Drop old

(Portage version: 2.2.17/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

4 files changed, 5 insertions, 105 deletions

diff --git a/sci-biology/bwa/ChangeLog b/sci-biology/bwa/ChangeLog
index c5a829a1850d..f3a4ad59eec8 100644
--- a/sci-biology/bwa/ChangeLog
+++ b/sci-biology/bwa/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/bwa
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.14 2015/03/03 15:17:10 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.15 2015/03/03 15:17:58 jlec Exp $
+
+  03 Mar 2015; Justin Lecher <jlec@gentoo.org> -bwa-0.5.0-r1.ebuild,
+  -bwa-0.5.9.ebuild, -bwa-0.6.1.ebuild:
+  Drop old
 
 *bwa-0.7.12 (03 Mar 2015)
 
diff --git a/sci-biology/bwa/bwa-0.5.0-r1.ebuild b/sci-biology/bwa/bwa-0.5.0-r1.ebuild
deleted file mode 100644
index 1cf519c13e64..000000000000
--- a/sci-biology/bwa/bwa-0.5.0-r1.ebuild
+++ /dev/null
@@ -1,34 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.5.0-r1.ebuild,v 1.1 2010/09/07 11:51:10 xarthisius Exp $
-
-EAPI=2
-
-inherit flag-o-matic toolchain-funcs
-
-DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner"
-HOMEPAGE="http://maq.sourceforge.net/"
-SRC_URI="mirror://sourceforge/maq/${P}.tar.bz2"
-
-LICENSE="GPL-3"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-src_prepare() {
-	sed -e "s/\$(CC) \$(CFLAGS)/\$(CC) \$(LDFLAGS) \$(CFLAGS)/" \
-		-i "${S}"/Makefile || die #336348
-	append-flags -pthread
-}
-
-src_compile() {
-	emake -e CC="$(tc-getCC)" || die
-}
-
-src_install() {
-	dobin bwa || die
-	doman bwa.1 || die
-	exeinto /usr/share/${PN}
-	doexe solid2fastq.pl || die
-	dodoc ChangeLog NEWS || die
-}
diff --git a/sci-biology/bwa/bwa-0.5.9.ebuild b/sci-biology/bwa/bwa-0.5.9.ebuild
deleted file mode 100644
index 97e541ed1774..000000000000
--- a/sci-biology/bwa/bwa-0.5.9.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.5.9.ebuild,v 1.1 2011/05/01 09:19:52 jlec Exp $
-
-EAPI=2
-
-inherit flag-o-matic toolchain-funcs
-
-DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner"
-HOMEPAGE="http://bio-bwa.sourceforge.net/"
-SRC_URI="mirror://sourceforge/bio-bwa/${P}.tar.bz2"
-
-LICENSE="GPL-3"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86 ~x64-macos"
-
-src_prepare() {
-	sed -e "s/\$(CC) \$(CFLAGS)/\$(CC) \$(LDFLAGS) \$(CFLAGS)/" \
-		-i "${S}"/Makefile || die #336348
-	append-flags -pthread
-}
-
-src_compile() {
-	emake -e CC="$(tc-getCC)" || die
-}
-
-src_install() {
-	dobin bwa || die
-	doman bwa.1 || die
-	exeinto /usr/share/${PN}
-	doexe solid2fastq.pl || die
-	doexe qualfa2fq.pl || die
-	dodoc ChangeLog NEWS || die
-}
diff --git a/sci-biology/bwa/bwa-0.6.1.ebuild b/sci-biology/bwa/bwa-0.6.1.ebuild
deleted file mode 100644
index 96c0be66c38a..000000000000
--- a/sci-biology/bwa/bwa-0.6.1.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.6.1.ebuild,v 1.1 2011/11/30 08:44:21 weaver Exp $
-
-EAPI=2
-
-inherit flag-o-matic toolchain-funcs
-
-DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner"
-HOMEPAGE="http://bio-bwa.sourceforge.net/"
-SRC_URI="mirror://sourceforge/bio-bwa/${P}.tar.bz2"
-
-LICENSE="GPL-3"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86 ~x64-macos"
-
-src_prepare() {
-	sed -e "s/\$(CC) \$(CFLAGS)/\$(CC) \$(LDFLAGS) \$(CFLAGS)/" \
-		-i "${S}"/Makefile || die #336348
-	append-flags -pthread
-}
-
-src_compile() {
-	emake -e CC="$(tc-getCC)" || die
-}
-
-src_install() {
-	dobin bwa || die
-	doman bwa.1 || die
-	exeinto /usr/share/${PN}
-	doexe solid2fastq.pl || die
-	doexe qualfa2fq.pl || die
-	dodoc ChangeLog NEWS || die
-}