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| author |   Justin Lecher <jlec@gentoo.org> | 2013-01-24 07:58:58 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2013-01-24 07:58:58 +0000 |
| commit | c39906f84c248cac28cd8f203805c234fe78c1a7 (patch) | |
| tree | 4361e227b83bf5343a40ef34be18bcfd45df2c0c /dev-perl/Bio-SamTools | |
| parent | sci-libs/libticables2: We need enable-libusb and enable-libusb10 for usb supp... (diff) | |
| download | historical-c39906f84c248cac28cd8f203805c234fe78c1a7.tar.gz historical-c39906f84c248cac28cd8f203805c234fe78c1a7.tar.bz2 historical-c39906f84c248cac28cd8f203805c234fe78c1a7.zip | |
dev-perl/Bio-SamTools: Bump module version and fix buildsystem, #452364
Package-Manager: portage-2.2.0_alpha154/cvs/Linux x86_64
Manifest-Sign-Key: 0x70EB7916
Diffstat (limited to 'dev-perl/Bio-SamTools')
| -rw-r--r-- | dev-perl/Bio-SamTools/Bio-SamTools-1.370.0-r1.ebuild (renamed from dev-perl/Bio-SamTools/Bio-SamTools-1.370.0.ebuild) | 18 | ||||
| -rw-r--r-- | dev-perl/Bio-SamTools/ChangeLog | 8 | ||||
| -rw-r--r-- | dev-perl/Bio-SamTools/Manifest | 13 |
3 files changed, 26 insertions, 13 deletions
diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.370.0.ebuild b/dev-perl/Bio-SamTools/Bio-SamTools-1.370.0-r1.ebuild index a7c6ff8e1238..23cc2c4bd75b 100644 --- a/dev-perl/Bio-SamTools/Bio-SamTools-1.370.0.ebuild +++ b/dev-perl/Bio-SamTools/Bio-SamTools-1.370.0-r1.ebuild @@ -1,11 +1,11 @@ # Copyright 1999-2013 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.370.0.ebuild,v 1.1 2013/01/23 10:53:12 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.370.0-r1.ebuild,v 1.1 2013/01/24 07:58:57 jlec Exp $ EAPI=4 MODULE_AUTHOR=LDS -MODULE_VERSION=1.33 +MODULE_VERSION=1.37 inherit perl-module DESCRIPTION="Read SAM/BAM database files" @@ -24,10 +24,16 @@ DEPEND="${RDEPEND} SRC_TEST=do src_prepare() { - sed -i -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \ - -e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' Build.PL || die - sed -i -e 's|#include "bam.h"|#include "bam/bam.h"|' \ + sed \ + -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \ + -e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' \ + -i Build.PL || die + sed \ + -e 's|#include "bam.h"|#include "bam/bam.h"|' \ + -e 's|#include "sam.h"|#include "bam/sam.h"|' \ -e 's|#include "khash.h"|#include "bam/khash.h"|' \ - -e 's|#include "faidx.h"|#include "bam/faidx.h"|' lib/Bio/DB/Sam.xs || die + -e 's|#include "faidx.h"|#include "bam/faidx.h"|' \ + -i lib/Bio/DB/Sam.xs c_bin/bam2bedgraph.c || die + perl-module_src_prepare } diff --git a/dev-perl/Bio-SamTools/ChangeLog b/dev-perl/Bio-SamTools/ChangeLog index 20a74bfa70ac..07b3232bde37 100644 --- a/dev-perl/Bio-SamTools/ChangeLog +++ b/dev-perl/Bio-SamTools/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for dev-perl/Bio-SamTools # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.9 2013/01/23 10:53:12 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.10 2013/01/24 07:58:57 jlec Exp $ + +*Bio-SamTools-1.370.0-r1 (24 Jan 2013) + + 24 Jan 2013; Justin Lecher <jlec@gentoo.org> -Bio-SamTools-1.370.0.ebuild, + +Bio-SamTools-1.370.0-r1.ebuild: + Bump module version and fix buildsystem, #452364 *Bio-SamTools-1.370.0 (23 Jan 2013) diff --git a/dev-perl/Bio-SamTools/Manifest b/dev-perl/Bio-SamTools/Manifest index dcee4c2147cb..443980ba1da0 100644 --- a/dev-perl/Bio-SamTools/Manifest +++ b/dev-perl/Bio-SamTools/Manifest @@ -1,15 +1,16 @@ -----BEGIN PGP SIGNED MESSAGE----- -Hash: SHA512 +Hash: SHA256 DIST Bio-SamTools-1.33.tar.gz 332340 SHA256 b908b829b76097b4ee8015fe0271a2bd56a1bbaa2ca6698a96c741d80d2dfc70 SHA512 946407ee7bed66c43ce56c7e68fb4d2b790caa0d97aa8645e4243147e14a1ad1c4d96ce3a566d5520163328fd9934926b246473a1efbfd4cac32b1c7663e9a1e WHIRLPOOL d1a92ad3ae11e8441c59433180584921313fdacfe0e5e1ffe7afd0677fc723541889719b9ac428d81be1f48f90391633e07cfab1a2ffe7f6eb5f076eb60cc8af +DIST Bio-SamTools-1.37.tar.gz 335234 SHA256 27d60817018512c95f516b1c7328434756c9d651b200e2dcaf62f6c82f1ca220 SHA512 43a535b33a171f9faaf50d1cc9ca9c653dd8f4e3d7c030d3f5a839cefea19c6bb8e518d96605ef57cae195a6f98f55ced954be84f0b4a3c1c45b0290380e1ffe WHIRLPOOL 55c36936e0e45884332a54de4df07a0d3ed16fe4ace663e47eeb167aeeddeba9ef605acb2ecfcc62d2e813cb891cc8ad40488da7ae9b771dc15f7d5e428c4de7 EBUILD Bio-SamTools-1.330.0.ebuild 928 SHA256 eceb39a1d466a29295d7cf00adb4c46ba4448148a594685a82d4c36e439450d2 SHA512 e3ad5a034a0e2eb02c952752cdb7feafb99d6a19d7f20c522d15f208b7063fa7aee321b48b8fcef7a3e89bc1e54e02dda43186af8d2854c716e56fcae32ad9e5 WHIRLPOOL bb3ae989dc54bc533def19aa8379d9c50f1ff3652e08e17e6fa440fc3647997ae909cbefd68b23dfbc71521d6693b506696b4a91eb0aaebfad95d32481557a1b -EBUILD Bio-SamTools-1.370.0.ebuild 925 SHA256 4edfbcbddbb95eb86e30777f4fa7b6e49e6ea09d19e2efa6dec7399b6654e196 SHA512 4acff101c429c5ce2cf0801c5772a40fbdb8ca63202897bf69c50f4ccb810359275f8918110fc1b370db4e80e16a4171cd3ab297355afe0aa8d33732284ca651 WHIRLPOOL e320b351ed2e0370325ba2d924b9239a13d74602e8600a8ac3dfb2cb0f23edcc57c8384d82c6d1b4f2093d31613c7b44548618b7d3543a0a31c45fd1e1ceddf6 -MISC ChangeLog 1567 SHA256 ac1e46f6543029355ff167ccf558b574c153057c7c86b82312c919d78632632a SHA512 78081d3ba06a4b5ebfea7b33700e06ba063ba44f7edeff30c560727b2443f18cd1b74d27d416f5de28eb12e45d3f0fe6d93ccb06c967f2d31e33ea317980de57 WHIRLPOOL aa1800e822d0794991e156f516c35ade0e4f813a853bbd4f2a859a12ddcdf83d65db2f0ebc11658bbdb3ea51bff0297ef75ef0ebeea625a94d605c18d6963692 +EBUILD Bio-SamTools-1.370.0-r1.ebuild 1016 SHA256 ed62b1797e6cc87f9e8680c22ddd4757e3987bdfc7f4d0083f4771555c5b99df SHA512 78067a59e0e6a3da7db24ef061ad8549f5848e4efc1322a4f79f04deba42d1b2e5da32cf6a9032a42a843be732ebeea93f854816a7cb2e9c8b2bdfae6251d6b6 WHIRLPOOL b0c674c2da5bdbe36ac96246221e9550ed5ea719103c3da44d881148416c175066ea22fc73ffbb228b22337b0e9043696f016dc69e1a15bfa0519a7498abd6f7 +MISC ChangeLog 1772 SHA256 b762caeb9fd5b5c488a0ec0a9f4262027501edad873c0f0d5b4f13bbe5a1893e SHA512 f3eb880631218b4120430f28fd2cf0005e1c54c53e0cc5fef7c1bef150f3dc2475cfd1f52b09cb910972f090e992b9204d0e3abdf88a887ceb033affd1f0121f WHIRLPOOL c969931a246a93e03a5a254cfd3df99f6ef5032ca2ce7adcbf531b09705c325567c7ca0bea5fa34401e6a95f593520057048fb936129930ac11141382904d13c MISC metadata.xml 1543 SHA256 b1880dccfd13ab3423caf3c81ce48ead6e9426cf9d2a448a35f449068009b287 SHA512 a55ba47d7c2b7dee5200279307330eb9c1b2ba48e0ea70962e11a814f45fb99a5e748219009f1f54ac7a1420e919235ed18fa60607560790025b823f5a05fe43 WHIRLPOOL 63ce24137ccc59a4fccbd5ac6c0369f0b4c4d1b029303d6a63c1019d45a8836a6ca4fbbc77c68dff348a7b82fcf0642e4f20e9ff8feeda67b6f220a2fcd40975 -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.19 (GNU/Linux) -iEYEAREKAAYFAlD/wRkACgkQgAnW8HDreRbxCACfSZmUPoidflrIaP/Y2/xdfayx -gtIAoJXZiYNqYMXTpYAbXV+YX+E1O+G9 -=2Fgo +iEYEAREIAAYFAlEA6bsACgkQgAnW8HDreRawFACfbDbj7z91B585TKIaV/5ucFyv +wRkAoIJJZd3eU1wjLdE+LCd1h5ban2Zh +=R+PC -----END PGP SIGNATURE----- |