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author | Markus Dittrich <markusle@gentoo.org> | 2008-09-07 12:02:02 +0000 |
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committer | Markus Dittrich <markusle@gentoo.org> | 2008-09-07 12:02:02 +0000 |
commit | 20983046c4a4266502d49cdafedf6083cecf907d (patch) | |
tree | e1588fab03d961f1357708de95c937d6ba28645a /sci-biology | |
parent | Fix outdated HOMEPAGE and keyword amd64. (diff) | |
download | historical-20983046c4a4266502d49cdafedf6083cecf907d.tar.gz historical-20983046c4a4266502d49cdafedf6083cecf907d.tar.bz2 historical-20983046c4a4266502d49cdafedf6083cecf907d.zip |
Version bump and removed old ebuilds.
Package-Manager: portage-2.2_rc8/cvs/Linux 2.6.26-SENTINEL-2 i686
Diffstat (limited to 'sci-biology')
-rw-r--r-- | sci-biology/paml/ChangeLog | 8 | ||||
-rw-r--r-- | sci-biology/paml/Manifest | 8 | ||||
-rw-r--r-- | sci-biology/paml/paml-3.15.ebuild | 33 | ||||
-rw-r--r-- | sci-biology/paml/paml-4.1.ebuild (renamed from sci-biology/paml/paml-4a.ebuild) | 18 |
4 files changed, 21 insertions, 46 deletions
diff --git a/sci-biology/paml/ChangeLog b/sci-biology/paml/ChangeLog index 76b367db7884..14a46a4f9dff 100644 --- a/sci-biology/paml/ChangeLog +++ b/sci-biology/paml/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/paml # Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.3 2008/04/20 11:11:20 markusle Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.4 2008/09/07 12:02:02 markusle Exp $ + +*paml-4.1 (07 Sep 2008) + + 07 Sep 2008; Markus Dittrich <markusle@gentoo.org> -paml-3.15.ebuild, + +paml-4.1.ebuild, -paml-4a.ebuild: + Version bump and removed old ebuilds. *paml-4b (20 Apr 2008) diff --git a/sci-biology/paml/Manifest b/sci-biology/paml/Manifest index 936464c45388..d7614adc3c7c 100644 --- a/sci-biology/paml/Manifest +++ b/sci-biology/paml/Manifest @@ -1,8 +1,6 @@ -DIST paml3.15.tar.gz 2364043 RMD160 b38655012237f9237a1c9474746f504804395045 SHA1 0628b3557a20ba8a9a173c39fec2093f056e1050 SHA256 f698b1d57b514e5e06e746899eae1245d098e96881e2a31c9b8fc956beb4f62a -DIST paml4a.tar.gz 2377543 RMD160 5be2b6e82f0abc52e1e4251a0b8728e4cece684b SHA1 7f1d8b40f27d735385735cc1652b6bf5a7aa1c06 SHA256 436968adfad51c0b9f28a5bc1196a5e123005b8e9c6df0c4200d791b7ed90f4e +DIST paml4.1.tar.gz 2865301 RMD160 44e5eb18eb9a168c6d2f090ff45462e07234bc07 SHA1 790c83990a93baec48b55686bb350bed43fdc440 SHA256 64680a56304bb3f5cd61cfc9be253fe1fe37250cb450bceaaf76b99ee08111f1 DIST paml4b.tar.gz 2380479 RMD160 4772ee6c736cc80cc299086c3f18446c22316321 SHA1 adbea6d18d3ea7f87ec37f14a1fe9cabecd1075f SHA256 2b8ebb8f276a822f7589fffe54ee31e170577b811e256536649c793e57d5a94a -EBUILD paml-3.15.ebuild 799 RMD160 1590abccf695a390f4ebdd875f88bea662fcaba1 SHA1 cda700a52156d4441a561078aa8c6de216d14c61 SHA256 880d7c220b0ae9f1f10f20d5a1cc7a549a29d7d918165f0a0a93d6ad4a4884f7 -EBUILD paml-4a.ebuild 1091 RMD160 a622f5b7952f73d1460ba93f87bbc7f77909f1fa SHA1 fb54e9266541e2ff23c6f610e4e382e03b5100d8 SHA256 f42967e0be8ce0a420f303b366ec895430cbd965269e9e9c22fe08811f108fb0 +EBUILD paml-4.1.ebuild 1159 RMD160 e92d3c17407d5362b4438749c3d0d21eaad34337 SHA1 