Cleanup

svn path=/; revision=339

12 files changed, 0 insertions, 654 deletions

diff --git a/media-video/makemkv/Manifest b/media-video/makemkv/Manifest
deleted file mode 100644
index a44c844..0000000
--- a/media-video/makemkv/Manifest
+++ /dev/null
@@ -1,6 +0,0 @@
-AUX makemkv-1.7.2-makefile.linux.patch 654 RMD160 464dccd8aa87f7e54534e3534f921d3cff5feebb SHA1 859bd6b205346c6802dc73dc7acd9642ce81a77a SHA256 99bb83537e2be8bab736086faaa0c06c0c8e6274b5816bbc772eab1d672433cc
-DIST makemkv_v1.7.2_bin.tar.gz 5990443 RMD160 8ffc43809ee3508fecd3bc0f6b48010a97812a86 SHA1 73f4d24fe0fe39cc1ff0ede6d5d10b84c640a172 SHA256 68f612b64f05d04987f9f4190d80be3d3a43f51313bac98d1bcedb8ed7ea0b05
-DIST makemkv_v1.7.2_oss.tar.gz 471666 RMD160 ceac252e38e45360296be65d0cb81c09f02ae6f0 SHA1 3e49d0e4ef6a133831d4c4570e75575ac95bd63c SHA256 a2ae09da7347bd4cfc4ebfe1a82d853a719991d2a2ee47f5c59051ccb269f290
-EBUILD makemkv-1.7.2.ebuild 2249 RMD160 35373ee71428f9d6ae6d4e6b9214ba534b8bc336 SHA1 adee702c8a69817c1e3d8a2d36002f24589df844 SHA256 c7bf487d265f18d74fbdced549f5a57687160fd738b353721390eafa20601357
-MISC ChangeLog 290 RMD160 6c63f8fd81af37bac4c65f44345123ed76cb3701 SHA1 b6c134947b89267e5f5d13625246ac305f9598bd SHA256 db7c04d2bc4c62f7bc9c0024b9bc6c54241371c8e98df9dc2a0d789fc1f4f0df
-MISC metadata.xml 281 RMD160 8d2f06c351e0b0756ea539eb32e2faa8dec4b64a SHA1 9ee2c10cfadb609245eff08b108f809b1d0f1046 SHA256 d91256704dd7de0642182be6f861a9cdce239252bcd7567364dca852ef907b35
diff --git a/media-video/makemkv/files/makemkv-1.7.2-makefile.linux.patch b/media-video/makemkv/files/makemkv-1.7.2-makefile.linux.patch
deleted file mode 100644
index 4a545af..0000000
--- a/media-video/makemkv/files/makemkv-1.7.2-makefile.linux.patch
+++ /dev/null
@@ -1,20 +0,0 @@
---- makemkv_v1.7.2_oss/makefile.linux.orig	2012-02-10 07:22:18.373318016 -0600
-+++ makemkv_v1.7.2_oss/makefile.linux	2012-02-10 07:26:06.179324161 -0600
-@@ -8,7 +8,7 @@
- MOC=moc
- endif
- 
--CXXOPTS=-Os -D_GNU_SOURCE -D_linux_
-+CXXOPTS=-D_GNU_SOURCE -D_linux_
- 
- BUILDINFO_ARCH_NAME=$(shell $(GCC) -dumpmachine)
- BUILDINFO_BUILD_DATE=$(shell date)
-@@ -38,7 +38,7 @@
- 	install -D -m 644 makemkvgui/src/img/128/mkv_icon.png $(DESTDIR)$(PREFIX)/share/icons/hicolor/128x128/apps/makemkv.png
- 
- out/%: out/%.full
--	objcopy --strip-all --strip-debug --strip-unneeded --discard-all $< $@ 
-+	objcopy --discard-all $< $@ 
- 
- out/libdriveio.so.0.full:
- 	mkdir -p out
diff --git a/media-video/makemkv/makemkv-1.7.2.ebuild b/media-video/makemkv/makemkv-1.7.2.ebuild
deleted file mode 100644
index 7a899ad..0000000
--- a/media-video/makemkv/makemkv-1.7.2.ebuild
+++ /dev/null
@@ -1,73 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/media-video/makemkv/makemkv-1.6.16.ebuild,v 1.5 2011/12/03 00:44:41 beandog Exp $
-
-EAPI=3
-
-RESTRICT="mirror"
-
-inherit multilib eutils
-
-MY_P="makemkv_v${PV}_oss"
