.0-r5.ebuild 732
SHA256 d86ad721a367c5f8913085c4b8428fae628293e0c36d979c643052ae2206f567 embassy-mse-1.0.0-r5.ebuild 732
-MISC ChangeLog 3847 RMD160 ad847f6f8b5cd76f8f0fe83a8fc0818720bab57d SHA1 612176a1e2930c55a6f60344754bb1cce35e904b SHA256 d9cbc8b8c59fb67d83dbaf88e11b21cfa662070c30664177f5f5937f2eb16550
-MD5 7462687ae2dca22dd6b39e9cc22c2859 ChangeLog 3847
-RMD160 ad847f6f8b5cd76f8f0fe83a8fc0818720bab57d ChangeLog 3847
-SHA256 d9cbc8b8c59fb67d83dbaf88e11b21cfa662070c30664177f5f5937f2eb16550 ChangeLog 3847
+MISC ChangeLog 3996 RMD160 704f2381a7f075bac31afbea07bb9adbe293ac17 SHA1 74df90b60a5b79a3761da6310f98e10b0eafb678 SHA256 b528f07e03407bcd246031e64529c6ca7cf965c15d8f272c04b3da2a08fc8e57
+MD5 ae4d74363a8436299542cdc3521a9bd0 ChangeLog 3996
+RMD160 704f2381a7f075bac31afbea07bb9adbe293ac17 ChangeLog 3996
+SHA256 b528f07e03407bcd246031e64529c6ca7cf965c15d8f272c04b3da2a08fc8e57 ChangeLog 3996
MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
@@ -21,6 +25,9 @@ SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata
MD5 333db965293960a1c09d13301dc60ccf files/digest-embassy-mse-1.0.0-r3 515
RMD160 c6eeff0d6c1f940bfe8f8e78c5b00b29258fa7e6 files/digest-embassy-mse-1.0.0-r3 515
SHA256 98127a6911bddf00ab10f36de745606179061592e7e90cbb4a19f1bb41e1f386 files/digest-embassy-mse-1.0.0-r3 515
+MD5 333db965293960a1c09d13301dc60ccf files/digest-embassy-mse-1.0.0-r4 515
+RMD160 c6eeff0d6c1f940bfe8f8e78c5b00b29258fa7e6 files/digest-embassy-mse-1.0.0-r4 515
+SHA256 98127a6911bddf00ab10f36de745606179061592e7e90cbb4a19f1bb41e1f386 files/digest-embassy-mse-1.0.0-r4 515
MD5 e4f4a671fe000c3bf9ffcce059e75792 files/digest-embassy-mse-1.0.0-r5 515
RMD160 12579b46237a21728ff87b6d463235f5e9bd5989 files/digest-embassy-mse-1.0.0-r5 515
SHA256 83201d328fb33304017f48c316edcb611b171026931088891f9f8bcac12a02ec files/digest-embassy-mse-1.0.0-r5 515
diff --git a/sci-biology/embassy-mse/embassy-mse-1.0.0-r4.ebuild b/sci-biology/embassy-mse/embassy-mse-1.0.0-r4.ebuild
new file mode 100644
index 000000000000..d2c825be2290
--- /dev/null
+++ b/sci-biology/embassy-mse/embassy-mse-1.0.0-r4.ebuild
@@ -0,0 +1,21 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mse/embassy-mse-1.0.0-r4.ebuild,v 1.4 2007/07/18 02:40:41 ribosome Exp $
+
+EBOV="4.0.0"
+
+inherit embassy
+
+DESCRIPTION="EMBOSS integrated version of MSE - Multiple Sequence Screen Editor"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+ mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
+
+src_install() {
+ sed -e "s:libdir = \${exec_prefix}/lib:libdir = \${exec_prefix}/$(get_libdir):g" \
+ -i ckit/Makefile || die "Failed patching Makefile."
