Use system csh instead of shebang

Package-Manager: portage-2.1.9.24/cvs/Linux x86_64

4 files changed, 25 insertions, 11 deletions

diff --git a/sci-biology/ncbi-tools/ChangeLog b/sci-biology/ncbi-tools/ChangeLog
index 9e6e193665c6..0243095b3e28 100644
--- a/sci-biology/ncbi-tools/ChangeLog
+++ b/sci-biology/ncbi-tools/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/ncbi-tools
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.80 2010/10/10 21:22:56 ulm Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.81 2010/11/15 21:03:06 jlec Exp $
+
+  15 Nov 2010; Justin Lecher <jlec@gentoo.org>
+  ncbi-tools-20090809-r2.ebuild, ncbi-tools-20100808.ebuild:
+  Use system csh instead of shebang
 
   10 Oct 2010; Ulrich Mueller <ulm@gentoo.org> ncbi-tools-20080302.ebuild,
   ncbi-tools-20090809.ebuild, ncbi-tools-20090809-r2.ebuild,
diff --git a/sci-biology/ncbi-tools/Manifest b/sci-biology/ncbi-tools/Manifest
index f351d0989363..234b2b1e1cac 100644
--- a/sci-biology/ncbi-tools/Manifest
+++ b/sci-biology/ncbi-tools/Manifest
@@ -11,15 +11,15 @@ DIST ncbi-tools-20090809.tar.gz 64646971 RMD160 a1482a252647b2ea878ac9b08093cfd4
 DIST ncbi-tools-20100808.tar.gz 65119702 RMD160 24d5f9f09869eacd01db2ff793f29a7c938e64ed SHA1 ae1e1e780c52ba9da539f1d3d50418d36e9fd1e2 SHA256 5302481373b86e5d9fc41cc6b405f63000d56cc2ee9fc0ffa5aeb9e611c45ff0
 DIST ncbi-tools-sdk-doc.tar.bz2 263568 RMD160 f9c4d610c2535ec2b4afae6ecef065fd5746910b SHA1 6fd259b1fc75684db43bd817fc4720e92f56e81c SHA256 352ec02e527f24d03bafb7d40b31c98e0a6f931bed34c4933c5f7153b8034cb2
 EBUILD ncbi-tools-20080302.ebuild 7158 RMD160 7427a98dadc2c9d1d9b4f3688bc94dbddcabb26c SHA1 2c7c54c281f39973366fbe81cb83dcbbe0557a7f SHA256 a9dced5a7a6c347b0302f40ac278a566b48956e9e8654c35ed2d1826acfc74c7
-EBUILD ncbi-tools-20090809-r2.ebuild 6415 RMD160 cbf1ccf3095f8ae0b6e8dd8201b92d2fef1222aa SHA1 d88bf8c2561e7c9e51b341a68ccee84ae6c1b374 SHA256 3dbaf4d92c0e1dc20d894dac9e397d659649b23efeaac7ab5ec4ccebb95426d3
+EBUILD ncbi-tools-20090809-r2.ebuild 6532 RMD160 7f5e4ead461c5cb7461f5c6c35fc6dd54e49d52f SHA1 17ebb2f0a09abda877a49f4f92fe1804fe70648b SHA256 72df8b1955bab3c4896323675b4de4617ca00daf24d044f3de73d38d64187dd6
 EBUILD ncbi-tools-20090809.ebuild 6132 RMD160 142da7c23b3aadf119c99e63b08d3feb41baf2e2 SHA1 b51624b2fa20b9a85efce7f52887c6435e7c2d81 SHA256 5b2f2e55d63e35b430d6d843aa14d7348098f7de74bb2c8ee038cf360c724041
-EBUILD ncbi-tools-20100808.ebuild 6735 RMD160 679b9b23f802d1b7b158dcbc7c3db3dabde876b1 SHA1 d5c389812ff4609eac91db045d69f767a242ae32 SHA256 36626e7470d347386249ee68a7569862d00ceb45b13010e99c3619cb27cbd580
-MISC ChangeLog 16197 RMD160 2b4f07fa1920f733459167e0d5e32c56f47d870b SHA1 e302dc2b503e3c03bedede647bdba63c8ee650e9 SHA256 517d5c44040bcbeea38dd50e871c3284626ce2ceb042030f80c22f25cb187943
+EBUILD ncbi-tools-20100808.ebuild 6852 RMD160 a5956fcbcc18ac9f5fefe31ca3324606405cac0e SHA1 031e6d3cdf4bf96c8d282019710c130228063357 SHA256 f9ffe0be72384986a3ac4c9de1b6ddd84d616d3b20370e65e5710a51a71ad7d3
+MISC ChangeLog 16343 RMD160 016207f4df252b1669419eb8c405f3a36e5a1653 SHA1 7d8932ef26fcd5932f66694aee1878f973f226b5 SHA256 e0bb82f4c0cd1ce91e3435ae995ae5aa73f6c2fc9d1ac590df68be5cffec2b1d
 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
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diff --git a/sci-biology/ncbi-tools/ncbi-tools-20090809-r2.ebuild b/sci-biology/ncbi-tools/ncbi-tools-20090809-r2.ebuild
index 4669db0981d4..07b6f1392b4d 100644
--- a/sci-biology/ncbi-tools/ncbi-tools-20090809-r2.ebuild
+++ b/sci-biology/ncbi-tools/ncbi-tools-20090809-r2.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2010 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20090809-r2.ebuild,v 1.2 2010/10/10 21:22:56 ulm Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20090809-r2.ebuild,v 1.3 2010/11/15 21:03:06 jlec Exp $
 
