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authorAndrey Kislyuk <weaver@gentoo.org>2009-01-05 00:47:55 +0000
committerAndrey Kislyuk <weaver@gentoo.org>2009-01-05 00:47:55 +0000
commit2b1daeee4727b3d5554332c275de0514d865f65e (patch)
tree210c418b53ad43be3fb4c3dc509d15a4195f8a24 /sci-biology
parentnew test snapshot (diff)
downloadhistorical-2b1daeee4727b3d5554332c275de0514d865f65e.tar.gz
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Version bump
Package-Manager: portage-2.2_rc12/cvs/Linux 2.6.26-tuxonice i686
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/iqpnni/ChangeLog10
-rw-r--r--sci-biology/iqpnni/Manifest5
-rw-r--r--sci-biology/iqpnni/files/iqpnni-3.3.1-gcc4.3.patch13
-rw-r--r--sci-biology/iqpnni/iqpnni-3.3.1.ebuild34
4 files changed, 59 insertions, 3 deletions
diff --git a/sci-biology/iqpnni/ChangeLog b/sci-biology/iqpnni/ChangeLog
index ba5a719d0357..1e5ce3950d54 100644
--- a/sci-biology/iqpnni/ChangeLog
+++ b/sci-biology/iqpnni/ChangeLog
@@ -1,6 +1,12 @@
# ChangeLog for sci-biology/iqpnni
-# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/iqpnni/ChangeLog,v 1.1 2008/10/30 13:43:35 weaver Exp $
+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/iqpnni/ChangeLog,v 1.2 2009/01/05 00:47:54 weaver Exp $
+
+*iqpnni-3.3.1 (05 Jan 2009)
+
+ 05 Jan 2009; weaver <weaver@gentoo.org> +files/iqpnni-3.3.1-gcc4.3.patch,
+ +iqpnni-3.3.1.ebuild:
+ Version bump
*iqpnni-3.2 (30 Oct 2008)
diff --git a/sci-biology/iqpnni/Manifest b/sci-biology/iqpnni/Manifest
index c8177dfecfd8..01967795edb3 100644
--- a/sci-biology/iqpnni/Manifest
+++ b/sci-biology/iqpnni/Manifest
@@ -1,4 +1,7 @@
+AUX iqpnni-3.3.1-gcc4.3.patch 369 RMD160 74225a86d0ce466a1fd6947e68e843c305ddc984 SHA1 b52819eabe81482392c9894356b758d788fe1435 SHA256 82d3045d6aaf373a833e216622f086621d3099184eb60840fe4249be46e37846
DIST iqpnni-3.2.tar.gz 638743 RMD160 12db2175defea96c23b8c1519d6e57a304d1eb6b SHA1 2bf94698f64b07af7681a082f106ec7a3934e342 SHA256 0e97a03841e3460b9e0ddadbfa27393bf370ff82725a620c8d46a1ce85e4a20f
+DIST iqpnni-3.3.1.tar.gz 650395 RMD160 c884bcb227b6e07ae47c9886ce5ff3eb3b7caf9f SHA1 2d5479f7bd598fe2adc27ae5e709fa3efe334a81 SHA256 bdc5873c5dd59b07b8f8c9547e86120b53fa3cd802ec7acdad61bacc4c3ac7d9
EBUILD iqpnni-3.2.ebuild 676 RMD160 429ff8e4dd47eaea596ffdf0eb717ea6ca626817 SHA1 c650c57ea002e7e4cafcb444de122dd41565f761 SHA256 4aec78451fee8a7eeac45dd6c0245624de9771e60b3dbae1c7866348c7c15005
-MISC ChangeLog 493 RMD160 3e0afad6c3d22f03daca0d93dffc71554118eb52 SHA1 8d572915d727245280999f28e752052714ecd6e5 SHA256 48d9b425248210adcfdeea26ea216fe47a4cf18e9b58a150a79256910c166e65
+EBUILD iqpnni-3.3.1.ebuild 771 RMD160 c741cd7be75dfe18894271e9556c16a2272a9e8d SHA1 53356dcf0d2db1efa0280e6a3a91baaabd41c967 SHA256 8462cf5ccadefd761de600a6c44773fb3de5027a3dac59d981da205291b41260
+MISC ChangeLog 638 RMD160 9e32236cd4724b1baeeddb3e11db882a5bd2b63f SHA1 b547ba1dd5bc4ccbea4625ceb6b78ee0ccd71bfe SHA256 a449a1ce7359a6964e089b2bebda6703cdec1954ae59725f511da7485c1e56e9
MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
diff --git a/sci-biology/iqpnni/files/iqpnni-3.3.1-gcc4.3.patch b/sci-biology/iqpnni/files/iqpnni-3.3.1-gcc4.3.patch
new file mode 100644
index 000000000000..c4f49284abc1
--- /dev/null
+++ b/sci-biology/iqpnni/files/iqpnni-3.3.1-gcc4.3.patch
@@ -0,0 +1,13 @@
+diff -rc iqpnni-3.3.1-orig/src/constant.h iqpnni-3.3.1/src/constant.h
+*** iqpnni-3.3.1-orig/src/constant.h 2009-01-04 19:33:35.000000000 -0500
+--- iqpnni-3.3.1/src/constant.h 2009-01-04 19:40:21.000000000 -0500
+***************
+*** 36,41 ****
+--- 36,42 ----
+ #include <stdio.h>
+ #include <math.h>
+ #include <string>
++ #include <string.h>
+
+ using namespace std;
+
diff --git a/sci-biology/iqpnni/iqpnni-3.3.1.ebuild b/sci-biology/iqpnni/iqpnni-3.3.1.ebuild
new file mode 100644
index 000000000000..dfd3150d787d
--- /dev/null
+++ b/sci-biology/iqpnni/iqpnni-3.3.1.ebuild
@@ -0,0 +1,34 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/iqpnni/iqpnni-3.3.1.ebuild,v 1.1 2009/01/05 00:47:54 weaver Exp $
+
+inherit eutils
+
+DESCRIPTION="Important Quartet Puzzling and NNI Operation"
+HOMEPAGE="http://www.cibiv.at/software/iqpnni/"
+SRC_URI="http://www.cibiv.at/software/iqpnni/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="doc"
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+src_unpack() {
+ unpack ${A}
+ cd "${S}"
+ epatch "${FILESDIR}"/${P}-*.patch
+}
+
+src_install() {
+ dobin src/iqpnni
+
+ dodoc ChangeLog AUTHORS README NEWS TODO
+ if use doc ; then
+ dohtml manual/iqpnni-manual.html
+ insinto /usr/share/doc/${P}
+ doins manual/iqpnni-manual.pdf
+ fi
+}