-MY_PB="makemkv_v${PV}_bin"
-
-DESCRIPTION="Tool for ripping Blu-Ray, HD-DVD and DVD discs and copying content to a Matroska container"
-HOMEPAGE="http://www.makemkv.com/"
-SRC_URI="http://www.makemkv.com/download/${MY_P}.tar.gz
-	http://www.makemkv.com/download/${MY_PB}.tar.gz"
-
-LICENSE="MakeMKV-EULA"
-SLOT="0"
-KEYWORDS="-* ~amd64 ~x86"
-IUSE=""
-
-DEPEND="x11-libs/qt-gui:4
-	dev-libs/openssl:0
-	media-libs/mesa
-	x11-libs/qt-dbus:4
-	sys-libs/zlib"
-RDEPEND="${DEPEND}"
-
-QA_PREBUILT="opt/bin/makemkvcon"
-
-src_prepare() {
-	epatch "${FILESDIR}/${P}-makefile.linux.patch"
-	cd "${MY_P}"
-}
-
-src_compile() {
-	cd "${MY_P}"
-	emake GCC="$(tc-getCC) ${CFLAGS} ${LDFLAGS}" -f makefile.linux || die "make failed"
-}
-
-src_install() {
-	# install oss package
-	cd "${MY_P}"
-	dolib.so out/libdriveio.so.0 || die "dolib.so out/libdriveio.so.0 died"
-	dolib.so out/libmakemkv.so.1 || die "dolib.so out/libmakemkv.so.1 died"
-	dosym libdriveio.so.0 /usr/$(get_libdir)/libdriveio.so.0.${PV} || die "dosym libdriveio.so.0 died "
-	dosym libdriveio.so.0 /usr/$(get_libdir)/libdriveio.so || die "dosym libdriveio.so.0 died "
-	dosym libmakemkv.so.1 /usr/$(get_libdir)/libmakemkv.so.1.${PV} || die "dosym libmakemkv.so.1 died"
-	dosym libmakemkv.so.1 /usr/$(get_libdir)/libmakemkv.so || die "dosym libmakemkv.so.1 died"
-	into /opt
-	dobin out/makemkv || die "dobin makemkv died"
-
-	newicon makemkvgui/src/img/128/mkv_icon.png ${PN}.png
-	make_desktop_entry ${PN} "MakeMKV" ${PN} "Qt;AudioVideo;Video"
-
-	# install bin package
-	cd "../${MY_PB}/bin"
-	if use x86; then
-		dobin i386/makemkvcon || die "dobin makemkvcon died"
-	elif use amd64; then
-		dobin amd64/makemkvcon || die "dobin makemkvcon died"
-	fi
-}
-
-pkg_postinst() {
-	elog "While MakeMKV is in beta mode, upstream has provided a license"
-	elog "to use if you do not want to purchase one."
-	elog ""
-	elog "See this forum thread for more information, including the key:"
-	elog "http://www.makemkv.com/forum2/viewtopic.php?f=5&t=1053"
-}
diff --git a/sci-chemistry/jmol/Manifest b/sci-chemistry/jmol/Manifest
deleted file mode 100644
index afda356..0000000
--- a/sci-chemistry/jmol/Manifest
+++ /dev/null
@@ -1,6 +0,0 @@
-AUX caffeine.xyz 1116 RMD160 92b432c6584cd927fa1bfb155ea41011ab7a82d8 SHA1 d0f35a447b333b8ea51c15ab0ac67d887556e43c SHA256 45a9afac0b247780595944a98f8e1076a7e7e0dbb3e02cb54cecb0764b1cb67f
-AUX index.html 328 RMD160 60d2a573c228e018a864fd7d9cfc7554264ccd6b SHA1 7ab256d768d3a4da43b5e497dfb1c3a53a8068a9 SHA256 8cba2c5eb7f25c0ecf23bc007eb61549a7d2177ac327db6c1e5f51f333ae2451
-AUX jmol-12.2.27-nointl.patch 13821 RMD160 4d6a6a598f4b550b6c2e3665c01b4f915d39c563 SHA1 2bc04f7a5e781f8628622a69f12d1f4a33b26140 SHA256 330a911405f00552d37a9c241c4a18b9d3e6812ce858933dbc4574df8248e345
