Removed old

(Portage version: 2.2.0_alpha15/cvs/Linux x86_64)

3 files changed, 5 insertions, 383 deletions

diff --git a/sci-libs/cctbx/ChangeLog b/sci-libs/cctbx/ChangeLog
index d02f78bba108..37d74cd49f71 100644
--- a/sci-libs/cctbx/ChangeLog
+++ b/sci-libs/cctbx/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-libs/cctbx
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/cctbx/ChangeLog,v 1.11 2011/01/15 14:44:16 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/cctbx/ChangeLog,v 1.12 2011/01/15 15:17:28 jlec Exp $
+
+  15 Jan 2011; Justin Lecher <jlec@gentoo.org>
+  -cctbx-2009.11.01.0123-r1.ebuild, -cctbx-2010.03.29.2334-r2.ebuild:
+  Removed old
 
   15 Jan 2011; Justin Lecher <jlec@gentoo.org>
   files/2010.03.29.2334-boost.patch, cctbx-2010.03.29.2334-r2.ebuild,
diff --git a/sci-libs/cctbx/cctbx-2009.11.01.0123-r1.ebuild b/sci-libs/cctbx/cctbx-2009.11.01.0123-r1.ebuild
deleted file mode 100644
index 059be0cb80e6..000000000000
--- a/sci-libs/cctbx/cctbx-2009.11.01.0123-r1.ebuild
+++ /dev/null
@@ -1,197 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/cctbx/cctbx-2009.11.01.0123-r1.ebuild,v 1.6 2010/12/29 15:16:29 jlec Exp $
-
-EAPI="3"
-PYTHON_DEPEND="2"
-
-inherit eutils python toolchain-funcs
-
-MY_PV="${PV//./_}"
-
-DESCRIPTION="Computational Crystallography Toolbox"
-HOMEPAGE="http://cctbx.sourceforge.net/"
-SRC_URI="http://cci.lbl.gov/cctbx_build/results/${MY_PV}/${PN}_bundle.tar.gz -> ${P}.tar.gz"
-
-LICENSE="cctbx-2.0"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+minimal openmp threads"
-
-RDEPEND="
-	>dev-libs/boost-1.39
-	sci-libs/clipper
-	sci-libs/fftw
-	!minimal? (
-		sci-chemistry/cns
-		sci-chemistry/shelx )"
-DEPEND="${RDEPEND}
-	>=dev-util/scons-1.2"
-
-S="${WORKDIR}"
-MY_S="${WORKDIR}"/cctbx_sources
-MY_B="${WORKDIR}"/cctbx_build
-
-pkg_setup() {
-	if use openmp && ! tc-has-openmp; then
-		ewarn "You are using gcc and OpenMP is only available with gcc >= 4.2 and icc"
-		ewarn "If you want to build ${PN} with OpenMP, abort now,"
-		ewarn "and switch CC to an OpenMP capable compiler"
-	fi
-	python_set_active_version 2
-}
-
-src_prepare() {
-	local opts
-	local optsld
-
-	rm -rf "${MY_S}/scons"
-
-	mkdir -p "${MY_S}"/scons/src/ "${MY_S}/boost"
-
-	ln -sf "${EPREFIX}"/usr/$(get_libdir)/scons-* "${MY_S}"/scons/src/engine || die
-
-	# Get CXXFLAGS in format suitable for substitition into SConscript
-	for i in ${CXXFLAGS}; do
-		opts="${opts} \"${i}\","
-	done
-
-	# Strip off the last comma
-	opts=${opts%,}
-
-	# Fix CXXFLAGS
-	sed -i \
-		-e "s:\"-O3\", \"-ffast-math\":${opts}:g" \
-		${MY_S}/libtbx/SConscript
-
-	# Get LDFLAGS in format suitable for substitition into SConscript
-	for i in ${LDFLAGS}; do
-		optsld="${optsld} \"${i}\","
-	done
-
-	optsld=${optsld%,}
-
-	# Fix LDFLAGS which should be as-needed ready
-	sed -i \
-		-e "s:\"-shared\":\"-shared\", ${optsld}:g" \
-		${MY_S}/libtbx/SConscript
-}
-
-src_configure() {
-	local compiler
-	local myconf
-
-	myconf="${MY_S}/libtbx/configure.py"
-
-	# Get compiler in the right way
-	compiler=$(expr match "$(tc-getCC)" '.*\([a-z]cc\)')
-	myconf="${myconf} --compiler=${compiler}"
-
-	# Precompiling python scripts. It is done in upstreams install script.
