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authorAndrey Kislyuk <weaver@gentoo.org>2010-09-26 07:35:37 +0000
committerAndrey Kislyuk <weaver@gentoo.org>2010-09-26 07:35:37 +0000
commit2d64c312d110e896c23a98b0a48a3467275edea3 (patch)
treec59dc14cfc8bd222fc9f2b9101b5202b0aec6310
parentAdd ree18 target. Add missing dependency. (diff)
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Version bump
Package-Manager: portage-2.2_rc61/cvs/Linux x86_64
-rw-r--r--sci-biology/abyss/ChangeLog7
-rw-r--r--sci-biology/abyss/Manifest4
-rw-r--r--sci-biology/abyss/abyss-1.2.3.ebuild25
-rw-r--r--sci-biology/ncbi-tools++/Manifest14
4 files changed, 37 insertions, 13 deletions
diff --git a/sci-biology/abyss/ChangeLog b/sci-biology/abyss/ChangeLog
index 8a29da5e2b91..4ddd2bf44bfc 100644
--- a/sci-biology/abyss/ChangeLog
+++ b/sci-biology/abyss/ChangeLog
@@ -1,6 +1,11 @@
# ChangeLog for sci-biology/abyss
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.5 2010/06/23 05:19:31 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.6 2010/09/26 07:35:37 weaver Exp $
+
+*abyss-1.2.3 (26 Sep 2010)
+
+ 26 Sep 2010; Andrey Kislyuk <weaver@gentoo.org> +abyss-1.2.3.ebuild:
+ Version bump
*abyss-1.2.0 (23 Jun 2010)
diff --git a/sci-biology/abyss/Manifest b/sci-biology/abyss/Manifest
index 2b7e564a17fe..45113f8eab4d 100644
--- a/sci-biology/abyss/Manifest
+++ b/sci-biology/abyss/Manifest
@@ -1,4 +1,6 @@
DIST abyss-1.2.0.tar.gz 277121 RMD160 57a7cc7e58cbd4c174f12077ae471bad704928e5 SHA1 55cfe3d79a73a966b98d22f588e23053e27eebcf SHA256 4aa90c9b089267c2ed87a054c537b94fc1f4e9aa986cf4b8f95fc2e1b980d4c4
+DIST abyss-1.2.3.tar.gz 313587 RMD160 a8f9b54a8fc4ab58f372b25183e806abe5a7eea4 SHA1 cebe61a38f13ce822fb3bc719681858e31b8a6e7 SHA256 d4039cc4cd44ebdcbf3107e6d1e80380dfe3817c64a74d8ac64bc717f07e4fd5
EBUILD abyss-1.2.0.ebuild 690 RMD160 40b1380a97db9a9716cd3e723f9666d03f773ddc SHA1 c814bcbb0cd1a09230946c760ad30382934ba27d SHA256 fcbde8fb1f06080e0bfb62bffe80a40239a80d2a12fb58f22bb82294e6538bd0
-MISC ChangeLog 915 RMD160 bc3d2c4e1f32943e4ac74993acbbe597c5b87e10 SHA1 9bfbf7d72b0a45309906bbf96ba88d81d6e4f60e SHA256 57fc70f6ffff7058559a522d5a8ada7609815b4b07dfe7342390bf73408bbc9f
+EBUILD abyss-1.2.3.ebuild 690 RMD160 de6a4ddeb111cb08df2f550d748ab1bd64c7bbd6 SHA1 428f35750186eccd2b229a7bac93a4503dfdc3dc SHA256 d9af3bc011c6f06d073eaa157260bb7560e8fbe024b98a22c5d6a0dd0ff3bf4c
+MISC ChangeLog 1030 RMD160 473b17504d23a7f2c610c7a207748dc7c720d41d SHA1 29d60e1b27d81a07a71890711e4912c6c115b5db SHA256 d001b3b7dc813cab91f81d4e4f5be8f4503af61e3b07efd72f836bb5f492fe48
MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
diff --git a/sci-biology/abyss/abyss-1.2.3.ebuild b/sci-biology/abyss/abyss-1.2.3.ebuild