-DIST Jmol-12.2.27-full.tar.gz 29493780 RMD160 e0f530e92ed079b1debf9fbd5c720ad19ba71977 SHA1 663a3a83a1fff373cea624d4cec4fdd71efcd505 SHA256 f2ca3b810ea16a488f6f57003d2a407c8ac040d610479a7ae6d95631157db801
-DIST jmol-selfSignedCertificate.store.tar 10240 RMD160 a6d4df5f108a2c13074190569b95d3310439ea57 SHA1 218fff84df0c542b634ba08ed2e82d3d3280a481 SHA256 416744934991ef4f1fa298c0afc8e855d43771de2f2278ed3fbc60f707ea46b2
-EBUILD jmol-12.2.27.ebuild 3122 RMD160 d2f11cd8ca0caa93d1a61ce8d4b8c4dcc3844449 SHA1 3adb087d63b0afb95b539936cd98768191e156d4 SHA256 c3475664390783f8a00aa462216dce7ef26286549ef0a81215688673d8694f27
diff --git a/sci-chemistry/jmol/files/caffeine.xyz b/sci-chemistry/jmol/files/caffeine.xyz
deleted file mode 100644
index f0325b0..0000000
--- a/sci-chemistry/jmol/files/caffeine.xyz
+++ /dev/null
@@ -1,26 +0,0 @@
-24
-Caffeine
-H      -3.3804130    -1.1272367     0.5733036
-N       0.9668296    -1.0737425    -0.8198227
-C       0.0567293     0.8527195     0.3923156
-N      -1.3751742    -1.0212243    -0.0570552
-C      -1.2615018     0.2590713     0.5234135
-C      -0.3068337    -1.6836331    -0.7169344
-C       1.1394235     0.1874122    -0.2700900
-N       0.5602627     2.0839095     0.8251589
-O      -0.4926797    -2.8180554    -1.2094732
-C      -2.6328073    -1.7303959    -0.0060953
-O      -2.2301338     0.7988624     1.0899730
-H       2.5496990     2.9734977     0.6229590
-C       2.0527432    -1.7360887    -1.4931279
-H      -2.4807715    -2.7269528     0.4882631
-H      -3.0089039    -1.9025254    -1.0498023
-H       2.9176101    -1.8481516    -0.7857866
-H       2.3787863    -1.1211917    -2.3743655
-H       1.7189877    -2.7489920    -1.8439205
-C      -0.1518450     3.0970046     1.5348347
-C       1.8934096     2.1181245     0.4193193
-N       2.2861252     0.9968439    -0.2440298
-H      -0.1687028     4.0436553     0.9301094
-H       0.3535322     3.2979060     2.5177747
-H      -1.2074498     2.7537592     1.7203047
diff --git a/sci-chemistry/jmol/files/index.html b/sci-chemistry/jmol/files/index.html
deleted file mode 100644
index 35a5d49..0000000
--- a/sci-chemistry/jmol/files/index.html
+++ /dev/null
@@ -1,14 +0,0 @@
-<html>
-  <head>
-    <title>Jmol Test Page</title>
-      <div align="center"> <b>All the Sugar and Twice the Caffeine.</b> <br><br>
-      <script src="./Jmol.js"></script>
-  </head>
-  <body>
-    <script>
-      jmolInitialize("./"); // REQUIRED
-      jmolApplet(400, "load ./caffeine.xyz");
-    </script></div>
-  </body>
-</html>
-
diff --git a/sci-chemistry/jmol/files/jmol-12.2.27-nointl.patch b/sci-chemistry/jmol/files/jmol-12.2.27-nointl.patch
deleted file mode 100644
index 0a43faa..0000000
--- a/sci-chemistry/jmol/files/jmol-12.2.27-nointl.patch
+++ /dev/null
@@ -1,330 +0,0 @@
---- orig-build.xml	2012-05-31 13:42:43.943062427 -0500
-+++ build.xml	2012-05-31 14:01:01.691982062 -0500
-@@ -52,8 +52,6 @@
- 