-	# Perhaps use python_mod_optimize, but as this script works we should stick to it.
-	$(PYTHON -a) "${MY_S}/libtbx/command_line/py_compile_all.py"
-
-	# Additional USE flag usage
-	check_use openmp
-	myconf="${myconf} --enable-openmp-if-possible=${USE_openmp}"
-
-	use threads && USEthreads="--enable-boost-threads" && \
-		ewarn "If using boost threads openmp support is disabled"
-
-	myconf="${myconf} ${USE_threads} --scan-boost"
-
-	mkdir "${MY_B}" && myconf="${myconf} --current_working_directory=${MY_B}"
-	cd "${MY_B}"
-
-	myconf="${myconf} --build=release fftw3tbx rstbx smtbx mmtbx clipper"
-	einfo "configuring with ${python} ${myconf}"
-
-	$(PYTHON -a) ${myconf} \
-		|| die "configure failed"
-}
-
-src_compile() {
-	local makeopts_exp
-
-	cd "${MY_B}"
-
-	makeopts_exp=${MAKEOPTS/j/j }
-	makeopts_exp=${makeopts_exp%-l[0-9]*}
-
-	source setpaths_all.sh
-
-	einfo "compiling with libtbx.scons ${makeopts_exp}"
-	libtbx.scons ${makeopts_exp} .|| die "make failed"
-}
-
-src_test(){
-	source "${MY_B}"/setpaths_all.sh
-	libtbx.python $(libtbx.show_dist_paths boost_adaptbx)/tests/tst_rational.py && \
-	libtbx.python ${SCITBX_DIST}/run_tests.py ${MAKEOPTS_EXP} && \
-	libtbx.python ${CCTBX_DIST}/run_tests.py  ${MAKEOPTS_EXP} \
-	|| die "test failed"
-}
-
-src_install(){
-	# This is what Bill Scott does in the fink package. Do we need this as well?
-#	-e "s:prepend:append:g" \
-
-	find cctbx_build/ -type f \( -name "*.py" -o -name "*sh" \) -exec \
-	sed -e "s:${MY_S}:${EPREFIX}/usr/$(get_libdir)/cctbx/cctbx_sources:g" \
-	    -e "s:${MY_B}:${EPREFIX}/usr/$(get_libdir)/cctbx/cctbx_build:g"  \
-	    -i '{}' \; || die "Fail to correct path"
-
-	ebegin "removing unnessary files"
-		rm -r "${S}"/cctbx_sources/scons || die "failed to remove uneeded scons"
-		find "${S}" -type f -name "*conftest*" -exec rm -f '{}' \; || die "failed to remove uneeded *.o"
-		find "${S}" -type f -name "*.o" -exec rm -f '{}' \; || die "failed to remove uneeded *.o"
-		find "${S}" -type f -name "*.c" -exec rm -f '{}' \; || die "failed to remove uneeded *.c"
-		find "${S}" -type f -name "*.cpp" -exec rm -f '{}' \; || die "failed to remove uneeded *.cpp"
-		find "${S}" -type f -name "*.pyc" -exec rm -f '{}' \; || die "failed to remove uneeded *.pyc"
-	eend
-
-	insinto /usr/$(get_libdir)/${PN}
-	doins -r cctbx_sources cctbx_build || die
-
-# fperms cannot handle wildcards
-	chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/*sh && \
-	chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/lib/* && \
-	chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/scitbx/array_family/* && \
-	chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/scitbx/serialization/* && \
-	chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/scitbx/error/* && \
-	chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/scitbx/fftpack/timing/* && \
-	chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/scitbx/lbfgs/* && \
-	chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/chiltbx/handle_test && \
-	chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/bin/* || \
-	die
-
-	insinto /etc/profile.d/
-	newins "${MY_B}"/setpaths.sh 30cctbx.sh || die
-	newins "${MY_B}"/setpaths.csh 30cctbx.csh || die
-
