New upstream version.

Package-Manager: portage-2.1.4.4

4 files changed, 98 insertions, 4 deletions

diff --git a/sci-biology/prosite/ChangeLog b/sci-biology/prosite/ChangeLog
index 51996fb68a99..41d1a152b23b 100644
--- a/sci-biology/prosite/ChangeLog
+++ b/sci-biology/prosite/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/prosite
-# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.100 2007/08/20 17:22:32 ribosome Exp $
+# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.101 2008/08/27 14:57:17 ribosome Exp $
+
+*prosite-20.36 (27 Aug 2008)
+
+  27 Aug 2008; Olivier Fisette <ribosome@gentoo.org> +prosite-20.36.ebuild:
+  New upstream version.
 
 *prosite-20.17 (20 Aug 2007)
 
diff --git a/sci-biology/prosite/prosite-20.36.ebuild b/sci-biology/prosite/prosite-20.36.ebuild
new file mode 100644
index 000000000000..46bcac9507c3
--- /dev/null
+++ b/sci-biology/prosite/prosite-20.36.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-20.36.ebuild,v 1.1 2008/08/27 14:57:17 ribosome Exp $
+
+DESCRIPTION="A protein families and domains database"
+LICENSE="swiss-prot"
+HOMEPAGE="http://ca.expasy.org/prosite"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
+
+DEPEND="emboss? ( >=sci-biology/emboss-3.0.0 )"
+
+src_compile() {
+	if use emboss; then
+		mkdir PROSITE
+		echo
+		einfo "Indexing PROSITE for usage with EMBOSS."
+		EMBOSS_DATA="." prosextract -auto -prositedir "${S}" || die \
+			"Indexing PROSITE failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins *.{doc,dat} || die "Installing raw database failed."
+	fi
+	insinto /usr/share/doc/${PF}
+	doins *.pdf || die "PDF documentation installation failed."
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/PROSITE
+		doins PROSITE/* || die "Installing EMBOSS data files failed."
+	fi
+}
diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index d2f125044506..54edb86b2034 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/rebase
-# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.86 2007/08/20 17:25:03 ribosome Exp $
+# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.87 2008/08/27 14:58:50 ribosome Exp $
+
+*rebase-808 (27 Aug 2008)
+
+  27 Aug 2008; Olivier Fisette <ribosome@gentoo.org> +rebase-808.ebuild:
+  New upstream version.
 
 *rebase-708 (20 Aug 2007)
 
diff --git a/sci-biology/rebase/rebase-808.ebuild b/sci-biology/rebase/rebase-808.ebuild
new file mode 100644
index 000000000000..f0c9ca09d672
--- /dev/null
+++ b/sci-biology/rebase/rebase-808.ebuild
@@ -0,0 +1,44 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-808.ebuild,v 1.1 2008/08/27 14:58:50 ribosome Exp $
+
+DESCRIPTION="A restriction enzyme database"
+LICENSE="public-domain"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
+
+DEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+
+src_compile() {
+	if use emboss; then
+		echo; einfo "Indexing Rebase for usage with EMBOSS."
+		mkdir REBASE
+		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${PV} \
+				-protofile proto.${PV} -equivalences \
+				|| die "Indexing Rebase failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins withrefm.${PV} proto.${PV} || die \
+				"Failed to install raw database."
+	fi
+	newdoc REBASE.DOC README || die "Failed to install documentation."
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/embossre.{enz,ref,sup} || die \
+				"Failed to install EMBOSS data files."
+		insinto /usr/share/EMBOSS/data
+		doins REBASE/embossre.equ \
+				|| die "Failed to install enzyme prototypes file."
+	fi
+}