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| author |   Torsten Veller <tove@gentoo.org> | 2011-09-01 13:51:51 +0000 |
|---|---|---|
| committer | Torsten Veller <tove@gentoo.org> | 2011-09-01 13:51:51 +0000 |
| commit | 6cf5bcdf24630c297938328c86a8c5332cbc6ed6 (patch) | |
| tree | 5ba602bba20d112a32c55417558c9d75c13b7605 /dev-perl/Bio-SamTools | |
| parent | Version bump. Due to DLJ bundles no longer provided by Oracle, the package ch... (diff) | |
| download | historical-6cf5bcdf24630c297938328c86a8c5332cbc6ed6.tar.gz historical-6cf5bcdf24630c297938328c86a8c5332cbc6ed6.tar.bz2 historical-6cf5bcdf24630c297938328c86a8c5332cbc6ed6.zip | |
Change version scheme
Package-Manager: portage-2.2.0_alpha51/cvs/Linux x86_64
Diffstat (limited to 'dev-perl/Bio-SamTools')
| -rw-r--r-- | dev-perl/Bio-SamTools/Bio-SamTools-1.290.0.ebuild | 33 | ||||
| -rw-r--r-- | dev-perl/Bio-SamTools/ChangeLog | 7 |
2 files changed, 39 insertions, 1 deletions
diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.290.0.ebuild b/dev-perl/Bio-SamTools/Bio-SamTools-1.290.0.ebuild new file mode 100644 index 000000000000..92c8c76bd10f --- /dev/null +++ b/dev-perl/Bio-SamTools/Bio-SamTools-1.290.0.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.290.0.ebuild,v 1.1 2011/09/01 13:02:36 tove Exp $ + +EAPI=4 + +MODULE_AUTHOR=LDS +MODULE_VERSION=1.29 +inherit perl-module + +DESCRIPTION="Read SAM/BAM database files" + +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="sci-biology/bioperl + sci-biology/samtools" +RDEPEND="${DEPEND} + virtual/perl-ExtUtils-CBuilder + virtual/perl-Module-Build +" + +SRC_TEST=do + +src_prepare() { + sed -i -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \ + -e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' Build.PL || die + sed -i -e 's|#include "bam.h"|#include "bam/bam.h"|' \ + -e 's|#include "khash.h"|#include "bam/khash.h"|' \ + -e 's|#include "faidx.h"|#include "bam/faidx.h"|' lib/Bio/DB/Sam.xs || die + perl-module_src_prepare +} diff --git a/dev-perl/Bio-SamTools/ChangeLog b/dev-perl/Bio-SamTools/ChangeLog index 35caf5caf1c7..f18a6a3fce12 100644 --- a/dev-perl/Bio-SamTools/ChangeLog +++ b/dev-perl/Bio-SamTools/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for dev-perl/Bio-SamTools # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.1 2011/07/20 00:43:13 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.2 2011/09/01 13:02:36 tove Exp $ + +*Bio-SamTools-1.290.0 (01 Sep 2011) + + 01 Sep 2011; Torsten Veller <tove@gentoo.org> +Bio-SamTools-1.290.0.ebuild: + Change version scheme *Bio-SamTools-1.29 (20 Jul 2011) |