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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2008-09-07 13:11:13 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2008-09-07 13:11:13 +0000 |
| commit | d4bed2d6a06c42920b8df0c4f38cadb0a2125c69 (patch) | |
| tree | 90113c2bd4629dfae35c1ab7e017a74b6567db1d /sci-biology/glimmer | |
| parent | Inital import, thanks to Christian Ruppert, bug #232353 (diff) | |
| download | historical-d4bed2d6a06c42920b8df0c4f38cadb0a2125c69.tar.gz historical-d4bed2d6a06c42920b8df0c4f38cadb0a2125c69.tar.bz2 historical-d4bed2d6a06c42920b8df0c4f38cadb0a2125c69.zip | |
Import from science overlay
Package-Manager: portage-2.2_rc8/cvs/Linux 2.6.26-tuxonice i686
Diffstat (limited to 'sci-biology/glimmer')
| -rw-r--r-- | sci-biology/glimmer/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/glimmer/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/glimmer/glimmer-3.02.ebuild | 39 | ||||
| -rw-r--r-- | sci-biology/glimmer/metadata.xml | 5 |
4 files changed, 58 insertions, 0 deletions
diff --git a/sci-biology/glimmer/ChangeLog b/sci-biology/glimmer/ChangeLog new file mode 100644 index 000000000000..1ff0c293bf76 --- /dev/null +++ b/sci-biology/glimmer/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/glimmer +# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/glimmer/ChangeLog,v 1.1 2008/09/07 13:06:53 weaver Exp $ + +*glimmer-3.02 (07 Sep 2008) + + 07 Sep 2008; weaver <weaver@gentoo.org> +metadata.xml, + +glimmer-3.02.ebuild: + Import from science overlay + diff --git a/sci-biology/glimmer/Manifest b/sci-biology/glimmer/Manifest new file mode 100644 index 000000000000..b3566040bbf1 --- /dev/null +++ b/sci-biology/glimmer/Manifest @@ -0,0 +1,4 @@ +DIST glimmer302.tar.gz 5637075 RMD160 bc29bb045f7a4179504cb3843741393f42e11ab8 SHA1 e2f27fdab82cd8978f1452bfcd4c0287c52b77b7 SHA256 a1e422ee56f495f9f99e1741ba2043f026fc8182afcc47cb20cfd2d989537221 +EBUILD glimmer-3.02.ebuild 839 RMD160 fbe13a8a0733c0b2c54c94d3ccf7d45d85ce6496 SHA1 272a86bfe05bc0497e942c0935df0296acdbc4fc SHA256 f71989667fdaa9701f56d29cc0eec1645293998b2351ee40ec9255d02006d2d5 +MISC ChangeLog 261 RMD160 3d4b2dad41a2f02e4f2a2e8649db1dc83f1d4291 SHA1 e840f8786b3f1b5a7d9eaf1828e7d080e45d85cc SHA256 c6e746e68cb4436a9fc4f7f17a7fd3e0b4ec80ebaf1b9b4c100c96f71ca20a33 +MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 diff --git a/sci-biology/glimmer/glimmer-3.02.ebuild b/sci-biology/glimmer/glimmer-3.02.ebuild new file mode 100644 index 000000000000..d3239d16c2e9 --- /dev/null +++ b/sci-biology/glimmer/glimmer-3.02.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2008 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/glimmer/glimmer-3.02.ebuild,v 1.1 2008/09/07 13:06:53 weaver Exp $ + +inherit versionator + +MY_PV=$(delete_all_version_separators) + +DESCRIPTION="An HMM-based microbial gene finding system from TIGR" +HOMEPAGE="http://www.cbcb.umd.edu/software/glimmer/" +SRC_URI="http://www.cbcb.umd.edu/software/${PN}/${PN}${MY_PV}.tar.gz" + +LICENSE="Artistic" +SLOT="0" +IUSE="" +KEYWORDS="~x86" + +DEPEND="" +RDEPEND="" + +S=${WORKDIR}/${PN}${PV} + +src_compile() { + sed -i -e 's|\(set awkpath =\).*|\1 /usr/share/'${PN}'/scripts|' \ + -e 's|\(set glimmerpath =\).*|\1 /usr/bin|' scripts/* || die "failed to rewrite paths" + cd src + emake || die "emake failed" +} + +src_install() { + rm bin/test + dobin bin/* + + dodir /usr/share/${PN}/scripts + insinto /usr/share/${PN}/scripts + doins scripts/* + + dodoc glim302notes.pdf +} diff --git a/sci-biology/glimmer/metadata.xml b/sci-biology/glimmer/metadata.xml new file mode 100644 index 000000000000..7e3286984488 --- /dev/null +++ b/sci-biology/glimmer/metadata.xml @@ -0,0 +1,5 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>maintainer-wanted</herd> +</pkgmetadata> |