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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-02-27 00:16:15 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-02-27 00:16:15 +0000 |
| commit | 6098bce924b575ccca88043f370dce39f4c16f7a (patch) | |
| tree | 0cec104cdc29678d77c078617e3709626c59dbbf /sci-biology | |
| parent | New license OSL-2.1 for package sci-biology/repeatmasker (diff) | |
| download | historical-6098bce924b575ccca88043f370dce39f4c16f7a.tar.gz historical-6098bce924b575ccca88043f370dce39f4c16f7a.tar.bz2 historical-6098bce924b575ccca88043f370dce39f4c16f7a.zip | |
Import from Science overlay, bug 114096
Package-Manager: portage-2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/repeatmasker/ChangeLog | 24 | ||||
| -rw-r--r-- | sci-biology/repeatmasker/metadata.xml | 5 | ||||
| -rw-r--r-- | sci-biology/repeatmasker/repeatmasker-3.2.7.ebuild | 54 |
3 files changed, 83 insertions, 0 deletions
diff --git a/sci-biology/repeatmasker/ChangeLog b/sci-biology/repeatmasker/ChangeLog new file mode 100644 index 000000000000..96d54c647caf --- /dev/null +++ b/sci-biology/repeatmasker/ChangeLog @@ -0,0 +1,24 @@ +# ChangeLog for sci-biology/repeatmasker +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/repeatmasker/ChangeLog,v 1.1 2009/02/27 00:16:15 weaver Exp $ + +*repeatmasker-3.2.7 (26 Feb 2009) + + 26 Feb 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml, + +repeatmasker-3.2.7.ebuild: + Import from Science overlay, bug 114096 + + 19 Feb 2009; weaver <weaver@gentoo.org> ChangeLog: + Version bump + + 08 Jul 2008; weaver <weaver@gentoo.org> +repeatmasker-3.2.5.ebuild: + Version bump + + 27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> + +repeatmasker-3.1.7.ebuild: + Mass import from sunrise + + 20 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +repeatmasker-3.1.7.ebuild, + +metadata.xml: + new package (bug 114096) + diff --git a/sci-biology/repeatmasker/metadata.xml b/sci-biology/repeatmasker/metadata.xml new file mode 100644 index 000000000000..7e3286984488 --- /dev/null +++ b/sci-biology/repeatmasker/metadata.xml @@ -0,0 +1,5 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>maintainer-wanted</herd> +</pkgmetadata> diff --git a/sci-biology/repeatmasker/repeatmasker-3.2.7.ebuild b/sci-biology/repeatmasker/repeatmasker-3.2.7.ebuild new file mode 100644 index 000000000000..5f30e00e0c23 --- /dev/null +++ b/sci-biology/repeatmasker/repeatmasker-3.2.7.ebuild @@ -0,0 +1,54 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/repeatmasker/repeatmasker-3.2.7.ebuild,v 1.1 2009/02/27 00:16:15 weaver Exp $ + +inherit versionator + +MY_PV=$(replace_all_version_separators '-') + +DESCRIPTION="Screen DNA sequences for interspersed repeats and low complexity DNA" +HOMEPAGE="http://repeatmasker.org/" +SRC_URI="http://www.repeatmasker.org/RepeatMasker-open-${MY_PV}.tar.gz" + +LICENSE="OSL-2.1" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="" +RDEPEND="sci-biology/phrap + sci-biology/trf + >=sci-biology/repeatmasker-libraries-20090120" + +S="${WORKDIR}/RepeatMasker" + +src_compile() { + sed -i -e 's/system( "clear" );//' \ + -e 's|> \($rmLocation/Libraries/RepeatMasker.lib\)|> '${D}'/\1|' "${S}/configure" || die + echo " +env +/usr/share/${PN} +/usr/bin +1 +/usr/bin +Y +4" | "${S}/configure" || die "configure failed" + sed -i -e 's|use lib $FindBin::RealBin;|use lib "/usr/share/'${PN}'/lib";|' \ + -e 's|".*\(taxonomy.dat\)"|"/usr/share/'${PN}'/\1"|' \ + -e '/$REPEATMASKER_DIR/ s|$FindBin::RealBin|/usr/share/'${PN}'|' \ + "${S}"/{DateRepeats,ProcessRepeats,RepeatMasker,DupMasker,RepeatProteinMask,RepeatMaskerConfig.pm,Taxonomy.pm} || die +} + +src_install() { + dobin DateRepeats ProcessRepeats RepeatMasker DupMasker RepeatProteinMask + + dodir /usr/share/${PN}/lib + insinto /usr/share/${PN}/lib + doins "${S}"/*.pm + + insinto /usr/share/${PN} + doins -r util Matrices Libraries taxonomy.dat + keepdir /usr/share/${PN}/Libraries + + dodoc README INSTALL *.help +} |