diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2012-09-30 17:17:21 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2012-09-30 17:17:21 +0000 |
| commit | 5fc10c2c3ee32b85def311482f5534a88bf7c7c3 (patch) | |
| tree | 4630362f1dbf2c366c69177ad837592ab69fb177 /sci-biology | |
| parent | Drop ia64 keywords (diff) | |
| download | gentoo-2-5fc10c2c3ee32b85def311482f5534a88bf7c7c3.tar.gz gentoo-2-5fc10c2c3ee32b85def311482f5534a88bf7c7c3.tar.bz2 gentoo-2-5fc10c2c3ee32b85def311482f5534a88bf7c7c3.zip | |
Version bump, remove old, add git dep
(Portage version: 2.2.0_alpha134/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/gatk/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/gatk/gatk-1.5.ebuild | 44 | ||||
| -rw-r--r-- | sci-biology/gatk/gatk-1.6.ebuild (renamed from sci-biology/gatk/gatk-1.4.ebuild) | 5 |
3 files changed, 10 insertions, 47 deletions
diff --git a/sci-biology/gatk/ChangeLog b/sci-biology/gatk/ChangeLog index 29ce6b1a7b58..771019451c2c 100644 --- a/sci-biology/gatk/ChangeLog +++ b/sci-biology/gatk/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/gatk # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/ChangeLog,v 1.4 2012/04/07 23:32:18 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/ChangeLog,v 1.5 2012/09/30 17:17:21 weaver Exp $ + +*gatk-1.6 (30 Sep 2012) + + 30 Sep 2012; Andrey Kislyuk <weaver@gentoo.org> -gatk-1.4.ebuild, + -gatk-1.5.ebuild, +gatk-1.6.ebuild: + Version bump, remove old, add git dep *gatk-1.5 (07 Apr 2012) diff --git a/sci-biology/gatk/gatk-1.5.ebuild b/sci-biology/gatk/gatk-1.5.ebuild deleted file mode 100644 index e1ee4da5d921..000000000000 --- a/sci-biology/gatk/gatk-1.5.ebuild +++ /dev/null @@ -1,44 +0,0 @@ -# Copyright 1999-2012 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/gatk-1.5.ebuild,v 1.1 2012/04/07 23:32:18 weaver Exp $ - -EAPI=4 - -MY_HASH=c981d24 - -EGIT_REPO_URI="https://github.com/broadgsa/gatk.git" - -EANT_BUILD_TARGET="dist" -EANT_NEEDS_TOOLS="true" -JAVA_ANT_REWRITE_CLASSPATH="true" - -#inherit java-pkg-2 java-ant-2 git -inherit java-pkg-2 java-ant-2 - -DESCRIPTION="The Genome Analysis Toolkit" -HOMEPAGE="http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit" -SRC_URI="https://github.com/broadgsa/gatk/tarball/${PV} -> ${P}.tar.gz" - -LICENSE="as-is" -SLOT="0" -IUSE="" -KEYWORDS="~amd64" - -COMMON_DEPS="" -DEPEND=">=virtual/jdk-1.6 - ${COMMON_DEPS}" -RDEPEND=">=virtual/jre-1.6 - ${COMMON_DEPS}" - -S="${WORKDIR}/broadgsa-gatk-${MY_HASH}" - -src_prepare() { - sed -i '/property name="ivy.home"/ s|${user.home}|'${WORKDIR}'|' build.xml || die - java-pkg-2_src_prepare -} - -src_install() { - java-pkg_dojar dist/*.jar - java-pkg_dolauncher GenomeAnalysisTK --jar GenomeAnalysisTK.jar - java-pkg_dolauncher AnalyzeCovariates --jar AnalyzeCovariates.jar -} diff --git a/sci-biology/gatk/gatk-1.4.ebuild b/sci-biology/gatk/gatk-1.6.ebuild index 1599395c237a..3c5c9f20952c 100644 --- a/sci-biology/gatk/gatk-1.4.ebuild +++ b/sci-biology/gatk/gatk-1.6.ebuild @@ -1,10 +1,10 @@ # Copyright 1999-2012 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/gatk-1.4.ebuild,v 1.1 2012/01/29 22:10:21 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/gatk-1.6.ebuild,v 1.1 2012/09/30 17:17:21 weaver Exp $ EAPI=4 -MY_HASH=8439a51 +MY_HASH=93333f0 EGIT_REPO_URI="https://github.com/broadgsa/gatk.git" @@ -26,6 +26,7 @@ KEYWORDS="~amd64" COMMON_DEPS="" DEPEND=">=virtual/jdk-1.6 + dev-vcs/git ${COMMON_DEPS}" RDEPEND=">=virtual/jre-1.6 ${COMMON_DEPS}" |