-   <property file="proxy.properties" />

- 

--  <import file="tools/build-i18n.xml"/>

--

-   <path id="project.class.path">

-     <fileset dir="${lib.dir}">

-       <include name="*.jar" />

-@@ -111,10 +109,6 @@
-           <srcfiles dir="doc/source"

-                     includes="JmolGuide.docbook.xml, guide/*.docbook.xml"/>

-         </uptodate>

--        <uptodate targetfile="build/doc/JmolUserGuide_fr/index.html">

--          <srcfiles dir="doc/source"

--                    includes="JmolGuide_fr.docbook.xml, guide/*_fr.docbook.xml"/>

--        </uptodate>

-       </and>

-     </condition>

- 

-@@ -124,14 +118,6 @@
-           <srcfiles dir="doc/source"

-                     includes="JmolHistory.xml,JmolHistoryToHtml.xsl,history/changes.xml" />

-         </uptodate>

--        <uptodate targetfile="build/doc/JmolHistory/ChangeLog_fr.html">

--          <srcfiles dir="doc/source"

--                    includes="JmolHistory_fr.xml,JmolHistoryToHtml.xsl,history/changes_fr.xml" />

--        </uptodate>

--        <uptodate targetfile="build/doc/JmolHistory/ChangeLog_nl.html">

--          <srcfiles dir="doc/source"

--                    includes="JmolHistory_nl.xml,JmolHistoryToHtml.xsl,history/changes_nl.xml" />

--        </uptodate>

-       </and>

-     </condition>

-     

-@@ -141,14 +127,6 @@
-           <srcfiles dir="doc/source"

-                     includes="JmolDevelopersGuide.docbook.xml"/>

-         </uptodate>

--        <uptodate targetfile="build/doc/JmolDevelopersGuide_fr.html">

--          <srcfiles dir="doc/source"

--                    includes="JmolDevelopersGuide_fr.docbook.xml"/>

--        </uptodate>

--        <uptodate targetfile="build/doc/JmolDevelopersGuide_de.html">

--          <srcfiles dir="doc/source"

--                    includes="JmolDevelopersGuide_de.docbook.xml"/>

--        </uptodate>

-       </and>

-     </condition>

- 

-@@ -158,14 +136,6 @@
-           <srcfiles dir="doc/source"

-                     includes="JmolAppletGuide.docbook.xml, applet/*.docbook.xml"/>

-         </uptodate>

--        <uptodate targetfile="build/doc/JmolAppletGuide_fr.html">

--          <srcfiles dir="doc/source"

--                    includes="JmolAppletGuide_fr.docbook.xml, applet/*_fr.docbook.xml"/>

--        </uptodate>

--        <uptodate targetfile="build/doc/JmolAppletGuide_de.html">

--          <srcfiles dir="doc/source"

--                    includes="JmolAppletGuide_de.docbook.xml"/>

--        </uptodate>

-       </and>

-     </condition>

- 

-@@ -388,17 +358,12 @@
-   </target>

- 

-   <target name="jar" id="jar"

--          depends="init,classes,jmolGuide,jmolHistory,jmolDevelopersGuide,libjars,main-i18n">

-+          depends="init,classes,jmolGuide,jmolHistory,jmolDevelopersGuide,libjars">

-     <copy todir="${classes.dir}/org/openscience/jmol/Data/guide" >

-       <fileset dir="build/doc/JmolUserGuide">

-         <include name="**/*.html" />

-       </fileset>

-     </copy>

--    <copy todir="${classes.dir}/org/openscience/jmol/Data/guide_fr" >

--      <fileset dir="build/doc/JmolUserGuide_fr">

--        <include name="**/*.html" />

--      </fileset>

--    </copy>

-     <copy todir="${classes.dir}/org/openscience/jmol/Data" >

-       <fileset dir="build/doc/JmolHistory">

-         <include name="**/*.html" />

-@@ -603,18 +568,6 @@
-       <fileset dir="${appletjars.dir}" includes="**/*"/>

-     </jar>

- 

--    <for list="${all.JmolApplet.languages}" delimiter=","

--         param="current.Jmol.language">

--      <sequential>

--        <jar destfile="${jmol.applet.build.dir}/JmolApplet0_i18n_@{current.Jmol.language}.jar"

--             manifest="manifest/applet_i18n.txt" >

--          <fileset dir="${applet.classes.dir}">

--            <include name="org/jmol/translation/JmolApplet/@{current.Jmol.language}/**" />

--          </fileset>

--        </jar>

--      </sequential>

--    </for>

--

-     <jar destfile="${jmol.applet.build.dir}/JmolApplet0_Minimize.jar" manifest="manifest/applet.txt">

-       <fileset dir="${applet.classes.dir}">

-         <include name="org/jmol/minimize/**" />

-@@ -729,7 +682,6 @@
-         <include name="org/jmol/constant/**" />

-         <include name="org/jmol/g3d/**" />

-         <include name="org/jmol/geodesic/**" />

--        <include name="org/jmol/i18n/**" />

-         <include name="org/jmol/modelset/**" />

-         <include name="org/jmol/script/**" />

-         <include name="org/jmol/shape/**" />

-@@ -755,7 +707,6 @@
-         <pathelement path="${jmol.applet.build.dir}/JmolApplet0_ShapeSurface.jar" />

-         <pathelement path="${jmol.applet.build.dir}/JmolApplet0_Smiles.jar" />

-         <pathelement path="${jmol.applet.build.dir}/JmolApplet0_Symmetry.jar" />

--        <fileset dir="${jmol.applet.build.dir}" includes="JmolApplet0_i18n_*.jar" />

