diff options
Diffstat (limited to 'sci-chemistry/balbes/files/1.0.0_p100317-makefile.patch')
| -rw-r--r-- | sci-chemistry/balbes/files/1.0.0_p100317-makefile.patch | 107 |
1 files changed, 107 insertions, 0 deletions
diff --git a/sci-chemistry/balbes/files/1.0.0_p100317-makefile.patch b/sci-chemistry/balbes/files/1.0.0_p100317-makefile.patch new file mode 100644 index 000000000000..da17240642d7 --- /dev/null +++ b/sci-chemistry/balbes/files/1.0.0_p100317-makefile.patch @@ -0,0 +1,107 @@ +diff --git a/makefile b/makefile +index baaceb5..85a7baf 100755 +--- a/makefile ++++ b/makefile +@@ -70,6 +70,15 @@ OBJDB_G = get_pdb_list.o + + #OBJDB_Z = blanc2mtz.o libutils.o + ++# incomplete targets: ++# dimer_search_db domain_search_db domain align3 ++all: search_db get_structure_db manage_db search_dm dom2ch \ ++ save_si get_pdb_list_db update_db \ ++ update_dom_db bl2mtz check_file_db fobs2cif sol_check \ ++ get_trns p2s check_cell alt_sg \ ++ align cell_list create_bins \ ++ get_pdb_list_db get_ch get_nm get_mod ++ + search_db: sdb_l + + get_structure_db: tdb_l +@@ -201,58 +210,58 @@ save_seg_id.o: save_seg_id.f + $(BLANC_FORT) -c save_seg_id.f + + sdb_l: $(OBJDB_S) +- $(BLANC_FORT) -o ../bin/search_DB $(OBJDB_S) ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/search_DB $(OBJDB_S) + tdb_l: $(OBJDB_T) +- $(BLANC_FORT) -o ../bin/get_structure_DB $(OBJDB_T) ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/get_structure_DB $(OBJDB_T) + mdb_l: $(OBJDB_M) +- $(BLANC_FORT) -o ../bin/manage_DB $(OBJDB_M) ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/manage_DB $(OBJDB_M) + mdm_l: $(OBJDB_MD) +- $(BLANC_FORT) -o ../bin/search_DOM $(OBJDB_MD) ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/search_DOM $(OBJDB_MD) + d2c_l: $(OBJDB_A) +- $(BLANC_FORT) -o ../bin/domain2chain $(OBJDB_A) ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/domain2chain $(OBJDB_A) + upd_l: $(OBJDB_U) +- $(BLANC_FORT) -o ../bin/update_DB $(OBJDB_U) ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/update_DB $(OBJDB_U) + dom_l: $(OBJDB_V) +- $(BLANC_FORT) -o ../bin/update_domain_DB $(OBJDB_V) ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/update_domain_DB $(OBJDB_V) + ddb_l: $(OBJDB_D) +- $(BLANC_FORT) -o ../bin/dimer_search $(OBJDB_D) ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/dimer_search $(OBJDB_D) + dmdb_l: $(OBJDB_N) +- $(BLANC_FORT) -o ../bin/domain_search $(OBJDB_N) ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/domain_search $(OBJDB_N) + gdb_l: $(OBJDB_G) +- $(BLANC_FORT) -o ../bin/get_pdb_list $(OBJDB_G) ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/get_pdb_list $(OBJDB_G) + b2m_l: blanc2mtz.o libutils.o +- $(BLANC_FORT) -o ../bin/blanc2mtz blanc2mtz.o libutils.o $(CLIB)/libccp4f.a $(CLIB)/libccp4c.a ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/blanc2mtz blanc2mtz.o libutils.o -lccp4f -lccp4c + f2c_l: f2cif.o libutils.o +- $(BLANC_FORT) -o ../bin/f2cif f2cif.o libutils.o ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/f2cif f2cif.o libutils.o + chf_l: check_file_DB.o libutils.o +- $(BLANC_FORT) -o ../bin/check_file_DB check_file_DB.o libutils.o ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/check_file_DB check_file_DB.o libutils.o + chc_l: check_cell_sg.o libutils.o +- $(BLANC_FORT) -o ../bin/check_cell_sg check_cell_sg.o libutils.o ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/check_cell_sg check_cell_sg.o libutils.o + asl_l: alt_sg_list.o libutils.o +- $(BLANC_FORT) -o ../bin/alt_sg_list alt_sg_list.o libutils.o ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/alt_sg_list alt_sg_list.o libutils.o + sc_l: $(OBJDB_C) +- $(BLANC_FORT) -o ../bin/solution_check $(OBJDB_C) ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/solution_check $(OBJDB_C) + gt_l: $(OBJDB_R) +- $(BLANC_FORT) -o ../bin/get_trans $(OBJDB_R) ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/get_trans $(OBJDB_R) + dmn_l: domain.o libutils.o +- $(BLANC_FORT) -o ../bin/domain domain.o libutils.o ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/domain domain.o libutils.o + pack: pdb_pack.o libutils.o +- $(BLANC_FORT) -o ../bin/pdb_pack pdb_pack.o libutils.o ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/pdb_pack pdb_pack.o libutils.o + p2s_l: $(OBJDB_P) +- $(BLANC_FORT) -o ../bin/pdb2s $(OBJDB_P) ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/pdb2s $(OBJDB_P) + aln_l: align_DB.o DB_subr.o libutils.o +- $(BLANC_FORT) -o ../bin/align_DB align_DB.o DB_subr.o libutils.o ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/align_DB align_DB.o DB_subr.o libutils.o + aln3_l: align_DB_new.o DB_subr.o libutils.o +- $(BLANC_FORT) -o ../bin/align_DB_new align_DB_new.o DB_subr.o libutils.o ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/align_DB_new align_DB_new.o DB_subr.o libutils.o + cell_l: create_cell_list.o DB_subr.o libutils.o +- $(BLANC_FORT) -o ../bin/create_cell_list create_cell_list.o DB_subr.o libutils.o ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/create_cell_list create_cell_list.o DB_subr.o libutils.o + getch_l: get_chain.o DB_subr.o libutils.o +- $(BLANC_FORT) -o ../bin/get_chain get_chain.o DB_subr.o libutils.o ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/get_chain get_chain.o DB_subr.o libutils.o + getnmr_l: get_nmr.o DB_subr.o libutils.o +- $(BLANC_FORT) -o ../bin/get_nmr get_nmr.o DB_subr.o libutils.o ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/get_nmr get_nmr.o DB_subr.o libutils.o + getmod_l: get_model.o libutils.o +- $(BLANC_FORT) -o ../bin/get_model get_model.o libutils.o ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/get_model get_model.o libutils.o + crb_l: create_binaries.o DB_subr.o libutils.o +- $(BLANC_FORT) -o ../bin/create_binaries create_binaries.o DB_subr.o libutils.o ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/create_binaries create_binaries.o DB_subr.o libutils.o + save_si_l: save_seg_id.o DB_subr.o libutils.o +- $(BLANC_FORT) -o ../bin/save_seg_id save_seg_id.o DB_subr.o libutils.o ++ $(BLANC_FORT) ${LDFLAGS} -o ../bin/save_seg_id save_seg_id.o DB_subr.o libutils.o |