diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/vienna-rna/Manifest | 16 | ||||
| -rw-r--r-- | sci-biology/vienna-rna/files/digest-vienna-rna-1.6 | 1 | ||||
| -rw-r--r-- | sci-biology/vienna-rna/vienna-rna-1.6.ebuild | 46 |
3 files changed, 4 insertions, 59 deletions
diff --git a/sci-biology/vienna-rna/Manifest b/sci-biology/vienna-rna/Manifest index 040414713352..30a36f2e13f6 100644 --- a/sci-biology/vienna-rna/Manifest +++ b/sci-biology/vienna-rna/Manifest @@ -1,6 +1,5 @@ DIST ViennaRNA-1.4.tar.gz 483047 DIST ViennaRNA-1.6.1.tar.gz 1149127 RMD160 37e4719e7ca03ced354976fa83f38d5f96776531 SHA1 afb35731c39893b17a21653a96ba5b3e39340934 SHA256 8036b6a562ec898dab4144cb5f18b42ff7c4290875572d05e7059b1ca2d5ddfd -DIST ViennaRNA-1.6.tar.gz 1159849 EBUILD vienna-rna-1.4.ebuild 2407 RMD160 1697ad7c9ea368107c2958429cc53ab35250d41c SHA1 0fabbd6bb11b7d1a5751245ec99a6c319e5a40a2 SHA256 c56b188f15a432c0749e075dab9cdc0a4a0631628b3992027d4718ed3dacd0e6 MD5 3bb50b8cfbc48270128a17049473d2d4 vienna-rna-1.4.ebuild 2407 RMD160 1697ad7c9ea368107c2958429cc53ab35250d41c vienna-rna-1.4.ebuild 2407 @@ -9,14 +8,10 @@ EBUILD vienna-rna-1.6.1.ebuild 1582 RMD160 ff7ac39b7188aba16ce26ed80187457acd83e MD5 5d374dc8496c8c6ef4973e2b92c2a753 vienna-rna-1.6.1.ebuild 1582 RMD160 ff7ac39b7188aba16ce26ed80187457acd83e43a vienna-rna-1.6.1.ebuild 1582 SHA256 2a5639eeb1e65f88689503c0d45a53af340416eaebb79253800d3f289bb77058 vienna-rna-1.6.1.ebuild 1582 -EBUILD vienna-rna-1.6.ebuild 1580 RMD160 42e85e92352a27c412ceee67ea6f3c3c8ff520bf SHA1 f4b448b47d592c1552d8076b6bd873491bf66b0c SHA256 f42cbe643d664796cf3cf280f3e96fcfbe051f60a4f2d8428684efa539bd8d04 -MD5 b2799931c0a89612080d99a061f372a9 vienna-rna-1.6.ebuild 1580 -RMD160 42e85e92352a27c412ceee67ea6f3c3c8ff520bf vienna-rna-1.6.ebuild 1580 -SHA256 f42cbe643d664796cf3cf280f3e96fcfbe051f60a4f2d8428684efa539bd8d04 vienna-rna-1.6.ebuild 1580 -MISC ChangeLog 1822 RMD160 a1e112b24ef495fb1bc1346ecba895f840e27e2b SHA1 58692669982be7a90c608955ab5231c3e88e0a00 SHA256 76120e798495f8cf112f4369f503522ec8b9ef4b0c81db779ac92780615089cb -MD5 fbe63701174fb306b6faf79b827a8284 ChangeLog 1822 -RMD160 a1e112b24ef495fb1bc1346ecba895f840e27e2b ChangeLog 1822 -SHA256 76120e798495f8cf112f4369f503522ec8b9ef4b0c81db779ac92780615089cb ChangeLog 1822 +MISC ChangeLog 1922 RMD160 306a62785e0a9ecb36208433df40a4a46067ba7f SHA1 a9b5628c69cefc1dacadd239fce6b6a53606f6e5 SHA256 4106ad2b2663d6721b387b1e6535215cb8026d69c1ce710b522b9ac22584a40f +MD5 eb96eb2e54fbf7302f1ec72bae15f9fb ChangeLog 1922 +RMD160 306a62785e0a9ecb36208433df40a4a46067ba7f ChangeLog 1922 +SHA256 4106ad2b2663d6721b387b1e6535215cb8026d69c1ce710b522b9ac22584a40f ChangeLog 1922 MISC metadata.xml 1228 RMD160 8db8df2ec48d6a7e8dd4c592f7f4a9c7f8810cf9 SHA1 e46645ad44f1236a471a0ba79e08e4f6fe752dcb SHA256 7c558ba2568a5ec64654465c4c45784a32c4dccd6adf33518cf1f3daca2acd16 MD5 3f7b19f43a1d86838c7947446337f2a8 metadata.xml 1228 RMD160 8db8df2ec48d6a7e8dd4c592f7f4a9c7f8810cf9 