c848a2aee7e7fd0bfbde46b95899a5f84c7e58d6 SHA256 552630b699f130fa154eb719eecccc3a5ec58bfc398344aa3d54ca270fee4aa7 EBUILD paml-4b.ebuild 1098 RMD160 aae656e556014013603f048c7bfa950cbf668e61 SHA1 a3326fc7c9f0409116dc00395241b749d043dc7a SHA256 7d0a9eec0b66114a6e1a201de8e5909f84dfd74b57fc81e3c76d247582b55d13 -MISC ChangeLog 644 RMD160 bf32f2573d8888379d01f8e9db5d01140f4ed588 SHA1 43ad58ccaf95f592dcfe394d570427cd51617587 SHA256 d7d102ec5ba7dcd33433f8143354d73f475d7416012f4f574dc1e281c956a388 +MISC ChangeLog 819 RMD160 293fa03f8081c82a8fc8155e1d27d938bb84eb0f SHA1 0bf663c5bb4d7ffcafba6d6b78d4b35ae1381f8e SHA256 0233e402d6913b7d87aec6831ae4a57f6c488a1f45e3a521e808a06656e34d4d MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f diff --git a/sci-biology/paml/paml-3.15.ebuild b/sci-biology/paml/paml-3.15.ebuild deleted file mode 100644 index 4c5ab262db60..000000000000 --- a/sci-biology/paml/paml-3.15.ebuild +++ /dev/null @@ -1,33 +0,0 @@ -# Copyright 1999-2007 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-3.15.ebuild,v 1.2 2007/11/22 13:26:59 markusle Exp $ - -inherit toolchain-funcs - -MY_P="${P/-}" -DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood" -HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html" -SRC_URI="http://abacus.gene.ucl.ac.uk/software/${MY_P}.tar.gz" -LICENSE="free-noncomm" -SLOT="0" -KEYWORDS="~x86" -IUSE="" -RDEPEND="" -DEPEND="${RDEPEND}" -S="${WORKDIR}/${MY_P}" - -src_compile() { - cd src - emake \ - -f Makefile.UNIX \ - CC="$(tc-getCC)" \ - CFLAGS="${CFLAGS}" \ - || die "make failed" -} - -src_install() { - pushd "${S}"/src - dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 - popd - dodoc README.txt doc/* -} diff --git a/sci-biology/paml/paml-4a.ebuild b/sci-biology/paml/paml-4.1.ebuild index a47b92d6794e..f2ea1263ca95 100644 --- a/sci-biology/paml/paml-4a.ebuild +++ b/sci-biology/paml/paml-4.1.ebuild @@ -1,21 +1,20 @@ # Copyright 1999-2008 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4a.ebuild,v 1.2 2008/04/20 11:11:20 markusle Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4.1.ebuild,v 1.1 2008/09/07 12:02:02 markusle Exp $ inherit toolchain-funcs -MY_PV="${PV:0:1}" -MY_P="${PN}${MY_PV}" +MY_PV="${PV/./}" DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood" HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html" SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz" LICENSE="free-noncomm" SLOT="0" -KEYWORDS="~x86" +KEYWORDS="~x86 ~amd64" IUSE="" RDEPEND="" DEPEND="${RDEPEND}" -S="${WORKDIR}/${MY_P}" +S="${WORKDIR}/${PN}${MY_PV}" src_compile() { cd src @@ -28,13 +27,18 @@ src_compile() { src_install() { pushd "${S}"/src - dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 + dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 \ + || die "Failed to install binaries" popd - dodoc README.txt doc/* + + dodoc README.txt doc/* || die "Failed to install docs" + insinto /usr/share/${PN}/control doins *.ctl || die "Failed to install control files" + insinto /usr/share/${PN}/dat doins stewart* *.dat dat/* || die "Failed to install data files" + insinto /usr/share/${PN} doins -r examples/ || die "Failed to install examples" } |