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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-09-04 19:12:50 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-09-04 19:12:50 +0000 |
| commit | bba81e3f8888189e8d33dcb75e9becef631f592d (patch) | |
| tree | e1719f844e54964dbad4a9c3d8e59fdc9e4f119d /sci-biology/raxml | |
| parent | Remove mask for app-emacs/mule-ucs since it is gone from the tree. (diff) | |
| download | historical-bba81e3f8888189e8d33dcb75e9becef631f592d.tar.gz historical-bba81e3f8888189e8d33dcb75e9becef631f592d.tar.bz2 historical-bba81e3f8888189e8d33dcb75e9becef631f592d.zip | |
Version bump (but no mpi support in 7.2.2)
Package-Manager: portage-2.2_rc30/cvs/Linux x86_64
Diffstat (limited to 'sci-biology/raxml')
| -rw-r--r-- | sci-biology/raxml/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/raxml/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/raxml/raxml-7.2.2.ebuild | 38 |
3 files changed, 47 insertions, 2 deletions
diff --git a/sci-biology/raxml/ChangeLog b/sci-biology/raxml/ChangeLog index 8aada1fdc747..f12863898ccf 100644 --- a/sci-biology/raxml/ChangeLog +++ b/sci-biology/raxml/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/raxml # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/ChangeLog,v 1.1 2009/09/04 03:04:43 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/ChangeLog,v 1.2 2009/09/04 19:12:50 weaver Exp $ + +*raxml-7.2.2 (04 Sep 2009) + + 04 Sep 2009; Andrey Kislyuk <weaver@gentoo.org> +raxml-7.2.2.ebuild: + Version bump (but no mpi support in 7.2.2) *raxml-7.0.4 (03 Sep 2009) diff --git a/sci-biology/raxml/Manifest b/sci-biology/raxml/Manifest index b1c26c643171..57491fa3d784 100644 --- a/sci-biology/raxml/Manifest +++ b/sci-biology/raxml/Manifest @@ -1,4 +1,6 @@ DIST RAxML-7.0.4.tar.bz2 435099 RMD160 c3cc2fa38bf3cdbfcd4251400f572dccbb671288 SHA1 ee8bb3a07f89ff00d59872f970ac2159186255ff SHA256 d6affcfc214fcebbb5e017e38422b40468710575f072e484591c1ada19217a5c +DIST RAxML-7.2.2.tar.bz2 183560 RMD160 93356bab984084316c920cb411d4570601dab1a6 SHA1 30e183bb09592d0297115e21455629192272a6d2 SHA256 eebdd51db22a1d2630e82d1b478eb66fc189e0101ef4e8ae6e56c7a4ca84a7f8 EBUILD raxml-7.0.4.ebuild 1156 RMD160 0f91a92b761421ed72d01a3e99a59833710a5ef8 SHA1 1e3b7db6ff5c26de591d720c5617d8c68fc2e84c SHA256 073e97cd8f9351893e2ea7c8f912e1284e859b0ccf8f6b1ac60444fcf466b6f6 -MISC ChangeLog 360 RMD160 e083bd994ce7303d3e93f0933c692ab520d04529 SHA1 ed8b2ba12cd16072b90490b7a2b1078afbd5de32 SHA256 7ff7aca8b69a98035baf63a6e972d871fb1a6352e3996aa189913961c4911701 +EBUILD raxml-7.2.2.ebuild 1130 RMD160 0f4d7c2fbda9a84b7e580816abfbe662b9900c39 SHA1 f7722427ff38075d04386d16b7479a7c2cc6b421 SHA256 dbe055536369d00f3868f6e659e44c6397db46aa191ec40cbbdc8bc35d779bfc +MISC ChangeLog 505 RMD160 19c4c83360e7249ebe7c734f56ce1914ad36c5ec SHA1 4515ab4bad30144bd42744f04b2f2b18fa33e4b4 SHA256 04f4c5bca24fe74682340164f7197b725a95ac3826bcbc380172c083dde34c31 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/raxml/raxml-7.2.2.ebuild b/sci-biology/raxml/raxml-7.2.2.ebuild new file mode 100644 index 000000000000..b112de055eea --- /dev/null +++ b/sci-biology/raxml/raxml-7.2.2.ebuild @@ -0,0 +1,38 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/raxml-7.2.2.ebuild,v 1.1 2009/09/04 19:12:50 weaver Exp $ + +EAPI="2" + +inherit toolchain-funcs + +DESCRIPTION="A Program for Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees" +HOMEPAGE="http://wwwkramer.in.tum.de/exelixis/software.html" +SRC_URI="http://wwwkramer.in.tum.de/exelixis/software/RAxML-${PV}.tar.bz2" + +LICENSE="GPL-2" +SLOT="0" +IUSE="+threads" +KEYWORDS="~amd64 ~x86" + +# errors compiling mpi for version 7.2.2. mpi is enabled by adding -DPARALLEL to CFLAGS +DEPEND="" # mpi? ( virtual/mpi )" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/RAxML-${PV}" + +src_prepare() { + sed -i -e 's/CFLAGS =/CFLAGS := ${CFLAGS}/' \ + -e 's/CC = gcc/CC = '$(tc-getCC)'/' \ + Makefile.* || die +} + +src_compile() { + emake -f Makefile.SSE3.gcc || die + if use threads; then emake -f Makefile.SSE3.PTHREADS.gcc clean && emake -f Makefile.SSE3.PTHREADS.gcc || die; fi +} + +src_install() { + dobin raxmlHPC-SSE3 || die + if use threads; then dobin raxmlHPC-PTHREADS-SSE3 || die; fi +} |