-	cat >> "${T}"/30cctbx <<- EOF
-	LDPATH="${EPREFIX}/usr/$(get_libdir)/${PN}/cctbx_build/lib"
-	EOF
-
-	doenvd "${T}"/30cctbx || die
-}
-
-pkg_postinst () {
-	python_need_rebuild
-	python_mod_optimize /usr/$(get_libdir)/${PN}/cctbx_sources
-}
-
-pkg_postrm () {
-	python_mod_cleanup /usr/$(get_libdir)/${PN}/cctbx_sources
-}
-
-check_use() {
-	for var in $@; do
-		if use ${var}; then
-			printf -v "USE_$var" True
-		else
-			printf -v "USE_$var" False
-		fi
-	shift
-	done
-}
diff --git a/sci-libs/cctbx/cctbx-2010.03.29.2334-r2.ebuild b/sci-libs/cctbx/cctbx-2010.03.29.2334-r2.ebuild
deleted file mode 100644
index 5dbdc622d98d..000000000000
--- a/sci-libs/cctbx/cctbx-2010.03.29.2334-r2.ebuild
+++ /dev/null
@@ -1,185 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/cctbx/cctbx-2010.03.29.2334-r2.ebuild,v 1.4 2011/01/15 14:44:16 jlec Exp $
-
-EAPI="3"
-
-PYTHON_DEPEND="2"
-
-inherit eutils prefix python toolchain-funcs
-
-MY_PV="${PV//./_}"
-
-DESCRIPTION="Computational Crystallography Toolbox"
-HOMEPAGE="http://cctbx.sourceforge.net/"
-SRC_URI="http://cci.lbl.gov/cctbx_build/results/${MY_PV}/${PN}_bundle.tar.gz -> ${P}.tar.gz"
-
-LICENSE="cctbx-2.0"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+minimal openmp threads"
-
-RDEPEND="
-	>dev-libs/boost-1.39
-	sci-libs/clipper
-	sci-libs/fftw
-	!minimal? (
-		sci-chemistry/cns
-		sci-chemistry/shelx )"
-DEPEND="${RDEPEND}
-	>=dev-util/scons-1.2"
-
-S="${WORKDIR}"
-MY_S="${WORKDIR}"/cctbx_sources
-MY_B="${WORKDIR}"/cctbx_build
-
-pkg_setup() {
-	if use openmp && ! tc-has-openmp; then
-		ewarn "You are using gcc and OpenMP is only available with gcc >= 4.2 and icc"
-		ewarn "If you want to build ${PN} with OpenMP, abort now,"
-		ewarn "and switch CC to an OpenMP capable compiler"
-	fi
-	python_set_active_version 2
-}
-
-src_prepare() {
-	local opts
-	local optsld
-
-	epatch \
-		"${FILESDIR}"/${PV}-tst_server.py.patch \
-		"${FILESDIR}"/${PV}-boost.patch \
-		"${FILESDIR}"/${PV}-clipper.patch \
-		"${FILESDIR}"/${PV}-flags.patch \
-		"${FILESDIR}"/${PV}-soname.patch
-
-	eprefixify "${MY_S}"/scitbx/libtbx_refresh.py
-
-	rm -rf "${MY_S}/scons" "${MY_S}/boost" "${MY_S}/PyCifRW"
-	find "${MY_S}/clipper" -name "*.h" -delete
-
-	echo "import os, sys; os.execvp('scons', sys.argv)" > "${MY_S}"/libtbx/command_line/scons.py
-}
-
-src_configure() {
-	local compiler
-	local myconf
-
-	myconf="${MY_S}/libtbx/configure.py"
-
-	compiler=$(expr match "$(tc-getCC)" '.*\([a-z]cc\)')
-	myconf="${myconf} --compiler=${compiler}"
-
-	# Additional USE flag usage
-	check_use openmp
-	myconf="${myconf} --enable-openmp-if-possible=${USE_openmp}"
-
-	use threads && USEthreads="--enable-boost-threads" && \
-		ewarn "If using boost threads openmp support is disabled"
-
-	myconf="${myconf} ${USE_threads} --scan-boost --use_environment_flags"
-
-	mkdir "${MY_B}" && myconf="${myconf} --current_working_directory=${MY_B}"
-	cd "${MY_B}"
-
-	myconf="${myconf} --build=release fftw3tbx rstbx smtbx mmtbx clipper_adaptbx fable"
-	einfo "configuring with ${python} ${myconf}"
-
-	$(PYTHON) ${myconf} || die "configure failed"
-}
-
-src_compile() {
-	local makeopts_exp
-
-	cd "${MY_B}"
-
-	makeopts_exp=${MAKEOPTS/j/j }
-	makeopts_exp=${makeopts_exp%-l[0-9]*}
-
-	source setpaths_all.sh
