diff options
author | Justin Lecher <jlec@gentoo.org> | 2013-02-28 15:09:15 +0000 |
---|---|---|
committer | Justin Lecher <jlec@gentoo.org> | 2013-02-28 15:09:15 +0000 |
commit | 225e042b7c1cb07a9dbafcff874140ca36870537 (patch) | |
tree | dc9c80b6f8aa717f05c9b9c9e2959bbbf925ca2c /sci-biology/ncbi-tools++ | |
parent | Turn bufferevents off by default: https://trac.torproject.org/projects/tor/ti... (diff) | |
download | gentoo-2-225e042b7c1cb07a9dbafcff874140ca36870537.tar.gz gentoo-2-225e042b7c1cb07a9dbafcff874140ca36870537.tar.bz2 gentoo-2-225e042b7c1cb07a9dbafcff874140ca36870537.zip |
sci-biology/ncbi-tools++: Drop old
(Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
Diffstat (limited to 'sci-biology/ncbi-tools++')
-rw-r--r-- | sci-biology/ncbi-tools++/ChangeLog | 8 | ||||
-rw-r--r-- | sci-biology/ncbi-tools++/metadata.xml | 10 | ||||
-rw-r--r-- | sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15-r1.ebuild | 76 |
3 files changed, 11 insertions, 83 deletions
diff --git a/sci-biology/ncbi-tools++/ChangeLog b/sci-biology/ncbi-tools++/ChangeLog index 99b5d325ec06..6e53f3da9d62 100644 --- a/sci-biology/ncbi-tools++/ChangeLog +++ b/sci-biology/ncbi-tools++/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/ncbi-tools++ -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v 1.26 2012/11/05 11:22:49 jlec Exp $ +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v 1.27 2013/02/28 15:09:15 jlec Exp $ + + 28 Feb 2013; Justin Lecher <jlec@gentoo.org> + -ncbi-tools++-2010.06.15-r1.ebuild, metadata.xml: + Drop old 05 Nov 2012; Justin Lecher <jlec@gentoo.org> ncbi-tools++-0.2010.06.15-r1.ebuild: diff --git a/sci-biology/ncbi-tools++/metadata.xml b/sci-biology/ncbi-tools++/metadata.xml index 3302123e5718..fc7c76942a10 100644 --- a/sci-biology/ncbi-tools++/metadata.xml +++ b/sci-biology/ncbi-tools++/metadata.xml @@ -1,9 +1,9 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer> - <email>weaver@gentoo.org</email> - <name>Andrey Kislyuk</name> - </maintainer> - <herd>sci-biology</herd> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15-r1.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15-r1.ebuild deleted file mode 100644 index 92a083e4dd8b..000000000000 --- a/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15-r1.ebuild +++ /dev/null @@ -1,76 +0,0 @@ -# Copyright 1999-2012 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15-r1.ebuild,v 1.5 2012/06/03 12:53:18 jlec Exp $ - -EAPI="3" - -inherit eutils flag-o-matic multilib toolchain-funcs - -MY_TAG="Jun_15_2010" -MY_Y="${MY_TAG/*_/}" -MY_P="ncbi_cxx--${MY_TAG}" - -DESCRIPTION="NCBI C++ Toolkit, including NCBI BLAST+" -HOMEPAGE="http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit" -SRC_URI=" - ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/${MY_Y}/${MY_TAG}/${MY_P}.tar.gz - http://dev.gentoo.org/~jlec/distfiles/${P}-asneeded.patch.xz" - -LICENSE="public-domain" -SLOT="0" -IUSE="sqlite mysql" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" - -DEPEND=" - sqlite? ( dev-db/sqlite:3 ) - mysql? ( virtual/mysql )" -RDEPEND="${DEPEND}" - -S="${WORKDIR}/${MY_P}" - -src_prepare() { -# filter-ldflags -Wl,--as-needed -# append-ldflags -Wl,--no-undefined - sed -i -e 's/-print-file-name=libstdc++.a//' \ - -e '/sed/ s/\([gO]\[0-9\]\)\*/\1\\+/' \ - src/build-system/configure || die - epatch \ - "${FILESDIR}"/${P}-gcc46.patch \ - "${FILESDIR}"/${P}-gcc47.patch \ - "${WORKDIR}"/${P}-asneeded.patch \ - "${FILESDIR}"/${P}-libpng15.patch \ - "${FILESDIR}"/${P}-glibc-214.patch - - use prefix && append-ldflags -Wl,-rpath,"${EPREFIX}/usr/$(get_libdir)/${PN}" -} - -src_configure() { - tc-export CXX CC -# conf check for sqlite and mysql - "${S}"/configure --without-debug \ - --with-bin-release \ - --with-bincopy \ - --without-static \ - --with-dll \ - --with-mt \ - --prefix="${ED}"/usr \ - --libdir="${ED}"/usr/$(get_libdir)/${PN} \ - || die -} - -src_compile() { - emake all_r -C GCC*-Release*/build || die -} - -src_install() { - emake install || die - # File collisions with sci-biology/ncbi-tools - rm -f "${ED}"/usr/bin/{asn2asn,rpsblast,test_regexp} - - echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}" > ${S}/99${PN} - doenvd "${S}/99${PN}" -} - -pkg_postinst() { - einfo 'Please run "source /etc/profile" before using this package in the current shell.' -} |