diff options
| author |   Michael Imhof <tantive@gentoo.org> | 2003-04-03 17:37:59 +0000 |
|---|---|---|
| committer | Michael Imhof <tantive@gentoo.org> | 2003-04-03 17:37:59 +0000 |
| commit | 68d427df65f09698c32bb91c86ced29920761d90 (patch) | |
| tree | 74e902f0e68ebe6351d19fe1fac36a5eb8fb137e /app-sci | |
| parent | Added busybox.links into scripts dir. Closes #18678. (diff) | |
| download | historical-68d427df65f09698c32bb91c86ced29920761d90.tar.gz historical-68d427df65f09698c32bb91c86ced29920761d90.tar.bz2 historical-68d427df65f09698c32bb91c86ced29920761d90.zip | |
Initial release. This ebuild was submitted by Gontran Zepeda <gontran@gontran.net>. Should close #18679.
Diffstat (limited to 'app-sci')
| -rw-r--r-- | app-sci/clustalw/ChangeLog | 10 | ||||
| -rw-r--r-- | app-sci/clustalw/clustalw-1.83.ebuild | 37 | ||||
| -rw-r--r-- | app-sci/clustalw/files/digest-clustalw-1.83 | 1 | ||||
| -rw-r--r-- | app-sci/clustalw/files/optimize-clustalw1.83.patch | 13 |
4 files changed, 61 insertions, 0 deletions
diff --git a/app-sci/clustalw/ChangeLog b/app-sci/clustalw/ChangeLog new file mode 100644 index 000000000000..1420a44e4ace --- /dev/null +++ b/app-sci/clustalw/ChangeLog @@ -0,0 +1,10 @@ +# Copyright 1999-2003 Gentoo Technologies, Inc. +# Distributed under the terms of the GNU General Public License v2 +# $ Header: $ + +*clustalw-1.83 (04 Apr 2003) + + 04 Apr 2003; Michael Imhof <tantive@gentoo.org> : + Initial release. + This ebuild was submitted by Gontran Zepeda <gontran@gontran.net>. + Should close #18679. diff --git a/app-sci/clustalw/clustalw-1.83.ebuild b/app-sci/clustalw/clustalw-1.83.ebuild new file mode 100644 index 000000000000..2af20e8d3e3f --- /dev/null +++ b/app-sci/clustalw/clustalw-1.83.ebuild @@ -0,0 +1,37 @@ +# Copyright 1999-2003 Gentoo Technologies, Inc. +# Distributed under the terms of the GNU General Public License v2 +# Author: Gontran Zepeda <gontran@gontran.net> +# $Header: /var/cvsroot/gentoo-x86/app-sci/clustalw/clustalw-1.83.ebuild,v 1.1 2003/04/03 17:37:59 tantive Exp $ + +DESCRIPTION="Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice." + +# ClustalW is ubiquitous, but this is the contact group. +HOMEPAGE="http://www.embl-heidelberg.de/~seqanal/" + +# One source. +SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/unix/clustalw/${PN}${PV}.UNIX.tar.gz" + +LICENSE="clustalw" +SLOT="0" +KEYWORDS="~x86 ~sparc ~ppc ~alpha" +IUSE="" +DEPEND="virtual/glibc" + +S=${WORKDIR}/${PN}${PV} + +src_unpack(){ + # let's use gentoo CFLAGS, et al. + unpack ${A} + cd ${S} + patch -p0 < ${FILESDIR}/optimize-${PN}${PV}.patch +} +src_compile() { + # clustalw uses only makefile. cool: stupid emake tricks. + EXTRA_EMAKE="-e ${CFLAGS}" + emake || die +} +src_install() { + # a mano + dobin clustalw + dodoc README clustalw.doc clustalw.ms clustalw_help +} diff --git a/app-sci/clustalw/files/digest-clustalw-1.83 b/app-sci/clustalw/files/digest-clustalw-1.83 new file mode 100644 index 000000000000..f2c2bf79faef --- /dev/null +++ b/app-sci/clustalw/files/digest-clustalw-1.83 @@ -0,0 +1 @@ +MD5 dc240277e5bb14ffc106d4a5fda87752 clustalw1.83.UNIX.tar.gz 166863 diff --git a/app-sci/clustalw/files/optimize-clustalw1.83.patch b/app-sci/clustalw/files/optimize-clustalw1.83.patch new file mode 100644 index 000000000000..b987c2399a24 --- /dev/null +++ b/app-sci/clustalw/files/optimize-clustalw1.83.patch @@ -0,0 +1,13 @@ +--- makefile.orig 2003-03-26 16:04:35.000000000 +0000 ++++ makefile 2003-03-26 16:05:42.000000000 +0000 +@@ -11,8 +11,8 @@ + HEADERS = general.h clustalw.h + + CC = cc +-CFLAGS = -c -O +-LFLAGS = -O -lm ++CFLAGS += -c ++LFLAGS = -lm + + clustalw : $(OBJECTS) amenu.o clustalw.o + $(CC) -o $@ $(OBJECTS) amenu.o clustalw.o $(LFLAGS) |