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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2010-01-21 18:25:31 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2010-01-21 18:25:31 +0000 |
| commit | 5b1c6660837f7f9e2817eae3818160e219fa4226 (patch) | |
| tree | de9c60ddaf6a65a1553594363a21ff6a697d4921 /sci-biology | |
| parent | Add myself to maintainers. (diff) | |
| download | gentoo-2-5b1c6660837f7f9e2817eae3818160e219fa4226.tar.gz gentoo-2-5b1c6660837f7f9e2817eae3818160e219fa4226.tar.bz2 gentoo-2-5b1c6660837f7f9e2817eae3818160e219fa4226.zip | |
New package, ebuild written by me
(Portage version: 2.2_rc30/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/bfast/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/bfast/bfast-0.6.2a.ebuild | 39 | ||||
| -rw-r--r-- | sci-biology/bfast/metadata.xml | 9 |
3 files changed, 58 insertions, 0 deletions
diff --git a/sci-biology/bfast/ChangeLog b/sci-biology/bfast/ChangeLog new file mode 100644 index 000000000000..6633e6a83d5e --- /dev/null +++ b/sci-biology/bfast/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/bfast +# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/ChangeLog,v 1.1 2010/01/21 18:25:31 weaver Exp $ + +*bfast-0.6.2a (21 Jan 2010) + + 21 Jan 2010; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml, + +bfast-0.6.2a.ebuild: + New package, ebuild written by me + diff --git a/sci-biology/bfast/bfast-0.6.2a.ebuild b/sci-biology/bfast/bfast-0.6.2a.ebuild new file mode 100644 index 000000000000..61b317c3442c --- /dev/null +++ b/sci-biology/bfast/bfast-0.6.2a.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/bfast-0.6.2a.ebuild,v 1.1 2010/01/21 18:25:31 weaver Exp $ + +EAPI="2" + +inherit autotools + +DESCRIPTION="Blat-like Fast Accurate Search Tool" +HOMEPAGE="http://genome.ucla.edu/bfast" +SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="" +RDEPEND="dev-perl/XML-Simple" + +src_prepare() { + sed -i -e 's/-m64//' \ + -e 's/CFLAGS="${default_CFLAGS} ${extended_CFLAGS}"/CFLAGS="${CFLAGS} ${default_CFLAGS} ${extended_CFLAGS}"/' \ + configure.ac || die + eautoreconf +} + +src_install() { + einstall || die + dodoc AUTHORS NEWS README +} + +src_test() { + # not sure why this is necessary + sed -i 's|test.definitions.sh|./test.definitions.sh|' tests/*.sh + # problems with checksum matching - also not sure why + sed -i '/test.diff.sh/ d' tests/Makefile + emake check || die +} diff --git a/sci-biology/bfast/metadata.xml b/sci-biology/bfast/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/bfast/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> |