Install lastex, #362525

Package-Manager: portage-2.2.0_alpha29/cvs/Linux x86_64

4 files changed, 71 insertions, 2 deletions

diff --git a/sci-biology/last/ChangeLog b/sci-biology/last/ChangeLog
index 3b4e015f7962..07e62371a151 100644
--- a/sci-biology/last/ChangeLog
+++ b/sci-biology/last/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/last
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/last/ChangeLog,v 1.12 2011/04/02 18:28:00 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/last/ChangeLog,v 1.13 2011/04/08 06:29:27 jlec Exp $
+
+*last-162-r1 (08 Apr 2011)
+
+  08 Apr 2011; Justin Lecher <jlec@gentoo.org> +files/162-ldflags.patch,
+  +last-162-r1.ebuild:
+  Install lastex, #362525
 
   02 Apr 2011; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
   drop old
diff --git a/sci-biology/last/Manifest b/sci-biology/last/Manifest
index 2a81eed6d2a5..68adf2e4f61d 100644
--- a/sci-biology/last/Manifest
+++ b/sci-biology/last/Manifest
@@ -1,6 +1,18 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+AUX 162-ldflags.patch 542 RMD160 5b6c5cdf442342eba1d34761dff544aeae0e7b28 SHA1 030dfa0add10f64133b616a9c06792e280298374 SHA256 1ea754c2be5184cc4f4b9c40adbb7860f30a2a326a3c2f9833c99539aefbbe8a
 DIST last-146.zip 334958 RMD160 a05556d0914dc10b1af48555417684dac8c12bd7 SHA1 772ac19f3ed87859ac8c87557ca23ad6146c837f SHA256 313aa49cea50abd13382c05e607c54d59281030da960c82f3dd76286cccf04b0
 DIST last-162.zip 349184 RMD160 1975d96c18cb78f1116c8627eb03898da4f1665b SHA1 588839e1d56ae9e66b31ca8f0000a4a8110b0d8f SHA256 f657cb415ddd0349c60dfcda45e3fb7b180f88141a819e670471b7b6f656649f
 EBUILD last-146.ebuild 726 RMD160 ea409715d93d36182268c044e222a36e0b60348b SHA1 6bc1d46e5f92e55e78f2521057c0b52c52d07977 SHA256 7cad7a23597763e42ef6b34b231562db7195c76ab81f5f7bd41820500bfb5d7d
+EBUILD last-162-r1.ebuild 798 RMD160 cecb21f7edb81e729678ca10216308fa46a381e0 SHA1 e82b6575ac12e410fb0bf1ad70f5fbd6ef9b3d5b SHA256 adc7c546446ec45821b099301c3f360cc65265c3013d5fc765e31051000a5143
 EBUILD last-162.ebuild 726 RMD160 496767db62cfe0626780db6373b72e2c0f1c843f SHA1 e8610b2253a221b817f9a7248a65f9bf4d042de5 SHA256 33f087a138fc7733383dceda49b4d37a75a849334391c78cb76e01daf1131bab
-MISC ChangeLog 1581 RMD160 0edff31fbd0f202c042b60e5edc159a95493c9c7 SHA1 d4e1e28e0d7d5b3faf761da5d2657fd27cdfab70 SHA256 21c634a41618c0114accc341023a67b8892ba608d4be9ebddc6d7e605cd8f408
+MISC ChangeLog 1730 RMD160 dd61fa07163c660abf29d679a7a894d30a9e0e3b SHA1 761a4dcd207c8103add713962303ba0ff494ba1d SHA256 5b68d7b125c466ca194f7c9538d4624a7d36ecee68bf9f618c0a32e478a0134d
 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.17 (GNU/Linux)
+
+iEYEARECAAYFAk2eq0wACgkQgAnW8HDreRb9SACgkWaIvun2Pb1FhOlhws4CZJhH
+awYAn3RKQ2W008JUi9V5d5jI9jdh2WRq
+=nWCR
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/last/files/162-ldflags.patch b/sci-biology/last/files/162-ldflags.patch
new file mode 100644
index 000000000000..e5dd3ee2234e
--- /dev/null
+++ b/sci-biology/last/files/162-ldflags.patch
@@ -0,0 +1,16 @@
+ src/makefile |    2 +-
+ 1 files changed, 1 insertions(+), 1 deletions(-)
+
+diff --git a/src/makefile b/src/makefile
+index e77ffa7..92e4575 100644
+--- a/src/makefile
++++ b/src/makefile
+@@ -51,7 +51,7 @@ lastal: $(ALSRC) $(ALINC) makefile $(OBJ)
+ 	$(CXX) $(STRICT) $(CXXFLAGS) -o $@ $(ALSRC) $(OBJ)
+ 
+ lastex: $(EXSRC) $(EXINC) makefile
+-	$(CXX) -Igumbel_params $(CXXFLAGS) -o $@ $(EXSRC)
++	$(CXX) $(STRICT) -Igumbel_params $(CXXFLAGS) -o $@ $(EXSRC)
+ 
+ $(OBJ): CA_code/*.c CA_code/*.h makefile
+ 	$(CC) $(CFLAGS) -c CA_code/lambda_calculator.c
diff --git a/sci-biology/last/last-162-r1.ebuild b/sci-biology/last/last-162-r1.ebuild
new file mode 100644
index 000000000000..1f288b98bc26
--- /dev/null
+++ b/sci-biology/last/last-162-r1.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/last/last-162-r1.ebuild,v 1.1 2011/04/08 06:29:27 jlec Exp $
+
+EAPI="2"
+
+inherit eutils toolchain-funcs
+
+DESCRIPTION="Genome-scale comparison of biological sequences"
+HOMEPAGE="http://last.cbrc.jp/"
+SRC_URI="http://last.cbrc.jp/archive/${P}.zip"
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+DEPEND="app-arch/unzip"
+RDEPEND=""
+
+src_prepare() {
+	epatch "${FILESDIR}"/${PV}-ldflags.patch
+}
+
+src_compile() {
+	emake -e -C src CXX="$(tc-getCXX)" \
+		STRICT="${LDFLAGS}" || die
+}
+
+src_install() {
+	dobin src/last{al,db,ex} || die
+	exeinto /usr/share/${PN}/scripts
+	doexe scripts/* || die
+	dodoc doc/*.txt ChangeLog.txt README.txt || die
+}