-       </indexjars>

-     </jar>

-     <!-- changes to this must be replicated below for the signed applet -->

-@@ -868,16 +819,6 @@
-              keystore="selfSignedCertificate/selfSignedCertificate.store"

-              storepass="selfSignedCertificate" alias="selfSignedCertificate" />

- 

--    <for list="${all.JmolApplet.languages}" delimiter=","

--         param="current.Jmol.language">

--      <sequential>

--      	<signjar jar="${jmol.applet.build.dir}/JmolApplet0_i18n_@{current.Jmol.language}.jar"

--                 signedjar="${jmol.applet.build.dir}/JmolAppletSigned0_i18n_@{current.Jmol.language}.jar"

--                 keystore="selfSignedCertificate/selfSignedCertificate.store"

--                 storepass="selfSignedCertificate" alias="selfSignedCertificate" />

--      </sequential>

--    </for>

--

-     <!-- vvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvv -->

-     <!-- this one must be treated specially because of jar indexing

-          we cannot simply rename the jar file, because the index has

-@@ -905,7 +846,6 @@
- 		<include name="org/jmol/shape/**" />

- 		<include name="org/jmol/viewer/**" />

- 		<include name="org/jmol/util/**" />

--		<include name="org/jmol/i18n/**" />

-       </fileset>    	

-       <indexjars>

-         <pathelement path="${jmol.applet.build.dir}/JmolAppletSigned0_Console.jar" />

-@@ -924,7 +864,6 @@
-         <pathelement path="${jmol.applet.build.dir}/JmolAppletSigned0_ShapeSurface.jar" />

-         <pathelement path="${jmol.applet.build.dir}/JmolAppletSigned0_Smiles.jar" />

-         <pathelement path="${jmol.applet.build.dir}/JmolAppletSigned0_Symmetry.jar" />

--        <fileset dir="${jmol.applet.build.dir}" includes="JmolAppletSigned0_i18n_*.jar" />

-       </indexjars>

-     </jar>

-     <signjar jar="${jmol.applet.build.dir}/JmolAppletSigned0.jar"

-@@ -963,18 +902,6 @@
-       </fileset>

-     </jar>

- 

--    <for list="${all.JmolApplet.languages}" delimiter=","

--         param="current.Jmol.language">

--      <sequential>

--        <jar destfile="${jmol.applet.build.dir}/JmolApplet0_i18n_@{current.Jmol.language}.jar"

--             manifest="manifest/applet_i18n.txt" >

--          <fileset dir="${applet.classes.dir}">

--            <include name="org/jmol/translation/JmolApplet/@{current.Jmol.language}/**" />

--          </fileset>

--        </jar>

--      </sequential>

--    </for>

--

-     <jar destfile="${jmol.applet.build.dir}/JmolApplet0_Minimize.jar" manifest="manifest/applet.txt">

-       <fileset dir="${applet.classes.dir}">

-         <include name="org/jmol/minimize/**" />

-@@ -1088,7 +1015,6 @@
-         <include name="org/jmol/constant/**" />

-         <include name="org/jmol/g3d/**" />

-         <include name="org/jmol/geodesic/**" />

--        <include name="org/jmol/i18n/**" />

-         <include name="org/jmol/modelset/**" />

-         <include name="org/jmol/script/**" />

-         <include name="org/jmol/shape/**" />

-@@ -1114,7 +1040,6 @@
-         <pathelement path="${jmol.applet.build.dir}/JmolApplet0_ShapeSurface.jar" />

-         <pathelement path="${jmol.applet.build.dir}/JmolApplet0_Smiles.jar" />

-         <pathelement path="${jmol.applet.build.dir}/JmolApplet0_Symmetry.jar" />

--        <fileset dir="${jmol.applet.build.dir}" includes="JmolApplet0_i18n_*.jar" />

-       </indexjars>

-     </jar>

-     <!-- changes to this must be replicated below for the signed applet -->

-@@ -1123,7 +1048,7 @@
-   </target>

- 

-   <target name="dist" id="dist"

--          depends="doc,main-i18n,main,signed-applet">

-+          depends="doc,main,signed-applet">

-     <!-- first build binary distribution -->

-     <delete dir="build/dist/jmol-${version}"/>

-     <mkdir dir="build/dist/jmol-${version}"/>

-@@ -1183,7 +1108,6 @@
-       <fileset dir=".">

-         <include name="applet.classes" />

-         <include name="build.xml" />

--        <include name="build-i18n.xml" />

-       </fileset>

-     </copy>

- 

-@@ -1278,7 +1202,6 @@
-       <fileset dir=".">

-         <include name="apisio.classes" />

-         <include name="build.xml" />

--        <include name="build-i18n.xml" />

-       </fileset>

-     </copy>

- 

-@@ -1374,7 +1297,7 @@
-   <target name="xclean" id="xclean">

-   </target>

- 

--  <target name="spotless" id="spotless" depends="clean,spotless-i18n">

-+  <target name="spotless" id="spotless" depends="clean">

-     <delete dir="build"/>

-     <delete dir="${javadoc.dir}"/>

-     <delete dir="packaging/rpm/dist"/>

-@@ -1438,16 +1361,6 @@
-       <arg value="../../../doc/source/JmolGuide.docbook.xml" />

