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authorOlivier Fisette <ribosome@gentoo.org>2006-04-20 01:09:45 +0000
committerOlivier Fisette <ribosome@gentoo.org>2006-04-20 01:09:45 +0000
commit2de224c40636c5ca43074f7abff40d0bd425ee0f (patch)
tree86a9711819c6068e07f5b82c7c3bc4b44637854c /sci-biology
parentVersion bump and closing bug #128183. (diff)
downloadhistorical-2de224c40636c5ca43074f7abff40d0bd425ee0f.tar.gz
historical-2de224c40636c5ca43074f7abff40d0bd425ee0f.tar.bz2
historical-2de224c40636c5ca43074f7abff40d0bd425ee0f.zip
Removed old revision
Package-Manager: portage-2.0.54
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/emboss/ChangeLog5
-rw-r--r--sci-biology/emboss/Manifest20
-rw-r--r--sci-biology/emboss/emboss-3.0.0.ebuild60
-rw-r--r--sci-biology/emboss/files/digest-emboss-3.0.01
4 files changed, 5 insertions, 81 deletions
diff --git a/sci-biology/emboss/ChangeLog b/sci-biology/emboss/ChangeLog
index 6d2282c06267..a0ea73cb44fd 100644
--- a/sci-biology/emboss/ChangeLog
+++ b/sci-biology/emboss/ChangeLog
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/emboss
# Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.32 2006/04/08 10:32:30 blubb Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.33 2006/04/20 01:09:45 ribosome Exp $
+
+ 20 Apr 2006; Olivier Fisette <ribosome@gentoo.org> -emboss-3.0.0.ebuild:
+ Removed old revision.
08 Apr 2006; Simon Stelling <blubb@gentoo.org> emboss-3.0.0-r1.ebuild:
stable on amd64
diff --git a/sci-biology/emboss/Manifest b/sci-biology/emboss/Manifest
index 0b870b6189db..eb84d75682de 100644
--- a/sci-biology/emboss/Manifest
+++ b/sci-biology/emboss/Manifest
@@ -1,24 +1,6 @@
-MD5 f3e523c77235fd30e2fd19028e0bc8ec ChangeLog 6384
-RMD160 f8b87e2d04a485dd64266fbd1b4e8f2db1d23fc4 ChangeLog 6384
-SHA256 0dac3b3dc872a28305a51173b6dd7aae599fb01d2eb5ca74d1e7a5e80be259a4 ChangeLog 6384
+MD5 95d37ca94e9f151baa361c99256be065 ChangeLog 6487
MD5 4194379dc2f45d117ac8eba69934c27d emboss-3.0.0-r1.ebuild 2948
-RMD160 f11fdb1915a5d2617ec7fac90eac23a28a995d5b emboss-3.0.0-r1.ebuild 2948
-SHA256 5746e17de8b1b4c0523b4cf04e721312b4890299311393b076d5551e85cf87d7 emboss-3.0.0-r1.ebuild 2948
-MD5 ecb49ecef824e368a8ad751b90f19186 emboss-3.0.0.ebuild 1854
-RMD160 61caa32788eb59c1d207931d5c499a4016e79be8 emboss-3.0.0.ebuild 1854
-SHA256 6d313c87e265580ceb2af86c30851763cc2efec96f1315dca4b0d5eaa6c721d9 emboss-3.0.0.ebuild 1854
MD5 ef2dfa3d13837026f59c0cf5f04f67c5 files/22emboss-r1 110
-RMD160 aa416dbfca66cc7822ed162122addadde2756c66 files/22emboss-r1 110
-SHA256 cf3bd3b8d2638a0cd14e57839033d63c855114a0e12883bbc7a5106b0cfc01ad files/22emboss-r1 110
MD5 615888722f8d6a0c918f936e0cc1cfcd files/README.Gentoo 1326
-RMD160 bfaa4d7d1218d3bd4ea58d54d000da7f58b6bca6 files/README.Gentoo 1326
-SHA256 33b517b977cc85824847bd6cf4113489a5554fb014f1a6b1d22d6f80c3487e9f files/README.Gentoo 1326
-MD5 84fbde044d74a82c084fa22d5d59ae8e files/digest-emboss-3.0.0 66
