diff options
| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-07-12 16:51:39 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-07-12 16:51:39 +0200 |
| commit | 6b020466331bf69a623d04b7f30b7a6b3f78fd50 (patch) | |
| tree | 59f23607b19b3a3d0e43aa8dd46d11e51a0e90d6 /sci-biology/wgs_tools | |
| parent | sci-chemistry/gromacs: Add 2016 RC1 (diff) | |
| download | sci-6b020466331bf69a623d04b7f30b7a6b3f78fd50.tar.gz sci-6b020466331bf69a623d04b7f30b7a6b3f78fd50.tar.bz2 sci-6b020466331bf69a623d04b7f30b7a6b3f78fd50.zip | |
sci-biology/wgs_tools: add taxonomy-related info to NCBI SRA and BLAST+
Package-Manager: portage-2.2.28
Diffstat (limited to 'sci-biology/wgs_tools')
| -rw-r--r-- | sci-biology/wgs_tools/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/wgs_tools/metadata.xml | 12 | ||||
| -rw-r--r-- | sci-biology/wgs_tools/wgs_tools-9999.ebuild | 36 |
3 files changed, 50 insertions, 0 deletions
diff --git a/sci-biology/wgs_tools/Manifest b/sci-biology/wgs_tools/Manifest new file mode 100644 index 000000000..26de9f371 --- /dev/null +++ b/sci-biology/wgs_tools/Manifest @@ -0,0 +1,2 @@ +DIST taxid2tsa.pl 3125 SHA256 aecf00bf36cc60fba16e8102ba3f9b1b8a229afbcb8c081bf29d427eb2458ff9 SHA512 4272be49bf4669506fa7a65e31769b1dd3e6e1a1556872c3a7c4261a54ee162011b931b918b3308b2c558da3766d0822e69bfb75850781f5e5a3500f3eaaa10a WHIRLPOOL d910b6fcf33ce2e52b9634246f422cb35b0c7b7a07fe24de6219c1f30a7f29ee65c5d20481339b6ec065097e28ff87dbe1e26a37ba93060b639a6786ae29d288 +DIST taxid2wgs.pl 3126 SHA256 877e7ee33dc0fd1c412ac57d17461b4cce5e73dc176ea987437fb5ce26e1d232 SHA512 75b26481909f8a37b6ec44c16acc964618253db744501d6a402ee1ed68132cd62a928bdd40aaf34f0b8f7b01800be14d5e2cd2f3e828bf5f70a0d833fd49f621 WHIRLPOOL de5455fbf267fcfc1f0d34870c862587b7fd7365e513d87161283ab043930ea4bd9667e9eed6c529934b46d07c578a675a67027f87d1259175f6b52691a00b92 diff --git a/sci-biology/wgs_tools/metadata.xml b/sci-biology/wgs_tools/metadata.xml new file mode 100644 index 000000000..f68a1b6fa --- /dev/null +++ b/sci-biology/wgs_tools/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/wgs_tools/wgs_tools-9999.ebuild b/sci-biology/wgs_tools/wgs_tools-9999.ebuild new file mode 100644 index 000000000..d3c7656d3 --- /dev/null +++ b/sci-biology/wgs_tools/wgs_tools-9999.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +DESCRIPTION="Scripts for ncbi-tools++ and SRA postprocessing using taxonomy" +HOMEPAGE="ftp://ftp.ncbi.nih.gov/blast/WGS_TOOLS + http://www.ncbi.nlm.nih.gov/books/NBK279690/ + http://www.ncbi.nlm.nih.gov/genbank/wgs" +SRC_URI="ftp://ftp.ncbi.nih.gov/blast/WGS_TOOLS/taxid2tsa.pl + ftp://ftp.ncbi.nih.gov/blast/WGS_TOOLS/taxid2wgs.pl" + +LICENSE="all-rights-reserved" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + dev-lang/perl" + +src_install(){ + dobin *.pl + dodoc README* +} + +pkg_postinst(){ + einfo "These scripts are helpful for VDB-enabled blast+ applications" + einfo "and for tools from SRA toolkit sci-biology/sra_sdk or" + einfo "sci-biology/sra_toolkit-bin. They are not added to DEPENDENCIES" + einfo "yet until the packages are stable. Probably you want to download" + einfo "Please read http://www.ncbi.nlm.nih.gov/books/NBK158899/" + einfo "and unpack one of the prebuilt binaries from:" + einfo "https://github.com/ncbi/sra-tools/wiki/Downloads" +} |