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| author |   Robin H. Johnson <robbat2@gentoo.org> | 2015-08-08 13:49:04 -0700 |
|---|---|---|
| committer | Robin H. Johnson <robbat2@gentoo.org> | 2015-08-08 17:38:18 -0700 |
| commit | 56bd759df1d0c750a065b8c845e93d5dfa6b549d (patch) | |
| tree | 3f91093cdb475e565ae857f1c5a7fd339e2d781e /sci-biology/sibsim4 | |
| download | gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.tar.gz gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.tar.bz2 gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.zip | |
proj/gentoo: Initial commit
This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.
This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.
Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed
Diffstat (limited to 'sci-biology/sibsim4')
| -rw-r--r-- | sci-biology/sibsim4/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/sibsim4/metadata.xml | 8 | ||||
| -rw-r--r-- | sci-biology/sibsim4/sibsim4-0.20.ebuild | 36 |
3 files changed, 45 insertions, 0 deletions
diff --git a/sci-biology/sibsim4/Manifest b/sci-biology/sibsim4/Manifest new file mode 100644 index 000000000000..3a0be49f2116 --- /dev/null +++ b/sci-biology/sibsim4/Manifest @@ -0,0 +1 @@ +DIST SIBsim4-0.20.tar.gz 32118 SHA256 ee02ae5f678d6843cf3ba267140dfccf9648a60d1f01263ae70d405723a35463 SHA512 3802520095e83d3c691804b661696095a4198c4b2a16385c55ccdc8e4e836f82cc9c2251a5d37cb5918c2ee80aeb81737d751e6b065fbfe9c64f1aee3e0ea0c8 WHIRLPOOL b6117192170a7c8b6bcc441c8b31b392410116d25045203ce33e5274a0a65608de408626df5a29fddbbbe34973869b055603defd58d06cbc6240925556b63282 diff --git a/sci-biology/sibsim4/metadata.xml b/sci-biology/sibsim4/metadata.xml new file mode 100644 index 000000000000..cfcd5be131d0 --- /dev/null +++ b/sci-biology/sibsim4/metadata.xml @@ -0,0 +1,8 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <upstream> + <remote-id type="sourceforge">sibsim4</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-biology/sibsim4/sibsim4-0.20.ebuild b/sci-biology/sibsim4/sibsim4-0.20.ebuild new file mode 100644 index 000000000000..ecef6870dea4 --- /dev/null +++ b/sci-biology/sibsim4/sibsim4-0.20.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit toolchain-funcs + +DESCRIPTION="A rewrite and improvement upon sim4, a DNA-mRNA aligner" +HOMEPAGE="http://sibsim4.sourceforge.net/" +SRC_URI="mirror://sourceforge/${PN}/SIBsim4-${PV}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +IUSE="" +KEYWORDS="amd64 x86" + +DEPEND="" +RDEPEND="" + +S="${WORKDIR}/SIBsim4-${PV}" + +src_prepare() { + sed \ + -e 's/CFLAGS = /CFLAGS +=/' \ + -e '/^CC/s:=:?=:' \ + -e '/^OPT/d' \ + -e "s:-o:${LDFLAGS} -o:g" \ + -i "${S}/Makefile" || die + tc-export CC +} + +src_install() { + dobin SIBsim4 + doman SIBsim4.1 +} |