-RMD160 bacfaf49534b5313c65e3969685f9867550c34b0 files/digest-emboss-3.0.0 66
-SHA256 bdca0dd643312ce9f1a2bbeec7c2098c12ad1427ce475be0d73270a4b4eee891 files/digest-emboss-3.0.0 66
MD5 84fbde044d74a82c084fa22d5d59ae8e files/digest-emboss-3.0.0-r1 66
-RMD160 bacfaf49534b5313c65e3969685f9867550c34b0 files/digest-emboss-3.0.0-r1 66
-SHA256 bdca0dd643312ce9f1a2bbeec7c2098c12ad1427ce475be0d73270a4b4eee891 files/digest-emboss-3.0.0-r1 66
MD5 6051afb1f26bf343082490327784b958 metadata.xml 1013
-RMD160 ba2d432b51362211447beda69549987694cf310f metadata.xml 1013
-SHA256 5f7476f5baa4784437a557d03e600b491ef44b12abadffb513a59b79993a0047 metadata.xml 1013
diff --git a/sci-biology/emboss/emboss-3.0.0.ebuild b/sci-biology/emboss/emboss-3.0.0.ebuild
deleted file mode 100644
index 5987a6788705..000000000000
--- a/sci-biology/emboss/emboss-3.0.0.ebuild
+++ /dev/null
@@ -1,60 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/emboss-3.0.0.ebuild,v 1.9 2005/12/14 03:28:52 spyderous Exp $
-
-DESCRIPTION="The European Molecular Biology Open Software Suite - A sequence analysis package"
-HOMEPAGE="http://emboss.sourceforge.net/"
-SRC_URI="ftp://${PN}.open-bio.org/pub/EMBOSS/EMBOSS-${PV}.tar.gz"
-LICENSE="GPL-2 LGPL-2"
-
-SLOT="0"
-KEYWORDS="amd64 ppc ppc-macos ppc64 x86"
-IUSE="X png minimal"
-
-DEPEND="X? ( || ( x11-libs/libXt virtual/x11 ) )
- png? (
- sys-libs/zlib
- media-libs/libpng
- >=media-libs/gd-1.8
- )
- !minimal? (
- sci-biology/primer3
- sci-biology/clustalw
- )"
-
-PDEPEND="!minimal? (
- sci-biology/aaindex
- sci-biology/cutg
- sci-biology/prints
- >=sci-biology/prosite-19.7
- sci-biology/rebase
- sci-biology/transfac
- )"
-
-S=${WORKDIR}/EMBOSS-${PV}
-
-src_compile() {
- EXTRA_CONF="--includedir=${D}/usr/include/emboss"
- ! use X && EXTRA_CONF="${EXTRA_CONF} --without-x"
- ! use png && EXTRA_CONF="${EXTRA_CONF} --without-pngdriver"
-
- econf ${EXTRA_CONF} || die
- # Do not install the JEMBOSS component (the --without-java configure option
- # does not work). JEMBOSS will be available as a separate package.
- sed -i -e 's/SUBDIRS = plplot ajax nucleus emboss test doc jemboss/SUBDIRS = plplot ajax nucleus emboss test doc/' Makefile || die
- emake || die
-}
-
-src_install() {
- einstall || die
- dodoc AUTHORS ChangeLog FAQ NEWS README THANKS
-
- # Install env file for setting libplplot and acd files path.
- insinto /etc/env.d
- newins ${FILESDIR}/22emboss-r1 22emboss
-
- # Symlink preinstalled docs to /usr/share/doc.
- dosym /usr/share/EMBOSS/doc/manuals /usr/share/doc/${PF}/manuals
- dosym /usr/share/EMBOSS/doc/programs /usr/share/doc/${PF}/programs
- dosym /usr/share/EMBOSS/doc/tutorials /usr/share/doc/${PF}/tutorials
-}
diff --git a/sci-biology/emboss/files/digest-emboss-3.0.0 b/sci-biology/emboss/files/digest-emboss-3.0.0
deleted file mode 100644
index 5dfd3480a664..000000000000
--- a/sci-biology/emboss/files/digest-emboss-3.0.0
+++ /dev/null
@@ -1 +0,0 @@
-MD5 fa72feded9ab9272e3e731c09f545dcc EMBOSS-3.0.0.tar.gz 16257908