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author | Andrey Kislyuk <weaver@gentoo.org> | 2009-02-27 00:12:51 +0000 |
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committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-02-27 00:12:51 +0000 |
commit | f10e59984249be30c5b0d7360c012602d8106d15 (patch) | |
tree | 8173ca18658563596de8ed278a27c75a12068949 | |
parent | Import from Science overlay, bug 253364 (diff) | |
download | historical-f10e59984249be30c5b0d7360c012602d8106d15.tar.gz historical-f10e59984249be30c5b0d7360c012602d8106d15.tar.bz2 historical-f10e59984249be30c5b0d7360c012602d8106d15.zip |
Import from Science overlay
Package-Manager: portage-2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64
-rw-r--r-- | sci-biology/repeatmasker-libraries/ChangeLog | 26 | ||||
-rw-r--r-- | sci-biology/repeatmasker-libraries/metadata.xml | 5 | ||||
-rw-r--r-- | sci-biology/repeatmasker-libraries/repeatmasker-libraries-20090120.ebuild | 32 | ||||
-rw-r--r-- | sci-biology/repeatmasker/Manifest | 4 | ||||
-rw-r--r-- | sci-biology/trf/ChangeLog | 13 | ||||
-rw-r--r-- | sci-biology/trf/metadata.xml | 9 | ||||
-rw-r--r-- | sci-biology/trf/trf-4.0.ebuild | 35 |
7 files changed, 124 insertions, 0 deletions
diff --git a/sci-biology/repeatmasker-libraries/ChangeLog b/sci-biology/repeatmasker-libraries/ChangeLog new file mode 100644 index 000000000000..2df0cc200570 --- /dev/null +++ b/sci-biology/repeatmasker-libraries/ChangeLog @@ -0,0 +1,26 @@ +# ChangeLog for sci-biology/repeatmasker-libraries +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/repeatmasker-libraries/ChangeLog,v 1.1 2009/02/27 00:12:51 weaver Exp $ + +*repeatmasker-libraries-20090120 (26 Feb 2009) + + 26 Feb 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml, + +repeatmasker-libraries-20090120.ebuild: + Import from Science overlay + + 19 Feb 2009; weaver <weaver@gentoo.org> ChangeLog: + Version bump + + 08 Jul 2008; weaver <weaver@gentoo.org> + -repeatmasker-libraries-20061006.ebuild, + +repeatmasker-libraries-20080611.ebuild: + Version bump + + 27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> + +repeatmasker-libraries-20061006.ebuild: + Mass import from sunrise + + 20 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> + +repeatmasker-libraries-20061006.ebuild, +metadata.xml: + new package (bug 114096) + diff --git a/sci-biology/repeatmasker-libraries/metadata.xml b/sci-biology/repeatmasker-libraries/metadata.xml new file mode 100644 index 000000000000..7e3286984488 --- /dev/null +++ b/sci-biology/repeatmasker-libraries/metadata.xml @@ -0,0 +1,5 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>maintainer-wanted</herd> +</pkgmetadata> diff --git a/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20090120.ebuild b/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20090120.ebuild new file mode 100644 index 000000000000..5e9d37f5b75f --- /dev/null +++ b/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20090120.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20090120.ebuild,v 1.1 2009/02/27 00:12:51 weaver Exp $ + +DESCRIPTION="A special version of RepBase used by RepeatMasker" +HOMEPAGE="http://repeatmasker.org/" +SRC_URI="repeatmaskerlibraries-${PV}.tar.gz" + +LICENSE="as-is" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="" +RDEPEND="" + +S="${WORKDIR}/Libraries" + +RESTRICT="fetch" + +pkg_nofetch() { + einfo "Please register and download repeatmaskerlibraries-${PV}.tar.gz" + einfo 'at http://www.girinst.org/' + einfo '(select the "Repbase Update - RepeatMasker edition" link)' + einfo 'and place it in '${DISTDIR} +} + +src_install() { + dodir /usr/share/repeatmasker/Libraries + insinto /usr/share/repeatmasker/Libraries + doins "${S}/"* +} diff --git a/sci-biology/repeatmasker/Manifest b/sci-biology/repeatmasker/Manifest new file mode 100644 index 000000000000..16d4df08b289 --- /dev/null +++ b/sci-biology/repeatmasker/Manifest @@ -0,0 +1,4 @@ +DIST RepeatMasker-open-3-2-7.tar.gz 11398018 RMD160 63a79ea9146805cc1e7f4cca8b94903136bf2a0c SHA1 22ca2ea2369e1543d58c82954870e114e25c80b9 SHA256 3ceb21658f23780c345d27bb603ef407b953c59dce5b97436a578d28dcb7e477 +EBUILD repeatmasker-3.2.7.ebuild 1565 RMD160 4e4025dc55b2f1267a9c69fd1bb68dffe8f860e4 SHA1 fe3f519521e98aafa4443da564f3df6f2591377a SHA256 011c25e9f1f3685a9096b4ea51d511491512f1643206d962e6dfad54f03eea5a +MISC ChangeLog 788 RMD160 ad1fe4ff6c288710d80efd7d1a7ecf047b4fc95d SHA1 cefe2014e85e4a449fb15d7194267ad6fd292c5a SHA256 428691c9febde6456c143c098deacf44797fb6a72366000200739af2df82d9c0 +MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 diff --git a/sci-biology/trf/ChangeLog b/sci-biology/trf/ChangeLog new file mode 100644 index 000000000000..a7d6de7aa342 --- /dev/null +++ b/sci-biology/trf/ChangeLog @@ -0,0 +1,13 @@ +# ChangeLog for sci-biology/trf +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/trf/ChangeLog,v 1.1 2009/02/27 00:11:33 weaver Exp $ + +*trf-4.0 (26 Feb 2009) + + 26 Feb 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml, + +trf-4.0.ebuild: + Import from Science overlay + + 19 Feb 2009; weaver <weaver@gentoo.org> ChangeLog: + New package sci-biology/trf, ebuild written by me + diff --git a/sci-biology/trf/metadata.xml b/sci-biology/trf/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/trf/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> diff --git a/sci-biology/trf/trf-4.0.ebuild b/sci-biology/trf/trf-4.0.ebuild new file mode 100644 index 000000000000..a76010b6257a --- /dev/null +++ b/sci-biology/trf/trf-4.0.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/trf/trf-4.0.ebuild,v 1.1 2009/02/27 00:11:33 weaver Exp $ + +inherit eutils + +DESCRIPTION="Tandem Repeats Finder" +HOMEPAGE="http://tandem.bu.edu/trf/trf.html" +SRC_URI="http://tandem.bu.edu/trf/downloads/trf400.linux.exe" + +LICENSE="as-is" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="" +RDEPEND="" +# gtk? ( x11-libs/gtk+ ) x11-libs/pango[X] + +S="${WORKDIR}" + +src_unpack() { + cp "${DISTDIR}/trf400.linux.exe" "${S}" +} + +src_install() { + exeinto /opt/${PN} + doexe trf400.linux.exe || die + dosym /opt/${PN}/trf400.linux.exe /usr/bin/trf || die + # GTK version (http://tandem.bu.edu/trf/downloads/trf400.linuxgtk.exe) has broken linking + #if use gtk; then + # doexe trf400.linuxgtk.exe || die + # make_desktop_entry /opt/${PN}/trf400.linuxgtk.exe "Tandem Repeats Finder" || die + #fi +} |