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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-07-25 21:41:49 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-07-25 21:41:49 +0000 |
| commit | 2fe0bbe5f94c5826721df9c2103bd442e81c9e25 (patch) | |
| tree | 8611163e0f7636bdfd3023b651a8ed13a09e2ec5 /sci-biology | |
| parent | Fix compilation with gcc-4.4. Patch by Victor Ostorga <vostorga AT gentoo DO... (diff) | |
| download | gentoo-2-2fe0bbe5f94c5826721df9c2103bd442e81c9e25.tar.gz gentoo-2-2fe0bbe5f94c5826721df9c2103bd442e81c9e25.tar.bz2 gentoo-2-2fe0bbe5f94c5826721df9c2103bd442e81c9e25.zip | |
Import from Science overlay
(Portage version: 2.2_rc30/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/pilercr/ChangeLog | 11 | ||||
| -rw-r--r-- | sci-biology/pilercr/files/pilercr-1.0-gcc43.patch | 33 | ||||
| -rw-r--r-- | sci-biology/pilercr/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/pilercr/pilercr-1.0.ebuild | 34 |
4 files changed, 87 insertions, 0 deletions
diff --git a/sci-biology/pilercr/ChangeLog b/sci-biology/pilercr/ChangeLog new file mode 100644 index 000000000000..762520722d77 --- /dev/null +++ b/sci-biology/pilercr/ChangeLog @@ -0,0 +1,11 @@ +# ChangeLog for sci-biology/piler-cr +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/pilercr/ChangeLog,v 1.1 2009/07/25 21:41:49 weaver Exp $ + + 25 Jul 2009; Andrey Kislyuk <weaver@gentoo.org> + +files/pilercr-1.0-gcc43.patch, +metadata.xml: + Import from Science overlay + + 18 Feb 2009; weaver <weaver@gentoo.org> ChangeLog: + New package sci-biology/pilercr, ebuild written by me + diff --git a/sci-biology/pilercr/files/pilercr-1.0-gcc43.patch b/sci-biology/pilercr/files/pilercr-1.0-gcc43.patch new file mode 100644 index 000000000000..7b49df872e27 --- /dev/null +++ b/sci-biology/pilercr/files/pilercr-1.0-gcc43.patch @@ -0,0 +1,33 @@ +diff -dur work/multaln.h work-orig/multaln.h +--- work/multaln.h 2007-04-17 19:02:18.000000000 +0000 ++++ work-orig/multaln.h 2009-02-18 21:25:26.166333299 +0000 +@@ -6,6 +6,7 @@ + #define _CRT_SECURE_NO_DEPRECATE 1
+ #endif
+
++#include <cstring>
+ #include <vector>
+ #include <limits.h>
+ #include <ctype.h>
+diff -dur work/seqvect.h work-orig/seqvect.h +--- work/seqvect.h 2006-04-06 23:36:18.000000000 +0000 ++++ work-orig/seqvect.h 2009-02-18 21:25:26.171090246 +0000 +@@ -1,6 +1,7 @@ + #ifndef SeqVect_h
+ #define SeqVect_h
+
++#include <stdio.h>
+ #include <vector>
+ #include "seq.h"
+
+diff -dur work/tree.h work-orig/tree.h +--- work/tree.h 2006-04-05 23:52:42.000000000 +0000 ++++ work-orig/tree.h 2009-02-18 21:25:26.171090246 +0000 +@@ -1,6 +1,7 @@ + #ifndef tree_h
+ #define tree_h
+
++#include <stdlib.h>
+ #include <limits.h>
+
+ class Clust;
diff --git a/sci-biology/pilercr/metadata.xml b/sci-biology/pilercr/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/pilercr/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> diff --git a/sci-biology/pilercr/pilercr-1.0.ebuild b/sci-biology/pilercr/pilercr-1.0.ebuild new file mode 100644 index 000000000000..043b9400cb6c --- /dev/null +++ b/sci-biology/pilercr/pilercr-1.0.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/pilercr/pilercr-1.0.ebuild,v 1.1 2009/07/25 21:41:49 weaver Exp $ + +EAPI="2" + +inherit eutils toolchain-funcs + +DESCRIPTION="Analysis of repetitive DNA found in genome sequences" +HOMEPAGE="http://www.drive5.com/pilercr/" +#SRC_URI="http://www.drive5.com/pilercr/pilercr.tar.gz" +SRC_URI="mirror://gentoo/${P}.tar.gz" + +LICENSE="public-domain" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="" +RDEPEND="" + +S="${WORKDIR}" + +src_prepare() { + epatch "${FILESDIR}"/${P}-gcc43.patch || die +} + +src_compile() { + emake GPP="$(tc-getCXX)" CFLAGS="${CXXFLAGS}" || die +} + +src_install() { + dobin pilercr || die +} |