 EAPI="3"
 
@@ -108,12 +108,17 @@ src_prepare() {
 
 	# We use dynamic libraries
 	sed -i -e "s/-Wl,-Bstatic//" *linux*.ncbi.mk || die
+
+	sed \
+		-re "s:/usr(/bin/.*sh):\1:g" \
+		-e "s:(/bin/.*sh):${EPREFIX}\1:g" \
+		-i $(find ${S} -type f) || die
 }
 
 src_compile() {
 	export EXTRA_VIB
 	cd "${WORKDIR}"
-	ncbi/make/makedis.csh || die
+	csh ncbi/make/makedis.csh || die
 	mkdir "${S}"/cgi
 	mkdir "${S}"/real
 	mv "${S}"/bin/*.cgi "${S}"/cgi || die
diff --git a/sci-biology/ncbi-tools/ncbi-tools-20100808.ebuild b/sci-biology/ncbi-tools/ncbi-tools-20100808.ebuild
index 5acb20f98efc..683bf65c9010 100644
--- a/sci-biology/ncbi-tools/ncbi-tools-20100808.ebuild
+++ b/sci-biology/ncbi-tools/ncbi-tools-20100808.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2010 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20100808.ebuild,v 1.2 2010/10/10 21:22:56 ulm Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20100808.ebuild,v 1.3 2010/11/15 21:03:06 jlec Exp $
 
 EAPI="3"
 
@@ -108,12 +108,17 @@ src_prepare() {
 
 	# We use dynamic libraries
 	sed -i -e "s/-Wl,-Bstatic//" *linux*.ncbi.mk || die
+
+	sed \
+		-re "s:/usr(/bin/.*sh):\1:g" \
+		-e "s:(/bin/.*sh):${EPREFIX}\1:g" \
+		-i $(find ${S} -type f) || die
 }
 
 src_compile() {
 	export EXTRA_VIB
 	cd "${WORKDIR}"
-	ncbi/make/makedis.csh || die
+	csh ncbi/make/makedis.csh || die
 	mkdir "${S}"/cgi
 	mkdir "${S}"/real
 	mv "${S}"/bin/*.cgi "${S}"/cgi || die