-       <arg value="../../${docbook-xsl}/html/chunk.xsl" />

-     </java>

--    <echo message="Generating user's guide (fr)" />

--    <mkdir dir="build/doc/JmolUserGuide_fr" />

--    <java fork="true" dir="build/doc/JmolUserGuide_fr"

--          classname="com.icl.saxon.StyleSheet"

--          classpath="${lib.dir}/saxon.jar" >

--      <jvmarg value="${proxyHost}" />

--      <jvmarg value="${proxyPort}" />

--      <arg value="../../../doc/source/JmolGuide_fr.docbook.xml" />

--      <arg value="../../${docbook-xsl}/html/chunk.xsl" />

--    </java>

-   </target>

- 

-   <target name="jmolHistory" id="jmolHistory"

-@@ -1462,26 +1375,6 @@
-       <arg value="../../../doc/source/JmolHistory.xml" />

-       <arg value="../../../doc/source/JmolHistoryToHtml.xsl" />

-     </java>

--    <echo message="Generating history of changes (fr)" />

--    <java fork="true" dir="build/doc/JmolHistory"

--          classname="com.icl.saxon.StyleSheet"

--          classpath="${lib.dir}/saxon.jar" >

--      <arg value="-o" />

--      <arg value="ChangeLog_fr.html" />

--      <arg value="../../../doc/source/JmolHistory_fr.xml" />

--      <arg value="../../../doc/source/JmolHistoryToHtml.xsl" />

--      <arg value="lang=fr" />

--    </java>

--    <echo message="Generating history of changes (nl)" />

--    <java fork="true" dir="build/doc/JmolHistory"

--          classname="com.icl.saxon.StyleSheet"

--          classpath="${lib.dir}/saxon.jar" >

--      <arg value="-o" />

--      <arg value="ChangeLog_nl.html" />

--      <arg value="../../../doc/source/JmolHistory_nl.xml" />

--      <arg value="../../../doc/source/JmolHistoryToHtml.xsl" />

--      <arg value="lang=nl" />

--    </java>

-   </target>

- 

-   <target name="jmolDevelopersGuide" id="jmolDevelopersGuide"

-@@ -1495,24 +1388,6 @@
-       <arg value="../../doc/source/JmolDevelopersGuide.docbook.xml" />

-       <arg value="../${docbook-xsl}/html/docbook.xsl" />

-     </java>

--    <echo message="Generating developer's guide (fr)" />

--    <java fork="true" dir="build/doc"

--          classname="com.icl.saxon.StyleSheet"

--          classpath="${lib.dir}/saxon.jar" >

--      <arg value="-o" />

--      <arg value="JmolDevelopersGuide_fr.html" />

--      <arg value="../../doc/source/JmolDevelopersGuide_fr.docbook.xml" />

--      <arg value="../${docbook-xsl}/html/docbook.xsl" />

--    </java>

--    <echo message="Generating developer's guide (de)" />

--    <java fork="true" dir="build/doc"

--          classname="com.icl.saxon.StyleSheet"

--          classpath="${lib.dir}/saxon.jar" >

--      <arg value="-o" />

--      <arg value="JmolDevelopersGuide_de.html" />

--      <arg value="../../doc/source/JmolDevelopersGuide_de.docbook.xml" />

--      <arg value="../${docbook-xsl}/html/docbook.xsl" />

--    </java>

-   </target>

- 

-   <target name="jmolAppletGuide" id="jmolAppletGuide" depends="initdoc"

-@@ -1526,24 +1401,6 @@
-       <arg value="../../doc/source/JmolAppletGuide.docbook.xml" />

-       <arg value="../${docbook-xsl}/html/docbook.xsl" />

-     </java>

--    <echo message="Generating applet guide (fr)" />

--    <java fork="true" dir="build/doc"

--          classname="com.icl.saxon.StyleSheet"

