New version 2.3.2. Removed old version.

6 files changed, 52 insertions, 51 deletions

diff --git a/app-sci/hmmer/ChangeLog b/app-sci/hmmer/ChangeLog
index 4d69810b456c..4fa2bd965d50 100644
--- a/app-sci/hmmer/ChangeLog
+++ b/app-sci/hmmer/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for app-sci/hmmer
 # Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/hmmer/ChangeLog,v 1.4 2004/06/24 22:03:42 agriffis Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/hmmer/ChangeLog,v 1.5 2004/09/30 00:21:21 ribosome Exp $
+
+*hmmer-2.3.2 (29 Sep 2004)
+
+  29 Sep 2004; Olivier Fisette <ribosome@gentoo.org> -hmmer-2.2g.ebuild,
+  +hmmer-2.3.2.ebuild:
+  New version 2.3.2. Removed old version.
 
   18 Nov 2003; Stephen Diener <sediener@gentoo.org> hmmer-2.3.1.ebuild:
   ~x86 -> x86
diff --git a/app-sci/hmmer/Manifest b/app-sci/hmmer/Manifest
index 9d825b4fd40d..79198f20a867 100644
--- a/app-sci/hmmer/Manifest
+++ b/app-sci/hmmer/Manifest
@@ -1,7 +1,7 @@
-MD5 25a77e8877446483075c9715b350675e hmmer-2.2g.ebuild 893
+MD5 eb6b46ba273c4d8512835fe46d9afb52 hmmer-2.3.2.ebuild 899
 MD5 cdac1c0faccd2982768f2bb62a93a4d6 hmmer-2.3.1.ebuild 913
-MD5 d33b6fadf469ba5b1ddf0e8889fb1992 ChangeLog 569
+MD5 0910c0c59967e4e877d3af80e2afa578 ChangeLog 736
 MD5 e8b4df3df76800c376905734d8043cfa metadata.xml 216
 MD5 9fbc129db1a886510ff026fd89e131f1 files/Makefile-hmmer-2.2g.patch 1040
-MD5 bd33e448c26a59469256420a3b920600 files/digest-hmmer-2.2g 62
 MD5 841308887ec35169e15824b34ffb4c64 files/digest-hmmer-2.3.1 64
+MD5 355efcc8eaed16353cd1ed41c2d63b4e files/digest-hmmer-2.3.2 64
diff --git a/app-sci/hmmer/files/digest-hmmer-2.2g b/app-sci/hmmer/files/digest-hmmer-2.2g
deleted file mode 100644
index 78a5f3430c3f..000000000000
--- a/app-sci/hmmer/files/digest-hmmer-2.2g
+++ /dev/null
@@ -1 +0,0 @@
-MD5 d7def2007a0aaf2eafb9a96a07986b8c hmmer-2.2g.tar.gz 931569
diff --git a/app-sci/hmmer/files/digest-hmmer-2.3.2 b/app-sci/hmmer/files/digest-hmmer-2.3.2
new file mode 100644
index 000000000000..a923f14534a4
--- /dev/null
+++ b/app-sci/hmmer/files/digest-hmmer-2.3.2
@@ -0,0 +1 @@
+MD5 5f073340c0cf761288f961a73821228a hmmer-2.3.2.tar.gz 1024933
diff --git a/app-sci/hmmer/hmmer-2.2g.ebuild b/app-sci/hmmer/hmmer-2.2g.ebuild
deleted file mode 100644
index e789fb87b30e..000000000000
--- a/app-sci/hmmer/hmmer-2.2g.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2004 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/hmmer/hmmer-2.2g.ebuild,v 1.6 2004/07/14 01:51:03 agriffis Exp $
-
-inherit eutils
-
-
-DESCRIPTION="HMMER - Biological sequence analysis with profile HMMs"
-HOMEPAGE="http://hmmer.wustl.edu/"
-SRC_URI="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/CURRENT/${P}.tar.gz"
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="x86"
-IUSE=""
-DEPEND=""
-
-
-src_unpack(){
-	unpack ${A}
-	cd ${S}
-	epatch ${FILESDIR}/Makefile-${P}.patch
-}
-
-src_compile() {
-
-	./configure \
-		--host=${CHOST} \
-		--prefix=${D}/usr \
-		--mandir=${D}/usr/share/man || die "./configure failed"
-
-	emake || die
-}
-
-src_install() {
-
-	dodir usr/bin
-	dodir usr/share/man/man1
-
-	einstall || die
-
-	dodoc 00README COPYRIGHT INSTALL LICENSE NOTES Userguide.pdf
-
-	# include the squid docs
-	dodoc squid/Docs/*.tex
-
-}
diff --git a/app-sci/hmmer/hmmer-2.3.2.ebuild b/app-sci/hmmer/hmmer-2.3.2.ebuild
new file mode 100644
index 000000000000..0c4b3e25470c
--- /dev/null
+++ b/app-sci/hmmer/hmmer-2.3.2.ebuild
@@ -0,0 +1,41 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/app-sci/hmmer/hmmer-2.3.2.ebuild,v 1.1 2004/09/30 00:21:21 ribosome Exp $
+
+DESCRIPTION="HMMER - Biological sequence analysis with profile HMMs"
+HOMEPAGE="http://hmmer.wustl.edu/"
+SRC_URI="ftp://ftp.genetics.wustl.edu/pub/eddy/${PN}/${PV}/${P}.tar.gz"
+LICENSE="GPL-2"
+
+SLOT="0"
+KEYWORDS="~x86"
+IUSE=""
+
+src_compile() {
+	./configure \
+		--host=${CHOST} \
+		--prefix=${D}/usr \
+		--exec_prefix=${D}/usr \
+		--mandir=${D}/usr/share/man || die
+
+#	econf || die
+	emake || die
+}
+
+src_install() {
+	einstall || die
+
+	dodoc 00README NOTES
+
+	insinto /usr/share/doc/${PF}
+	doins Userguide.pdf
+
+	cd squid
+
+	dobin afetch alistat compalign compstruct revcomp seqstat seqsplit sfetch shuffle sreformat sindex weight translate
+	dolib libsquid.a
+}
+
+src_test() {
+	make check
+}