new file mode 100644
index 000000000000..be8ea6eebabd
--- /dev/null
+++ b/sci-biology/abyss/abyss-1.2.3.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.2.3.ebuild,v 1.1 2010/09/26 07:35:37 weaver Exp $
+
+EAPI="2"
+
+DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"
+HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss"
+SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz"
+
+LICENSE="abyss"
+SLOT="0"
+IUSE="+mpi"
+KEYWORDS="~amd64 ~x86"
+
+DEPEND="dev-cpp/sparsehash
+ mpi? ( virtual/mpi )"
+RDEPEND="${DEPEND}"
+
+# todo: --enable-maxk=N configure option
+# todo: fix automagic mpi toggling
+
+src_install() {
+ einstall || die
+}
diff --git a/sci-biology/ncbi-tools++/Manifest b/sci-biology/ncbi-tools++/Manifest
index 87c1f387877b..3b8dcf5d44b8 100644
--- a/sci-biology/ncbi-tools++/Manifest
+++ b/sci-biology/ncbi-tools++/Manifest
@@ -1,16 +1,8 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
AUX ncbi-tools++-2009.05.15-asneeded.patch 3620 RMD160 393db694f0824b0d47571e3b64250b8398c33e58 SHA1 541f00f4d2170d9bb4721468f1c350dcc92552bb SHA256 71a4b2040417a9bfaa7254b5c6668d09ec69f5836a372f1b2bbc938f41ff7657
AUX ncbi-tools++-2009.05.15-gcc44.patch 554 RMD160 57a23cbaad59b6011124f684db55f4ac2e4a43ab SHA1 7ed63addba554bf87a347d25ea2d4ea6b6552a1a SHA256 ddc2379ff636851e1bb4fb601930ee926c396819e06812b1ba76da001255d5c6
+DIST ncbi_cxx--Jun_15_2010.tar.gz 17297248 RMD160 35e2ffbe2f37856eb4368e7e98c48c2721848060 SHA1 43c007fb6b3a72389ca33e884c6abd7ad27dbbd0 SHA256 eb24230a9afe9bcf3c52aa6d5d9545dca04649a2569a1bb832ace54aec9d3c54
DIST ncbi_cxx--May_15_2009.tar.gz 13986626 RMD160 131a04d43056fd4d4fd1781d38a5c1b9e3089a13 SHA1 0cecad93774ce40b3455149b2c3538dfce032b85 SHA256 ccb86f2e33251580e23c94b8d2a4aa4832c278171ded29513f0c9859b303f1d8
EBUILD ncbi-tools++-2009.05.15-r6.ebuild 2861 RMD160 22529f1cc1deef1557fd4be48e3436a83cd8c48f SHA1 a7b463d309a19393cd9b1d5325f25aeaf20f633b SHA256 78445abf6420b85956289d33e1b1d9ffc1f72c00b7652a942f52c4662e48cf04
-MISC ChangeLog 3073 RMD160 4823e874a6fa53d57ab91b0275d5d5a83064b3bb SHA1 4377e43b6a258f87d73b3e48aa0c33e3334f7379 SHA256 0633c0f2d4f8d4d65673e33c9b94419e797b052607acee2c8e180f3b6b6cfb3b
+EBUILD ncbi-tools++-2010.06.15.ebuild 1614 RMD160 959785240442caea6977dbe1f6efd7bbaf107723 SHA1 097a0c03e754f2949b07f30e34c7e67e33d0edbb SHA256 5ee7d8346f77d820045772a0b06616e0e8cc2483ed3e018c7426ef782adbc222
+MISC ChangeLog 3216 RMD160 ee5733077db0a120813a03917012a341b25947b1 SHA1 dd5b4f6e8499f7db0aa70f6bbf13ca1b4ccdae5b SHA256 95b9fc34059f0b5191f58369ec8d0e490e191f76c8a9ef0248293e9ea2d6322c
MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
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