-
-	einfo "compiling with libtbx.scons ${makeopts_exp}"
-	libtbx.scons ${makeopts_exp} .|| die "make failed"
-}
-
-src_test(){
-	source "${MY_B}"/setpaths_all.sh
-	libtbx.python $(libtbx.show_dist_paths boost_adaptbx)/tests/tst_rational.py && \
-	libtbx.python ${SCITBX_DIST}/run_tests.py ${MAKEOPTS_EXP} && \
-	libtbx.python ${CCTBX_DIST}/run_tests.py  ${MAKEOPTS_EXP} \
-	|| die "test failed"
-}
-
-src_install(){
-#	find cctbx_build/ -type f \( -name "*.py" -o -name "*sh" \) -exec \
-#	sed -e "s:${MY_S}:${EPREFIX}/usr/$(get_libdir)/cctbx/cctbx_sources:g" \
-#	    -e "s:${MY_B}:${EPREFIX}/usr/$(get_libdir)/cctbx/cctbx_build:g"  \
-#	    -i '{}' \; || die "Fail to correct path"
-
-	ebegin "removing unnessary files"
-		rm -r "${S}"/cctbx_sources/{clipper,ccp4io,ucs-fonts,TAG} || die "failed to remove uneeded scons"
-		find "${S}" -type f -name "*conftest*" -delete || die "failed to remove uneeded *.o"
-		find "${S}" -type f -name "*.o" -delete || die "failed to remove uneeded *.o"
-		find "${S}" -type f -name "*.c" -delete || die "failed to remove uneeded *.c"
-		find "${S}" -type f -name "*.f" -delete || die "failed to remove uneeded *.c"
-		find "${S}" -type f -name "*.cpp" -delete || die "failed to remove uneeded *.cpp"
-		find "${S}" -type f -name "*.pyc" -delete || die "failed to remove uneeded *.pyc"
-		find "${S}" -type f -name "SCons*" -delete || die "failed to remove uneeded *.pyc"
-		find "${S}" -type f -name "Makefile" -delete || die "failed to remove uneeded *.pyc"
-		find "${S}" -type f -name "config.log" -delete || die "failed to remove uneeded *.pyc"
-		find "${S}" -type d -empty -delete || die
-		find ${MY_B} -maxdepth 1 -type f
-		find ${MY_B} -maxdepth 1 -type f -delete
-	eend
-
-	dobin ${MY_B}/bin/* || die
-	rm -rf ${MY_B}/bin
-	dolib.so ${MY_B}/lib/lib* || die
-	rm -f ${MY_B}/lib/lib*
-
-	insinto /usr/include
-	doins -r ${MY_B}/include/* || die
-	rm -rf ${MY_B}/include
-
-	insinto /usr/libexec/${PN}
-	doins -r ${MY_B}/* || die
-	find "${ED}"/usr/libexec/${PN} -type f -exec chmod 755 '{}' \;
-
-	cd ${MY_S}
-	insinto $(python_get_sitedir)
-	doins -r * || die
-	exeinto $(python_get_sitedir)
-	doexe ${MY_B}/lib/* || die
-	rm -rvf ${MY_B}/lib
-
-	sed \
-		-e "/PYTHONPATH/s:${MY_S}:$(python_get_sitedir):g" \
-		-e "/PYTHONPATH/s:${MY_B}:$(python_get_sitedir):g" \
-		-e "/LD_LIBRARY_PATH/s:${MY_B}/lib:${EPREFIX}/usr/$(get_libdir):g" \
-		-e "/PATH/s:${MY_B}/bin:${EPREFIX}/usr/bin:g" \
-		-e "/PATH/s:${MY_B}/exe:${EPREFIX}/usr/bin:g" \
-		-e "/exec/s:${MY_S}:$(python_get_sitedir):g" \
-		-e "/LIBTBX_BUILD/s:${MY_B}:/usr:g" \
-		-i "${ED}"/usr/bin/* || die
-
-}
-
-pkg_postinst () {
-	python_need_rebuild
-	python_mod_optimize boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx chiltbx clipper_adaptbx crys3d fable fftw3tbx gltbx iotbx libtbx mmtbx omptbx rstbx scitbx smtbx spotfinder tntbx
-}
-
-pkg_postrm () {
-	python_mod_cleanup boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx chiltbx clipper_adaptbx crys3d fable fftw3tbx gltbx iotbx libtbx mmtbx omptbx rstbx scitbx smtbx spotfinder tntbx
-}
-
-check_use() {
-	for var in $@; do
-		if use ${var}; then
-			printf -v "USE_$var" True
-		else
-			printf -v "USE_$var" False
-		fi
-	shift
-	done
-}