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authorJustin Lecher <jlec@gentoo.org>2013-02-28 15:09:15 +0000
committerJustin Lecher <jlec@gentoo.org>2013-02-28 15:09:15 +0000
commit225e042b7c1cb07a9dbafcff874140ca36870537 (patch)
treedc9c80b6f8aa717f05c9b9c9e2959bbbf925ca2c /sci-biology/ncbi-tools++
parentTurn bufferevents off by default: https://trac.torproject.org/projects/tor/ti... (diff)
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sci-biology/ncbi-tools++: Drop old
(Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
Diffstat (limited to 'sci-biology/ncbi-tools++')
-rw-r--r--sci-biology/ncbi-tools++/ChangeLog8
-rw-r--r--sci-biology/ncbi-tools++/metadata.xml10
-rw-r--r--sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15-r1.ebuild76
3 files changed, 11 insertions, 83 deletions
diff --git a/sci-biology/ncbi-tools++/ChangeLog b/sci-biology/ncbi-tools++/ChangeLog
index 99b5d325ec06..6e53f3da9d62 100644
--- a/sci-biology/ncbi-tools++/ChangeLog
+++ b/sci-biology/ncbi-tools++/ChangeLog
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/ncbi-tools++
-# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v 1.26 2012/11/05 11:22:49 jlec Exp $
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v 1.27 2013/02/28 15:09:15 jlec Exp $
+
+ 28 Feb 2013; Justin Lecher <jlec@gentoo.org>
+ -ncbi-tools++-2010.06.15-r1.ebuild, metadata.xml:
+ Drop old
05 Nov 2012; Justin Lecher <jlec@gentoo.org>
ncbi-tools++-0.2010.06.15-r1.ebuild:
diff --git a/sci-biology/ncbi-tools++/metadata.xml b/sci-biology/ncbi-tools++/metadata.xml
index 3302123e5718..fc7c76942a10 100644
--- a/sci-biology/ncbi-tools++/metadata.xml
+++ b/sci-biology/ncbi-tools++/metadata.xml
@@ -1,9 +1,9 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <maintainer>
- <email>weaver@gentoo.org</email>
- <name>Andrey Kislyuk</name>
- </maintainer>
- <herd>sci-biology</herd>
+ <maintainer>
+ <email>weaver@gentoo.org</email>
+ <name>Andrey Kislyuk</name>
+ </maintainer>
+ <herd>sci-biology</herd>
</pkgmetadata>
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15-r1.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15-r1.ebuild
deleted file mode 100644
index 92a083e4dd8b..000000000000
--- a/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15-r1.ebuild
+++ /dev/null
@@ -1,76 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15-r1.ebuild,v 1.5 2012/06/03 12:53:18 jlec Exp $
-
-EAPI="3"
-
-inherit eutils flag-o-matic multilib toolchain-funcs
-
-MY_TAG="Jun_15_2010"
-MY_Y="${MY_TAG/*_/}"
-MY_P="ncbi_cxx--${MY_TAG}"
-
-DESCRIPTION="NCBI C++ Toolkit, including NCBI BLAST+"
-HOMEPAGE="http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit"
-SRC_URI="
- ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/${MY_Y}/${MY_TAG}/${MY_P}.tar.gz
- http://dev.gentoo.org/~jlec/distfiles/${P}-asneeded.patch.xz"
-
-LICENSE="public-domain"
-SLOT="0"
-IUSE="sqlite mysql"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-
-DEPEND="
- sqlite? ( dev-db/sqlite:3 )
- mysql? ( virtual/mysql )"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
-# filter-ldflags -Wl,--as-needed
-# append-ldflags -Wl,--no-undefined
- sed -i -e 's/-print-file-name=libstdc++.a//' \
- -e '/sed/ s/\([gO]\[0-9\]\)\*/\1\\+/' \
- src/build-system/configure || die
- epatch \
- "${FILESDIR}"/${P}-gcc46.patch \
- "${FILESDIR}"/${P}-gcc47.patch \
- "${WORKDIR}"/${P}-asneeded.patch \
- "${FILESDIR}"/${P}-libpng15.patch \
- "${FILESDIR}"/${P}-glibc-214.patch
-
- use prefix && append-ldflags -Wl,-rpath,"${EPREFIX}/usr/$(get_libdir)/${PN}"
-}
-
-src_configure() {
- tc-export CXX CC
-# conf check for sqlite and mysql
- "${S}"/configure --without-debug \
- --with-bin-release \
- --with-bincopy \
- --without-static \
- --with-dll \
- --with-mt \
- --prefix="${ED}"/usr \
- --libdir="${ED}"/usr/$(get_libdir)/${PN} \
- || die
-}
-
-src_compile() {
- emake all_r -C GCC*-Release*/build || die
-}
-
-src_install() {
- emake install || die
- # File collisions with sci-biology/ncbi-tools
- rm -f "${ED}"/usr/bin/{asn2asn,rpsblast,test_regexp}
-
- echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}" > ${S}/99${PN}
- doenvd "${S}/99${PN}"
-}
-
-pkg_postinst() {
- einfo 'Please run "source /etc/profile" before using this package in the current shell.'
-}