Moved from app-sci/phylip to sci-biology/phylip.

7 files changed, 148 insertions, 0 deletions

diff --git a/sci-biology/phylip/ChangeLog b/sci-biology/phylip/ChangeLog
new file mode 100644
index 000000000000..4a2851dd331e
--- /dev/null
+++ b/sci-biology/phylip/ChangeLog
@@ -0,0 +1,50 @@
+# ChangeLog for app-sci/phylip
+# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/phylip/ChangeLog,v 1.1 2004/12/23 21:37:02 ribosome Exp $
+
+*phylip-3.63 (23 Dec 2004)
+
+  23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +phylip-3.62.ebuild, +phylip-3.63.ebuild:
+  Moved from app-sci/phylip to sci-biology/phylip.
+
+*phylip-3.63 (19 Dec 2004)
+
+  19 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +phylip-3.63.ebuild:
+  New version.
+
+  2 Nov 2004; Lina Pezzella <j4rg0n@gentoo.org> -phylip-3.62.ebuild:
+  Keyworded ~ppc-macos.
+  
+  14 Oct 2004; Olivier Fisette <ribosome@gentoo.org> -phylip-3.61.ebuild,
+  phylip-3.62.ebuild:
+  Added 3.62 to x86. Removed old version. Use gcc.eclass rather than ${CC}.
+
+*phylip-3.62 (29 Sep 2004)
+
+  29 Sep 2004; Olivier Fisette <ribosome@gentoo.org> -phylip-3.5.ebuild,
+  -phylip-3.6.ebuild, phylip-3.61.ebuild, +phylip-3.62.ebuild:
+  Added 3.61 to x86. New version 3.62. Removed old versions.
+
+*phylip-3.61.ebuild (7 Aug 2004)
+
+  7 Aug 2004; Olivier Fisette <ribosome@gentoo.org> phylip-3.61.ebuild:
+  Version bump. The program icons are no longer part of the distribution.
+
+  23 Jul 2004; Jon Hood <squinky86@gentoo.org> phylip-3.6.ebuild:
+  Change virtual/glibc -> virtual/libc.
+
+  21 Jul 2004; David Holm <dholm@gentoo.org> phylip-3.6.ebuild:
+  Added to ~ppc.
+
+*phylip-3.6.ebuild (19 Jul 2004)
+
+  19 Jul 2004; Olivier Fisette <ribosome@gentoo.org> phylip-3.6.ebuild:
+  New version and a modified ebuild. Update suggested by Pablo Nehab-Hess
+  <natunobilis@gentoobr.org> (#38853).
+
+*phylip-3.5 (23 Apr 2003)
+
+  23 Apr 2003; Jon Portnoy <avenj@gentoo.org> phylip-3.5.ebuild :
+  Initial import. Ebuild submitted in bug #19856 by Stephen Diener
+  (sediener@unity.ncsu.edu).
diff --git a/sci-biology/phylip/Manifest b/sci-biology/phylip/Manifest
new file mode 100644
index 000000000000..d66e0a4fe5d6
--- /dev/null
+++ b/sci-biology/phylip/Manifest
@@ -0,0 +1,6 @@
+MD5 5aeacc04d3af37951adf6ad6f4d46c5d phylip-3.63.ebuild 961
+MD5 5a91c60c82f0719b92bc4cdc6835d63b phylip-3.62.ebuild 990
+MD5 097353e78166961bc0ff0fed19a2088f ChangeLog 1596
+MD5 e8b4df3df76800c376905734d8043cfa metadata.xml 216
+MD5 0481945687ffd40c06299b75ef705653 files/digest-phylip-3.62 64
+MD5 407269b8d1524b0f8e71dece76bdd291 files/digest-phylip-3.63 64
diff --git a/sci-biology/phylip/files/digest-phylip-3.62 b/sci-biology/phylip/files/digest-phylip-3.62
new file mode 100644
index 000000000000..001d7d7d8187
--- /dev/null
+++ b/sci-biology/phylip/files/digest-phylip-3.62
@@ -0,0 +1 @@
+MD5 2f3858d2628e499cb6d7a817f359364b phylip-3.62.tar.gz 1046539