+ embassy_src_install
+ insinto /usr/include/emboss/mse
+ doins h/*.h
+}
diff --git a/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0-r4 b/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0-r4
new file mode 100644
index 000000000000..de632a1b05dc
--- /dev/null
+++ b/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0-r4
@@ -0,0 +1,6 @@
+MD5 2ef912cfde4903129f2424d23d6da0d2 EMBOSS-4.0.0.tar.gz 17651607
+RMD160 5b29ac2946a1315928581bf0e40a0f6b5023c599 EMBOSS-4.0.0.tar.gz 17651607
+SHA256 bbfd127adc064a5211542f3b5400cbb13c7f74d9171fd16b8531cee9fd11b231 EMBOSS-4.0.0.tar.gz 17651607
+MD5 b5f3f4ed1e74c6cf7a7d57d398a7634b embassy-4.0.0-mse-1.0.0.tar.gz 428940
+RMD160 9f4d85aed5b27ecb6e6b5f814c46fe5edfc6c66c embassy-4.0.0-mse-1.0.0.tar.gz 428940
+SHA256 9168315bcfb1a658f298891204b8b31f8faa7986e24eb513283c15cf61f8a01a embassy-4.0.0-mse-1.0.0.tar.gz 428940
diff --git a/sci-biology/embassy/Manifest b/sci-biology/embassy/Manifest
index 768a869ef18a..73e118cab63f 100644
--- a/sci-biology/embassy/Manifest
+++ b/sci-biology/embassy/Manifest
@@ -2,10 +2,14 @@ EBUILD embassy-4.0.0.ebuild 1459 RMD160 2c19d126ef75a04282ad8ec22a541ddaf36310e2
MD5 2d2e08794489ff775f5b1d4a0db7179e embassy-4.0.0.ebuild 1459
RMD160 2c19d126ef75a04282ad8ec22a541ddaf36310e2 embassy-4.0.0.ebuild 1459
SHA256 69851568a714d9ce2092b0d25ad404e33fd40992c89d5f18252fc35ad2a13dc3 embassy-4.0.0.ebuild 1459
-MISC ChangeLog 3481 RMD160 960f49217c0ef0a56c5ac342f8c2489f902597e7 SHA1 0c460eaa3dead2372d11d5287ad7974ee7b24584 SHA256 7a03117bc73506b28350db0f61ca6f2ce1b984eb4bf00a51bad14caab29c2b25
-MD5 83aa5e7440d5dd3f4425b3ce0c7f9a22 ChangeLog 3481
-RMD160 960f49217c0ef0a56c5ac342f8c2489f902597e7 ChangeLog 3481
-SHA256 7a03117bc73506b28350db0f61ca6f2ce1b984eb4bf00a51bad14caab29c2b25 ChangeLog 3481
+EBUILD embassy-5.0.0.ebuild 1043 RMD160 0ae0c808021ebe514cc5acca266285f5e6b8954e SHA1 688dd9120823267bef2b761d47c15bf42216dbc2 SHA256 5b6a64407ef37b3051a5be2b00cd2020248717cf4cfb2d8752d23d888d514a1b
+MD5 960158e3016e4d4308b2def88fd2c87a embassy-5.0.0.ebuild 1043
+RMD160 0ae0c808021ebe514cc5acca266285f5e6b8954e embassy-5.0.0.ebuild 1043
+SHA256 5b6a64407ef37b3051a5be2b00cd2020248717cf4cfb2d8752d23d888d514a1b embassy-5.0.0.ebuild 1043
+MISC ChangeLog 3659 RMD160 516a07c3a847338908663cbe93b14cd1cddf62f9 SHA1 55b3ce6c7b9ebc4421d2d657f8d72aaa33af3250 SHA256 ddf5c57ce40f5213efd37ec425e2f5bc667251e1586ac7d940d585510fadde49
+MD5 edfbfb12c3bee2a9e568b3e439c145b7 ChangeLog 3659
+RMD160 516a07c3a847338908663cbe93b14cd1cddf62f9 ChangeLog 3659
+SHA256 ddf5c57ce40f5213efd37ec425e2f5bc667251e1586ac7d940d585510fadde49 ChangeLog 3659
MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
@@ -13,3 +17,6 @@ SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata
MD5 d41d8cd98f00b204e9800998ecf8427e files/digest-embassy-4.0.0 0
RMD160 9c1185a5c5e9fc54612808977ee8f548b2258d31 files/digest-embassy-4.0.0 0
SHA256 e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855 files/digest-embassy-4.0.0 0
+MD5 d41d8cd98f00b204e9800998ecf8427e files/digest-embassy-5.0.0 0
+RMD160 9c1185a5c5e9fc54612808977ee8f548b2258d31 files/digest-embassy-5.0.0 0
+SHA256 e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855 files/digest-embassy-5.0.0 0