--          classpath="${lib.dir}/saxon.jar" >

--      <arg value="-o" />

--      <arg value="JmolAppletGuide_fr.html" />

--      <arg value="../../doc/source/JmolAppletGuide_fr.docbook.xml" />

--      <arg value="../${docbook-xsl}/html/docbook.xsl" />

--    </java>

--    <echo message="Generating applet guide (de)" />

--    <java fork="true" dir="build/doc"

--          classname="com.icl.saxon.StyleSheet"

--          classpath="${lib.dir}/saxon.jar" >

--      <arg value="-o" />

--      <arg value="JmolAppletGuide_de.html" />

--      <arg value="../../doc/source/JmolAppletGuide_de.docbook.xml" />

--      <arg value="../${docbook-xsl}/html/docbook.xsl" />

--    </java>

-   </target>

- 

-   <target name="test" id="test" depends="main,compile-tests">

-@@ -1575,12 +1432,4 @@
-     <jar destfile="${tests.dir}/Tests.jar" basedir="${test-classes.dir}" />

-   </target>

- 

--  <!-- i18n stuff -->

--  <target name="main-i18n" depends="classes">

--    <ant antfile="tools/build-i18n.xml" target="main-i18n"/>

--  </target>

--  <target name="spotless-i18n">

--    <ant antfile="tools/build-i18n.xml" target="spotless-i18n"/>

--  </target>

--

- </project>

diff --git a/sci-chemistry/jmol/jmol-12.2.27.ebuild b/sci-chemistry/jmol/jmol-12.2.27.ebuild
deleted file mode 100644
index 5c80596..0000000
--- a/sci-chemistry/jmol/jmol-12.2.27.ebuild
+++ /dev/null
@@ -1,120 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=1
-WEBAPP_OPTIONAL="yes"
-
-inherit eutils webapp java-pkg-2 java-ant-2
-
-MY_P="Jmol"
-
-DESCRIPTION="Jmol is a java molecular viever for 3-D chemical structures."
-SRC_URI="
-	mirror://sourceforge/${PN}/${MY_P}-${PV}-full.tar.gz
-	http://dev.gentoo.org/~jlec/distfiles/${PN}-selfSignedCertificate.store.tar"
-
-HOMEPAGE="http://jmol.sourceforge.net/"
-KEYWORDS="~x86 ~amd64"
-LICENSE="LGPL-2.1"
-
-IUSE="client-only vhosts"
-
-WEBAPP_MANUAL_SLOT="yes"
-SLOT="0"
-
-COMMON_DEP="dev-java/commons-cli
-	dev-java/itext:0
-	sci-libs/jmol-acme
-	sci-libs/vecmath-objectclub
-	sci-libs/naga"
-RDEPEND=">=virtual/jre-1.5
-	${COMMON_DEP}"
-DEPEND=">=virtual/jdk-1.5
-	dev-java/saxon:6.5
-	!client-only? ( ${WEBAPP_DEPEND} )
-	${COMMON_DEP}"
-
-pkg_setup() {
-
-	use client-only || webapp_pkg_setup
-	java-pkg-2_pkg_setup
-}
-
-src_unpack() {
-
-	unpack ${A}
-	cd "${S}"
-
-	epatch "${FILESDIR}"/${P}-nointl.patch
-
-	rm -v "${S}"/*.jar "${S}"/plugin-jars/*.jar || die
-	cd "${S}/jars"
-
-# We still have to use netscape.jar on amd64 until a nice way to include plugin.jar comes along.
-	if use amd64; then
-		mv -v netscape.jar netscape.tempjar || die "Failed to move netscape.jar."
-		rm -v *.jar *.tar.gz || die "Failed to remove jars."
-		mv -v netscape.tempjar netscape.jar || die "Failed to move netscape.tempjar."
-	fi
-
-	java-pkg_jar-from vecmath-objectclub vecmath-objectclub.jar vecmath1.2-1.14.jar
-	java-pkg_jar-from itext iText.jar itext-1.4.5.jar
-	java-pkg_jar-from jmol-acme jmol-acme.jar Acme.jar
-	java-pkg_jar-from commons-cli-1 commons-cli.jar commons-cli-1.0.jar
-	java-pkg_jar-from naga
-	java-pkg_jar-from saxon-6.5 saxon.jar
-
-	mkdir -p "${S}/build/appjars" || die
-}
-
-src_compile() {
-	# prevent absorbing dep's classes
-	eant -Dlibjars.uptodate=true main
-}
-
-src_install() {
-
-	java-pkg_dojar build/Jmol.jar
-	dohtml -r  build/doc/* || die "Failed to install html docs."
-	dodoc *.txt doc/*license* || die "Failed to install licenses."
-
-	java-pkg_dolauncher ${PN} --main org.openscience.jmol.app.Jmol \
-		--java_args "-Xmx512m"
-
-	if ! use client-only ; then
