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authorDonnie Berkholz <dberkholz@gentoo.org>2008-03-21 21:23:44 +0000
committerDonnie Berkholz <dberkholz@gentoo.org>2008-03-21 21:23:44 +0000
commitef802717bdee804e4d9388fb2f7c540cfe32ece8 (patch)
treec9b28771ba19656f42973b5dabe12f40de3a794f /sci-biology/muscle
parentx86 stable, bug #209100 (diff)
downloadhistorical-ef802717bdee804e4d9388fb2f7c540cfe32ece8.tar.gz
historical-ef802717bdee804e4d9388fb2f7c540cfe32ece8.tar.bz2
historical-ef802717bdee804e4d9388fb2f7c540cfe32ece8.zip
Bump. Bug fixes and undocumented new features.
Package-Manager: portage-2.1.4.4
Diffstat (limited to 'sci-biology/muscle')
-rw-r--r--sci-biology/muscle/ChangeLog9
-rw-r--r--sci-biology/muscle/Manifest14
-rw-r--r--sci-biology/muscle/muscle-3.7.ebuild38
3 files changed, 58 insertions, 3 deletions
diff --git a/sci-biology/muscle/ChangeLog b/sci-biology/muscle/ChangeLog
index de72cd679675..98d26dd5e515 100644
--- a/sci-biology/muscle/ChangeLog
+++ b/sci-biology/muscle/ChangeLog
@@ -1,6 +1,11 @@
# ChangeLog for sci-biology/muscle
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/ChangeLog,v 1.8 2007/12/31 15:40:36 je_fro Exp $
+# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/ChangeLog,v 1.9 2008/03/21 21:23:44 dberkholz Exp $
+
+*muscle-3.7 (21 Mar 2008)
+
+ 21 Mar 2008; Donnie Berkholz <dberkholz@gentoo.org>; +muscle-3.7.ebuild:
+ Bump. Bug fixes and undocumented new features.
31 Dec 2007; Jeff Gardner <je_fro@gentoo.org> ChangeLog:
fixing my email addy
diff --git a/sci-biology/muscle/Manifest b/sci-biology/muscle/Manifest
index a3f40f39eb52..fe3b0e3519eb 100644
--- a/sci-biology/muscle/Manifest
+++ b/sci-biology/muscle/Manifest
@@ -1,4 +1,16 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
DIST muscle3.6_src.tar.gz 185267 RMD160 4afda92b982ec2b05853a582479c61a7d8814f51 SHA1 e8a4998ee10a8f067fd1ba63966e32e69da62d36 SHA256 32b818a51f421e1d687f513dc31374a330470950151a5e7df961e64781699431
+DIST muscle3.7_src.tar.gz 189907 RMD160 6eb64afd2032914781f453b925589c35e432b96c SHA1 6a3cbef3a8a00cf230f17bf90592f7108607d103 SHA256 a028f545612f9d260e35909959e98ae7aec552b1eac8806c3ae59cf1b00f7235
EBUILD muscle-3.6.ebuild 825 RMD160 5c2e68629d7197f7e32cc4508a4a463e908fde9d SHA1 2e5dfe63244ee714fdfbd927672fc8d7dafdae6b SHA256 d855755012cbf3ad81a67cc1583bf58e080b35c2f78f756b7cc5a4c2b41470bd
-MISC ChangeLog 1195 RMD160 b9049243629ee6a15da67f525d583f280911399d SHA1 5771a73869b6e67b445668953e5b3648a1d04711 SHA256 e01c55184e9c998d20a678ef71c968648a6350f7382560beb4f4ea32b713357a
+EBUILD muscle-3.7.ebuild 825 RMD160 e6c35313339f5fc88335ca67fff7e4b611dd0f71 SHA1 4dacfcc7bc9cdb2112fac98d20c56f0e9cb71f14 SHA256 71e7761587be1614148abad00578fd4fb19c7b7572ed86b136a4c2f5eefd3dca
+MISC ChangeLog 1350 RMD160 76fe19bc658b890017bfe317e47da53d31d0f755 SHA1 a971d9387c43a8fd11904627684dea0a72884084 SHA256 3574e30a3e43264e4c9c33f9697c45672a41c020538af52c29ba81ef8ce9af63
MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.7 (GNU/Linux)
+
+iD8DBQFH5CdoXVaO67S1rtsRAngoAJ9YI33JVcuwZrcP9Mn7PVisGcN0KQCghk2a
+/fj7R28H1dXBluTWpUcyeo0=
+=Zt0f
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/muscle/muscle-3.7.ebuild b/sci-biology/muscle/muscle-3.7.ebuild
new file mode 100644
index 000000000000..346ccedb1ae5
--- /dev/null
+++ b/sci-biology/muscle/muscle-3.7.ebuild
@@ -0,0 +1,38 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/muscle-3.7.ebuild,v 1.1 2008/03/21 21:23:44 dberkholz Exp $
+
+inherit toolchain-funcs
+
+MY_P="${PN}${PV}_src"
+DESCRIPTION="Multiple sequence comparison by log-expectation"
+HOMEPAGE="http://www.drive5.com/muscle/"
+SRC_URI="http://www.drive5.com/muscle/downloads${PV}/${MY_P}.tar.gz"
+LICENSE="public-domain"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86"
+IUSE=""
+RDEPEND=""
+DEPEND="${RDEPEND}"
+S="${WORKDIR}"
+
+src_unpack() {
+ unpack ${A}
+ sed -i \
+ "s:-static::g" \
+ "${S}/Makefile"
+ sed -i \
+ "/strip/d" \
+ "${S}/Makefile"
+}
+
+src_compile() {
+ emake \
+ GPP="$(tc-getCXX)" \
+ CFLAGS="${CXXFLAGS}" \
+ || die "make failed"
+}
+
+src_install() {
+ DESTTREE="/usr" dobin muscle
+}