metadata.xml 1228 @@ -24,9 +19,6 @@ SHA256 7c558ba2568a5ec64654465c4c45784a32c4dccd6adf33518cf1f3daca2acd16 metadata MD5 f1a1d167e6d5e17687cee4ffb95c6044 files/digest-vienna-rna-1.4 65 RMD160 dc33135ac5f3b27e7534b2ef38704c7429f31285 files/digest-vienna-rna-1.4 65 SHA256 852d5aff2e9c90eaf97e1a98a678db51f39ba619d4f6aa58ac693baeb00b8bce files/digest-vienna-rna-1.4 65 -MD5 6f5659558516fa70fdc62ca69172db47 files/digest-vienna-rna-1.6 66 -RMD160 11c90b143b6a4df0486cfb5e5d1f0ab9a8dfae96 files/digest-vienna-rna-1.6 66 -SHA256 4ebed7406ba90d2d2f8600750f5a13f8df3497c285f17e87e3206b0545db4909 files/digest-vienna-rna-1.6 66 MD5 eb193013e189f83146d7327383271be0 files/digest-vienna-rna-1.6.1 250 RMD160 caf402e2c2f9d9cbf9182f4c79195bef66f39f53 files/digest-vienna-rna-1.6.1 250 SHA256 cfbe4a4bc1a18ddbd121ff08e6b67fcaf93a7ca8e28068f4f837a8b53fc3adf0 files/digest-vienna-rna-1.6.1 250 diff --git a/sci-biology/vienna-rna/files/digest-vienna-rna-1.6 b/sci-biology/vienna-rna/files/digest-vienna-rna-1.6 deleted file mode 100644 index 5057a248d697..000000000000 --- a/sci-biology/vienna-rna/files/digest-vienna-rna-1.6 +++ /dev/null @@ -1 +0,0 @@ -MD5 d80af9db77fc68375980bea39158b32c ViennaRNA-1.6.tar.gz 1159849 diff --git a/sci-biology/vienna-rna/vienna-rna-1.6.ebuild b/sci-biology/vienna-rna/vienna-rna-1.6.ebuild deleted file mode 100644 index c0fda506595a..000000000000 --- a/sci-biology/vienna-rna/vienna-rna-1.6.ebuild +++ /dev/null @@ -1,46 +0,0 @@ -# Copyright 1999-2006 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.6.ebuild,v 1.1 2006/02/03 04:50:55 ribosome Exp $ - -inherit toolchain-funcs - -DESCRIPTION="The Vienna RNA Package - RNA secondary structure prediction and comparison" -LICENSE="vienna-rna" -HOMEPAGE="http://www.tbi.univie.ac.at/~ivo/RNA" -SRC_URI="http://www.tbi.univie.ac.at/~ivo/RNA/ViennaRNA-${PV}.tar.gz" - -SLOT="0" -IUSE="" -KEYWORDS="~x86 ~ppc" - -DEPEND="dev-lang/perl - media-libs/gd" - -S="${WORKDIR}/ViennaRNA-${PV}" - -src_compile() { - econf --with-cluster || die "Configuration failed." - cd "${S}"/RNAforester/g2-0.70 - sed -e "s:LIBDIR = /usr/lib:LIBDIR = ${D}/usr/lib:" \ - -e "s:INCDIR = /usr/include:INCDIR = ${D}/usr/include:" \ - -i Makefile || die "Failed patching RNAForester build system." - cd "${S}" - emake || die "Compilation failed." - cd "${S}"/Readseq - sed -e "s:CC=cc:CC=$(tc-getCC):" -e "s:CFLAGS=:CFLAGS=${CFLAGS}:" \ - -i Makefile || die "Failed patching readseq Makefile." - make || die "Failed to compile readseq." - # TODO: Add (optional?) support for the NCBI toolkit. -} - -src_install() { - make install DESTDIR="${D}" || die "Installation failed." - dodoc AUTHORS ChangeLog NEWS README THANKS || \ - die "Failed to install documentation." - newbin Readseq/readseq readseq-vienna || die \ - "Installing readseq failed." - dodoc Readseq/Readseq.help || die \ - "Readseq Documentation installation failed." - newdoc Readseq/Readme README.readseq || die \ - "Installing readseq Readme failed." -} |