-		webapp_src_preinst || die "Failed webapp_src_preinst."
-		cmd="cp Jmol.js build/Jmol.jar "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
-		|| die "${cmd} failed."
-		cmd="cp build/JmolApplet*.jar "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
-		|| die "${cmd} failed."
-		cmd="cp applet.classes "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
-		|| die "${cmd} failed."
-		cmd="cp -r build/classes/* "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
-		|| die "${cmd} failed."
-		cmd="cp -r build/appletjars/* "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
-		|| die "${cmd} failed."
-		cmd="cp "${FILESDIR}"/caffeine.xyz "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
-		|| die "${cmd} failed."
-		cmd="cp "${FILESDIR}"/index.html "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
-		|| die "${cmd} failed."
-
-		webapp_src_install || die "Failed running webapp_src_install"
-	fi
-}
-
-pkg_postinst() {
-
-	if ! use client-only ; then
-		webapp_pkg_postinst || die "webapp_pkg_postinst failed"
-	fi
-
-}
-
-pkg_prerm() {
-
-	if ! use client-only ; then
-		webapp_pkg_prerm || die "webapp_pkg_prerm failed"
-	fi
-
-}
diff --git a/sci-libs/naga/ChangeLog b/sci-libs/naga/ChangeLog
deleted file mode 100644
index 5cf9787..0000000
--- a/sci-libs/naga/ChangeLog
+++ /dev/null
@@ -1,14 +0,0 @@
-# ChangeLog for sci-libs/naga
-# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*naga-2.1 (31 May 2012)
-
-  31 May 2012; Jeff Gardner <je_fro@gentoo.org> +naga-2.1.ebuild:
-  Add older version, supports Jmol.
-
-*naga-3.0 (30 May 2012)
-
-  30 May 2012; Jeff Gardner <je_fro@gentoo.org> +naga-3.0.ebuild:
-  Initial ebuild - dependency for new Jmol.
-
diff --git a/sci-libs/naga/Manifest b/sci-libs/naga/Manifest
deleted file mode 100644
index e4a3b7d..0000000
--- a/sci-libs/naga/Manifest
+++ /dev/null
@@ -1,3 +0,0 @@
-EBUILD naga-2.1.ebuild 591 RMD160 d06971567e4ff00520b36a77098ead399536a5c0 SHA1 53e19fa72038b2f6b1ebabb23f1cb27ee07ecd29 SHA256 83a0eb91324317332e5d0819c0a12a6345d12ce8cfaa168cc953014fe0754fe8
-MISC ChangeLog 378 RMD160 c3995eb59b80fef5d249bbf3063d49ee0900d699 SHA1 5848423d1c159c180199cca740de4494a039ecbe SHA256 a12f9ae7dc4216c9deef15db5f7244eecd2842ede4ab0268664cd737c5f1130d
-MISC metadata.xml 323 RMD160 2174743fad48617537ae62516c80a9007b6e369a SHA1 07d234c82e9fa7ce2611958b1dff1199720705c6 SHA256 28113df115a6185cd10fb09ea7098095ffee8e993dfc8ae97600bee56e8542be
diff --git a/sci-libs/naga/metadata.xml b/sci-libs/naga/metadata.xml
deleted file mode 100644
index ce4f93d..0000000
--- a/sci-libs/naga/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer>
-		<email>je_fro@gentoo.org</email>
-		<name>Jeff Gardner</name>
-	</maintainer>
-	<longdescription lang="en">
-	Simplified Java NIO asynchronous sockets
-	</longdescription>
-</pkgmetadata>
-
diff --git a/sci-libs/naga/naga-2.1.ebuild b/sci-libs/naga/naga-2.1.ebuild
deleted file mode 100644
index 588e30e..0000000
--- a/sci-libs/naga/naga-2.1.ebuild
+++ /dev/null
@@ -1,30 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-EAPI=4
-
-inherit subversion java-pkg-2 java-ant-2
-
-ESVN_REPO_URI="http://naga.googlecode.com/svn/trunk@57"
-MY_PV=${PV//./_}
-MY_PVR="${MY_PV}-r43"
-
-DESCRIPTION="Simplified Java NIO asynchronous sockets"
-HOMEPAGE="http://code.google.com/p/naga/"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-DEPEND=">=virtual/jdk-1.5
-	dev-java/ant-core"
-RDEPEND=">=virtual/jre-1.5"
-
-src_compile() {
-	eant build
-}
-
-src_install() {
-	java-pkg_newjar _DIST/${PN}-${MY_PVR}.jar ${PN}.jar
-}