diff --git a/sci-biology/phylip/files/digest-phylip-3.63 b/sci-biology/phylip/files/digest-phylip-3.63
new file mode 100644
index 000000000000..5a62a93f6130
--- /dev/null
+++ b/sci-biology/phylip/files/digest-phylip-3.63
@@ -0,0 +1 @@
+MD5 8bf06a775e68163f419e308597e08831 phylip-3.63.tar.bz2 601374
diff --git a/sci-biology/phylip/metadata.xml b/sci-biology/phylip/metadata.xml
new file mode 100644
index 000000000000..8a4bcd47220d
--- /dev/null
+++ b/sci-biology/phylip/metadata.xml
@@ -0,0 +1,6 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<maintainer><email>sediener@gentoo.org</email></maintainer>
+</pkgmetadata>
diff --git a/sci-biology/phylip/phylip-3.62.ebuild b/sci-biology/phylip/phylip-3.62.ebuild
new file mode 100644
index 000000000000..062a535900cf
--- /dev/null
+++ b/sci-biology/phylip/phylip-3.62.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/phylip/phylip-3.62.ebuild,v 1.1 2004/12/23 21:37:02 ribosome Exp $
+
+inherit gcc
+
+DESCRIPTION="PHYLIP - The PHYLogeny Inference Package"
+HOMEPAGE="http://evolution.genetics.washington.edu/${PN}.html"
+SRC_URI="ftp://evolution.genetics.washington.edu/pub/${PN}/${P}.tar.gz"
+LICENSE="freedist"
+
+SLOT="0"
+KEYWORDS="x86 ~ppc ~ppc-macos"
+IUSE=""
+
+DEPEND="virtual/libc
+	virtual/x11"
+
+S=${WORKDIR}/${P}/src
+
+src_compile() {
+	sed -i -e "s/CFLAGS =/CFLAGS = ${CFLAGS}/" Makefile
+	sed -i -e "s/CC        = cc/CC        = $(gcc-getCC)/" Makefile
+	sed -i -e "s/DC        = cc/DC        = $(gcc-getCC)/" Makefile
+	mkdir ../fonts
+	emake -j1 all put || die
+	mv ../exe/font* ../fonts
+}
+
+src_install()
+{
+	cd ${WORKDIR}/${P}
+
+	dobin exe/*
+
+	dohtml phylip.html
+	insinto /usr/share/doc/${PF}/html/doc
+	doins doc/*
+
+	insinto /usr/share/${PN}/fonts
+	doins fonts/*
+}
diff --git a/sci-biology/phylip/phylip-3.63.ebuild b/sci-biology/phylip/phylip-3.63.ebuild
new file mode 100644
index 000000000000..14e3b3d87db3
--- /dev/null
+++ b/sci-biology/phylip/phylip-3.63.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/phylip/phylip-3.63.ebuild,v 1.1 2004/12/23 21:37:02 ribosome Exp $
+
+inherit gcc
+
+DESCRIPTION="PHYLIP - The PHYLogeny Inference Package"
+HOMEPAGE="http://evolution.genetics.washington.edu/phylip.html"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+LICENSE="freedist"
+
+SLOT="0"
+KEYWORDS="~x86 ~ppc ~ppc-macos"
+IUSE=""
+
+DEPEND="virtual/libc
+	virtual/x11"
+
+S=${WORKDIR}/${P}/src
+
+src_compile() {
+	sed -i -e "s/CFLAGS =/CFLAGS = ${CFLAGS}/" Makefile
+	sed -i -e "s/CC        = cc/CC        = $(gcc-getCC)/" Makefile
+	sed -i -e "s/DC        = cc/DC        = $(gcc-getCC)/" Makefile
+	mkdir ../fonts
+	emake -j1 all put || die
+	mv ../exe/font* ../fonts
+}
+
+src_install()
+{
+	cd ${WORKDIR}/${P}
+
+	dobin exe/*
+
+	dohtml phylip.html
+	insinto /usr/share/doc/${PF}/html/doc
+	doins doc/*
+
+	insinto /usr/share/${PN}/fonts
+	doins fonts/*
+}